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authorzsloan2020-04-16 14:39:39 -0500
committerzsloan2020-04-16 14:39:39 -0500
commitcf8b4c21d81efaa01d347478dc126e6d9b53f7a9 (patch)
tree871c8502774cb7a8fce950f46285f62ba3d0b113 /wqflask
parentd07e5655e64231deb2d995adc73d6dd3a79e9bfd (diff)
downloadgenenetwork2-cf8b4c21d81efaa01d347478dc126e6d9b53f7a9.tar.gz
Fixed issue that caused submitted traits to not open properly when submitted to a group with case attributes + fixed a link to GN1
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/show_trait/show_trait.py4
-rw-r--r--wqflask/wqflask/templates/submit_trait.html6
2 files changed, 6 insertions, 4 deletions
diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py
index 64deb942..d35ba749 100644
--- a/wqflask/wqflask/show_trait/show_trait.py
+++ b/wqflask/wqflask/show_trait/show_trait.py
@@ -159,7 +159,9 @@ class ShowTrait(object):
self.sample_group_types['samples_primary'] = self.dataset.group.name
sample_lists = [group.sample_list for group in self.sample_groups]
- categorical_var_list = get_categorical_variables(self.this_trait, self.sample_groups[0]) #ZS: Only using first samplelist, since I think mapping only uses those samples
+ categorical_var_list = []
+ if not self.temp_trait:
+ categorical_var_list = get_categorical_variables(self.this_trait, self.sample_groups[0]) #ZS: Only using first samplelist, since I think mapping only uses those samples
#ZS: Get list of chromosomes to select for mapping
self.chr_list = [["All", -1]]
diff --git a/wqflask/wqflask/templates/submit_trait.html b/wqflask/wqflask/templates/submit_trait.html
index 0dd38fe5..68b06f55 100644
--- a/wqflask/wqflask/templates/submit_trait.html
+++ b/wqflask/wqflask/templates/submit_trait.html
@@ -32,7 +32,7 @@
<div class="form-group">
<h2 style="color: #5a5a5a;">Trait Submission Form</h2>
<hr>
- <div style="padding-bottom: 50px;" class="form-horizontal">
+ <div style="margin-bottom: 150px;" class="form-horizontal">
<h3>1. Choose Species and Group:</h3>
<br>
<div class="col-xs-2" style="min-height: 15vh; display: flex; align-items: center;">
@@ -57,7 +57,7 @@
<h3>2. Enter Trait Data:</h3>
<h4 style="color:red;">File uploading isn't enabled yet, but is coming soon.</h4>
<br>
- <div class="col-xs-2" style="min-height: 100vh; display: flex; align-items: center;">
+ <div class="col-xs-2" style="min-height: 50vh; max-height: 100vh; display: flex; align-items: center;">
<img src="/static/new/images/step2.gif">
</div>
<div class="col-xs-10">
@@ -79,7 +79,7 @@
The values can be on one line separated by spaces or tabs, or they can be on separate lines. Include one value for each individual
or line. Use an "x" for missing values. If you have chosen a set of inbred strains, then your data will be displayed in a form in
which you can confirm and/or edit. If you enter a file name in the previous section,
- any data that you paste here will be ignored. Check <a href="http://genenetwork.org/RIsample.html">sample data</a> for the correct format.
+ any data that you paste here will be ignored. Check <a href="http://gn1.genenetwork.org/RIsample.html">sample data</a> for the correct format.
</p>
<textarea name="trait_paste" rows="6" cols="70"></textarea>
</div>