diff options
| author | Zachary Sloan | 2012-10-25 15:48:14 -0500 |
|---|---|---|
| committer | Zachary Sloan | 2012-10-25 15:48:14 -0500 |
| commit | a3e23950f25863697128eb3e40fd346c848e7ae5 (patch) | |
| tree | 0bf3bab4c3042b49c9a9001906d1db41c64a2e94 /wqflask | |
| parent | fa3247c3284034357719f9234a2942f9cda8c2b6 (diff) | |
| download | genenetwork2-a3e23950f25863697128eb3e40fd346c848e7ae5.tar.gz | |
Got the Make Default option working on the home page
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/cfg/default_settings.py | 4 | ||||
| -rw-r--r-- | wqflask/cfg/zach_settings.py | 1 | ||||
| -rw-r--r-- | wqflask/maintenance/gen_select_dataset.py | 33 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/dataset_menu_structure | 2904 | ||||
| -rwxr-xr-x | wqflask/wqflask/static/new/javascript/dataset_select_items.js | 773 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee | 10 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/dataset_select_menu.js | 12 |
7 files changed, 46 insertions, 3691 deletions
diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py index 30ad51d1..1811ccfd 100644 --- a/wqflask/cfg/default_settings.py +++ b/wqflask/cfg/default_settings.py @@ -1 +1,5 @@ LOGFILE = """/tmp/flask_gn_log""" + +#This is needed because Flask turns key errors into a +#400 bad request response with no exception/log +TRAP_BAD_REQUEST_ERRORS = True diff --git a/wqflask/cfg/zach_settings.py b/wqflask/cfg/zach_settings.py index 30ad51d1..ed97f222 100644 --- a/wqflask/cfg/zach_settings.py +++ b/wqflask/cfg/zach_settings.py @@ -1 +1,2 @@ LOGFILE = """/tmp/flask_gn_log""" +TRAP_BAD_REQUEST_ERRORS = True diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py index 9224b884..4c544192 100644 --- a/wqflask/maintenance/gen_select_dataset.py +++ b/wqflask/maintenance/gen_select_dataset.py @@ -1,3 +1,10 @@ +"""Script that generates the data for the main dropdown menus on the home page + +Writes out data as /static/new/javascript/dataset_menu_structure.json +It needs to be run manually when database has been changed. + +""" + # Copyright (C) University of Tennessee Health Science Center, Memphis, TN. # # This program is free software: you can redistribute it and/or modify it @@ -13,16 +20,13 @@ # This program is available from Source Forge: at GeneNetwork Project # (sourceforge.net/projects/genenetwork/). # -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu +# Contact Drs. Robert W. Williams +# at rwilliams@uthsc.edu # # # # This module is used by GeneNetwork project (www.genenetwork.org) -# This script is to generate the data for the main menus on the home page -# It needs to be run manually when database has been changed . - from __future__ import print_function, division import sys @@ -39,7 +43,8 @@ from base import webqtlConfig # build MySql database connection -Con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER, +Con = MySQLdb.Connect(db=webqtlConfig.DB_NAME, + host=webqtlConfig.MYSQL_SERVER, user=webqtlConfig.DB_USER, passwd=webqtlConfig.DB_PASSWD) Cursor = Con.cursor() @@ -82,6 +87,12 @@ def get_types(groups): def build_types(species, group): + """Fetches tissues + + Gets the tissues with data for this species/group + (all types except phenotype/genotype are tissues) + + """ Cursor.execute("""select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue, Species where Species.Name = %s and Species.Id = InbredSet.SpeciesId and @@ -101,12 +112,13 @@ def get_datasets(types): datasets[species] = {} for group, type_list in group_dict.iteritems(): datasets[species][group] = {} - for type_name, type_full_name in type_list: + for type_name, _type_full_name in type_list: datasets[species][group][type_name] = build_datasets(species, group, type_name) return datasets def build_datasets(species, group, type_name): + """Gets dataset names from database""" dataset_text = dataset_value = None if type_name == "Phenotypes": dataset_value = "%sPublish" % group @@ -135,6 +147,7 @@ def build_datasets(species, group, type_name): def main(): + """Generates and outputs (as json file) the data for the main dropdown menus on the home page""" species = get_species() groups = get_groups(species) types = get_types(groups) @@ -154,14 +167,16 @@ def main(): datasets=datasets, ) - output_file = """../wqflask/static/new/javascript/dataset_menu_structure""" + output_file = """../wqflask/static/new/javascript/dataset_menu_structure.json""" with open(output_file, 'w') as fh: json.dump(data, fh, indent=" ", sort_keys=True) print("\nWrote file to:", output_file) -def test_it(): + +def _test_it(): + """Used for internal testing only""" types = build_types("Mouse", "BXD") print("build_types:", pf(types)) datasets = build_datasets("Mouse", "BXD", "Hippocampus") diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure b/wqflask/wqflask/static/new/javascript/dataset_menu_structure deleted file mode 100644 index 1b7e4090..00000000 --- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure +++ /dev/null @@ -1,2904 +0,0 @@ -{ - "datasets": { - "All Species": { - "All Groups": { - "Phenotypes": [ - [ - "All Phenotypes", - "All Phenotypes" - ] - ] - } - }, - "arabidopsis": { - "BayXSha": { - "Genotypes": [ - [ - "BayXShaGeno", - "BayXSha Genotypes" - ] - ], - "Phenotypes": [ - [ - "BayXShaPublish", - "BayXSha Published Phenotypes" - ] - ] - }, - "ColXBur": { - "Genotypes": [ - [ - "ColXBurGeno", - "ColXBur Genotypes" - ] - ], - "Phenotypes": [ - [ - "ColXBurPublish", - "ColXBur Published Phenotypes" - ] - ] - }, - "ColXCvi": { - "Genotypes": [ - [ - "ColXCviGeno", - "ColXCvi Genotypes" - ] - ], - "Phenotypes": [ - [ - "ColXCviPublish", - "ColXCvi Published Phenotypes" - ] - ] - } - }, - "barley": { - "QSM": { - "Genotypes": [ - [ - "QSMGeno", - "QSM Genotypes" - ] - ], - "Leaf": [ - [ - "B1LI0809R", - "Barley1 Leaf INOC TTKS (Aug09) RMA" - ], - [ - "B1LI0809M5", - "Barley1 Leaf INOC TTKS (Aug09) MAS5" - ], - [ - "B1MI0809M5", - "Barley1 Leaf MOCK TTKS (Aug09) MAS5" - ], - [ - "B1MI0809R", - "Barley1 Leaf MOCK TTKS (Aug09) RMA" - ] - ], - "Phenotypes": [ - [ - "QSMPublish", - "QSM Published Phenotypes" - ] - ] - }, - "SXM": { - "Embryo": [ - [ - "B139_K_1206_R", - "Barley1 Embryo gcRMA SCRI (Dec06)" - ], - [ - "B139_K_1206_M", - "Barley1 Embryo MAS 5.0 SCRI (Dec06)" - ], - [ - "B150_K_0406_R", - "Barley1 Embryo0 gcRMA SCRI (Apr06)" - ] - ], - "Genotypes": [ - [ - "SXMGeno", - "SXM Genotypes" - ] - ], - "Leaf": [ - [ - "B30_K_1206_M", - "Barley1 Leaf MAS 5.0 SCRI (Dec06)" - ], - [ - "B30_K_1206_Rn", - "Barley1 Leaf gcRMAn SCRI (Dec06)" - ], - [ - "B30_K_1206_R", - "Barley1 Leaf gcRMA SCRI (Dec06)" - ] - ], - "Phenotypes": [ - [ - "SXMPublish", - "SXM Published Phenotypes" - ] - ] - } - }, - "drosophila": { - "DGRP": { - "Genotypes": [ - [ - "DGRPGeno", - "DGRP Genotypes" - ] - ], - "Phenotypes": [ - [ - "DGRPPublish", - "DGRP Published Phenotypes" - ] - ], - "Whole Body": [ - [ - "NCSU_DrosWB_LC_RMA_0111", - "NCSU Drosophila Whole Body (Jan11) RMA" - ] - ] - }, - "Oregon-R_x_2b3": { - "Genotypes": [ - [ - "Oregon-R_x_2b3Geno", - "Oregon-R_x_2b3 Genotypes" - ] - ], - "Phenotypes": [ - [ - "Oregon-R_x_2b3Publish", - "Oregon-R_x_2b3 Published Phenotypes" - ] - ], - "Whole Body": [ - [ - "UAB_DrosWB_LC_RMA_1009", - "UAB Whole body D.m. mRNA control (Oct09) RMA" - ], - [ - "UAB_DrosWB_LE_RMA_1009", - "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA" - ] - ] - } - }, - "human": { - "AD-cases-controls": { - "Brain": [ - [ - "GSE5281_F_RMA_N_0709", - "GSE5281 Human Brain Normal Full Liang (Jul09) RMA" - ], - [ - "GSE5281_F_RMA_Alzh_0709", - "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA" - ], - [ - "GSE5281_F_RMA0709", - "GSE5281 Human Brain Full Liang (Jul09) RMA" - ], - [ - "GSE5281_RMA0709", - "GSE5281 Human Brain Best 102 Liang (Jul09) RMA" - ] - ], - "Genotypes": [ - [ - "AD-cases-controlsGeno", - "AD-cases-controls Genotypes" - ] - ], - "Phenotypes": [ - [ - "AD-cases-controlsPublish", - "AD-cases-controls Published Phenotypes" - ] - ] - }, - "AD-cases-controls-Myers": { - "Brain": [ - [ - "GSE15222_F_A_RI_0409", - "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv" - ], - [ - "GSE15222_F_N_RI_0409", - "GSE15222 Human Brain Normal Myers (Apr09) RankInv" - ], - [ - "GSE15222_F_RI_0409", - "GSE15222 Human Brain Myers (Apr09) RankInv" - ] - ], - "Genotypes": [ - [ - "AD-cases-controls-MyersGeno", - "AD-cases-controls-Myers Genotypes" - ] - ], - "Phenotypes": [ - [ - "AD-cases-controls-MyersPublish", - "AD-cases-controls-Myers Published Phenotypes" - ] - ] - }, - "CANDLE": { - "Genotypes": [ - [ - "CANDLEGeno", - "CANDLE Genotypes" - ] - ], - "Newborn Cord Blood": [ - [ - "CANDLE_NB_0711", - "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT **" - ] - ], - "Phenotypes": [ - [ - "CANDLEPublish", - "CANDLE Published Phenotypes" - ] - ] - }, - "CEPH-2004": { - "Genotypes": [ - [ - "CEPH-2004Geno", - "CEPH-2004 Genotypes" - ] - ], - "Lymphoblast B-cell": [ - [ - "UT_CEPH_RankInv0909", - "UTHSC CEPH B-cells Illumina (Sep09) RankInv" - ], - [ - "Human_1008", - "Monks CEPH B-cells Agilent (Dec04) Log10Ratio" - ] - ], - "Phenotypes": [ - [ - "CEPH-2004Publish", - "CEPH-2004 Published Phenotypes" - ] - ] - }, - "HB": { - "Cerebellum": [ - [ - "HBTRC-MLC_0611", - "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio" - ], - [ - "HBTRC-MLC_N_0611", - "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio" - ], - [ - "HBTRC-MLC_AD_0611", - "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio" - ], - [ - "HBTRC-MLC_HD_0611", - "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio" - ] - ], - "Genotypes": [ - [ - "HBGeno", - "HB Genotypes" - ] - ], - "Phenotypes": [ - [ - "HBPublish", - "HB Published Phenotypes" - ] - ], - "Prefrontal Cortex": [ - [ - "HBTRC-MLPFC_0611", - "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio" - ], - [ - "HBTRC-MLPFC_N_0611", - "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio" - ], - [ - "HBTRC-MLPFC_AD_0611", - "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio" - ], - [ - "HBTRC-MLPFC_HD_0611", - "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio" - ] - ], - "Primary Visual Cortex": [ - [ - "HBTRC-MLVC_0611", - "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio" - ], - [ - "HBTRC-MLVC_N_0611", - "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio" - ], - [ - "HBTRC-MLVC_AD_0611", - "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio" - ], - [ - "HBTRC-MLVC_HD_0611", - "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio" - ] - ] - }, - "HLC": { - "Genotypes": [ - [ - "HLCGeno", - "HLC Genotypes" - ] - ], - "Liver": [ - [ - "HLC_0311", - "GSE9588 Human Liver Normal (Mar11) Both Sexes" - ], - [ - "HLCM_0311", - "GSE9588 Human Liver Normal (Mar11) Males" - ], - [ - "HLCF_0311", - "GSE9588 Human Liver Normal (Mar11) Females" - ] - ], - "Phenotypes": [ - [ - "HLCPublish", - "HLC Published Phenotypes" - ] - ] - }, - "HSB": { - "Amygdala": [ - [ - "KIN_YSM_AMY_0711", - "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Caudal Ganglionic Eminence": [ - [ - "KIN_YSM_CGE_0711", - "KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Cerebellar Cortex": [ - [ - "KIN_YSM_CBC_0711", - "KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Diencephalon": [ - [ - "KIN_YSM_DIE_0711", - "KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Dorsal Thalamus": [ - [ - "KIN_YSM_DTH_0711", - "KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Dorsolateral Prefrontal Cortex": [ - [ - "KIN_YSM_DFC_0711", - "KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Frontal Cerebral Wall": [ - [ - "KIN_YSM_FC_0711", - "KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Genotypes": [ - [ - "HSBGeno", - "HSB Genotypes" - ] - ], - "Hippocampus": [ - [ - "KIN_YSM_HIP_0711", - "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Inferior Temporal Cortex": [ - [ - "KIN_YSM_ITC_0711", - "KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Lateral Ganglionic Eminence": [ - [ - "KIN_YSM_LGE_0711", - "KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Medial Ganglionic Eminence": [ - [ - "KIN_YSM_MGE_0711", - "KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Medial Prefrontal Cortex": [ - [ - "KIN_YSM_MFC_0711", - "KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Mediodorsal Nucleus of Thalamus": [ - [ - "KIN_YSM_MD_0711", - "KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Occipital Cerebral Wall": [ - [ - "KIN_YSM_OC_0711", - "KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Orbital Prefrontal Cortex": [ - [ - "KIN_YSM_OFC_0711", - "KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Parietal Cerebral Wall": [ - [ - "KIN_YSM_PC_0711", - "KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Phenotypes": [ - [ - "HSBPublish", - "HSB Published Phenotypes" - ] - ], - "Posterior Inferior Parietal Cortex": [ - [ - "KIN_YSM_IPC_0711", - "KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Posterior Superior Temporal Cortex": [ - [ - "KIN_YSM_STC_0711", - "KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Primary Auditory (A1) Cortex": [ - [ - "KIN_YSM_A1C_0711", - "KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Primary Motor (M1) Cortex": [ - [ - "KIN_YSM_M1C_0711", - "KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Primary Somatosensory (S1) Cortex": [ - [ - "KIN_YSM_S1C_0711", - "KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Primary Visual Cortex": [ - [ - "KIN_YSM_V1C_0711", - "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Striatum": [ - [ - "KIN_YSM_STR_0711", - "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Temporal Cerebral Wall": [ - [ - "KIN_YSM_TC_0711", - "KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Upper (Rostral) Rhombic Lip": [ - [ - "KIN_YSM_URL_0711", - "KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Ventral Forebrain": [ - [ - "KIN_YSM_VF_0711", - "KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ], - "Ventrolateral Prefrontal Cortex": [ - [ - "KIN_YSM_VFC_0711", - "KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **" - ] - ] - } - }, - "macaque monkey": { - "Macaca-fasicularis": { - "Amygdala": [ - [ - "INIA_MacFas_AMGc_RMA_0110", - "INIA Macaca fasicularis Amygdala control (Jan10) RMA **" - ], - [ - "INIA_MacFas_AMGe_RMA_0110", - "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **" - ] - ], - "Brain": [ - [ - "INIA_MacFas_brain_RMA_0110", - "INIA Macaca fasicularis Brain (Jan10) RMA **" - ] - ], - "Genotypes": [ - [ - "Macaca-fasicularisGeno", - "Macaca-fasicularis Genotypes" - ] - ], - "Hippocampus": [ - [ - "INIA_MacFas_Hc_RMA_0110", - "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **" - ], - [ - "INIA_MacFas_He_RMA_0110", - "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **" - ] - ], - "Nucleus Accumbens": [ - [ - "INIA_MacFas_Ac_RMA_0110", - "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **" - ], - [ - "INIA_MacFas_Ae_RMA_0110", - "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **" - ] - ], - "Phenotypes": [ - [ - "Macaca-fasicularisPublish", - "Macaca-fasicularis Published Phenotypes" - ] - ], - "Prefrontal Cortex": [ - [ - "INIA_MacFas_Pf_RMA_0110", - "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **" - ], - [ - "INIA_MacFas_PfE_RMA_0110", - "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **" - ] - ] - } - }, - "mouse": { - "AKXD": { - "Genotypes": [ - [ - "AKXDGeno", - "AKXD Genotypes" - ] - ], - "Mammary Tumors": [ - [ - "NCI_Agil_Mam_Tum_RMA_0409", - "NCI Mammary LMT miRNA v2 (Apr09) RMA" - ], - [ - "MA_M_0704_R", - "NCI Mammary mRNA M430 (July04) RMA" - ], - [ - "MA_M_0704_M", - "NCI Mammary mRNA M430 (July04) MAS5" - ] - ], - "Phenotypes": [ - [ - "AKXDPublish", - "AKXD Published Phenotypes" - ] - ] - }, - "AXBXA": { - "Eye": [ - [ - "Eye_AXBXA_1008_RankInv", - "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta" - ] - ], - "Genotypes": [ - [ - "AXBXAGeno", - "AXBXA Genotypes" - ] - ], - "Phenotypes": [ - [ - "AXBXAPublish", - "AXBXA Published Phenotypes" - ] - ] - }, - "B6BTBRF2": { - "Genotypes": [ - [ - "B6BTBRF2Geno", - "B6BTBRF2 Genotypes" - ] - ], - "Liver": [ - [ - "LVF2_M_0704_R", - "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA" - ], - [ - "LVF2_M_0704_M", - "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5" - ] - ], - "Phenotypes": [ - [ - "B6BTBRF2Publish", - "B6BTBRF2 Published Phenotypes" - ] - ] - }, - "B6D2F2": { - "Brain": [ - [ - "BRF2_M_0805_R", - "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA" - ], - [ - "BRF2_M_0805_M", - "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5" - ], - [ - "BRF2_M_0805_P", - "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN" - ], - [ - "BRF2_M_0304_P", - "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN" - ], - [ - "BRF2_M_0304_R", - "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA" - ], - [ - "BRF2_M_0304_M", - "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5" - ] - ], - "Genotypes": [ - [ - "B6D2F2Geno", - "B6D2F2 Genotypes" - ] - ], - "Phenotypes": [ - [ - "B6D2F2Publish", - "B6D2F2 Published Phenotypes" - ] - ] - }, - "BDF2-1999": { - "Genotypes": [ - [ - "BDF2-1999Geno", - "BDF2-1999 Genotypes" - ] - ], - "Liver": [ - [ - "UCLA_BDF2_LIVER_1999", - "UCLA BDF2 Liver (1999) mlratio" - ] - ], - "Phenotypes": [ - [ - "BDF2-1999Publish", - "BDF2-1999 Published Phenotypes" - ] - ] - }, - "BDF2-2005": { - "Genotypes": [ - [ - "BDF2-2005Geno", - "BDF2-2005 Genotypes" - ] - ], - "Phenotypes": [ - [ - "BDF2-2005Publish", - "BDF2-2005 Published Phenotypes" - ] - ], - "Striatum": [ - [ - "SA_M2_0905_R", - "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA" - ], - [ - "SA_M2_0905_M", - "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5" - ], - [ - "SA_M2_0905_P", - "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN" - ] - ] - }, - "BHF2": { - "Adipose": [ - [ - "UCLA_BHF2_ADIPOSE_MALE", - "UCLA BHF2 Adipose Male mlratio" - ], - [ - "UCLA_BHF2_ADIPOSE_FEMALE", - "UCLA BHF2 Adipose Female mlratio" - ], - [ - "UCLA_BHF2_ADIPOSE_0605", - "UCLA BHF2 Adipose (June05) mlratio" - ] - ], - "Brain": [ - [ - "UCLA_BHF2_BRAIN_MALE", - "UCLA BHF2 Brain Male mlratio" - ], - [ - "UCLA_BHF2_BRAIN_FEMALE", - "UCLA BHF2 Brain Female mlratio" - ], - [ - "UCLA_BHF2_BRAIN_0605", - "UCLA BHF2 Brain (June05) mlratio" - ] - ], - "Genotypes": [ - [ - "BHF2Geno", - "BHF2 Genotypes" - ] - ], - "Liver": [ - [ - "UCLA_BHF2_LIVER_MALE", - "UCLA BHF2 Liver Male mlratio" - ], - [ - "UCLA_BHF2_LIVER_FEMALE", - "UCLA BHF2 Liver Female mlratio" - ], - [ - "UCLA_BHF2_LIVER_0605", - "UCLA BHF2 Liver (June05) mlratio" - ] - ], - "Muscle": [ - [ - "UCLA_BHF2_MUSCLE_MALE", - "UCLA BHF2 Muscle Male mlratio **" - ], - [ - "UCLA_BHF2_MUSCLE_FEMALE", - "UCLA BHF2 Muscle Female mlratio **" - ], - [ - "UCLA_BHF2_MUSCLE_0605", - "UCLA BHF2 Muscle (June05) mlratio **" - ] - ], - "Phenotypes": [ - [ - "BHF2Publish", - "BHF2 Published Phenotypes" - ] - ] - }, - "BHHBF2": { - "Adipose": [ - [ - "UCLA_BHHBF2_ADIPOSE_MALE", - "UCLA BHHBF2 Adipose Male Only" - ], - [ - "UCLA_BHHBF2_ADIPOSE_FEMALE", - "UCLA BHHBF2 Adipose Female Only" - ], - [ - "UCLA_BHHBF2_ADIPOSE_2005", - "UCLA BHHBF2 Adipose (2005) mlratio **" - ] - ], - "Brain": [ - [ - "UCLA_BHHBF2_BRAIN_MALE", - "UCLA BHHBF2 Brain Male Only" - ], - [ - "UCLA_BHHBF2_BRAIN_FEMALE", - "UCLA BHHBF2 Brain Female Only" - ], - [ - "UCLA_BHHBF2_BRAIN_2005", - "UCLA BHHBF2 Brain (2005) mlratio **" - ] - ], - "Genotypes": [ - [ - "BHHBF2Geno", - "BHHBF2 Genotypes" - ] - ], - "Liver": [ - [ - "UCLA_BHHBF2_LIVER_MALE", - "UCLA BHHBF2 Liver Male Only" - ], - [ - "UCLA_BHHBF2_LIVER_FEMALE", - "UCLA BHHBF2 Liver Female Only" - ], - [ - "UCLA_BHHBF2_LIVER_2005", - "UCLA BHHBF2 Liver (2005) mlratio **" - ] - ], - "Muscle": [ - [ - "UCLA_BHHBF2_MUSCLE_MALE", - "UCLA BHHBF2 Muscle Male Only" - ], - [ - "UCLA_BHHBF2_MUSCLE_FEMALE", - "UCLA BHHBF2 Muscle Female Only" - ], - [ - "UCLA_BHHBF2_MUSCLE_2005", - "UCLA BHHBF2 Muscle (2005) mlratio **" - ] - ], - "Phenotypes": [ - [ - "BHHBF2Publish", - "BHHBF2 Published Phenotypes" - ] - ] - }, - "BXD": { - "Amygdala": [ - [ - "INIA_AmgCoh_0311", - "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA" - ], - [ - "INIA_Amg_BLA_RMA_1110", - "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA" - ], - [ - "INIA_Amg_BLA_RMA_M_1110", - "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male" - ], - [ - "INIA_Amg_BLA_RMA_F_1110", - "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female" - ] - ], - "Brain": [ - [ - "BR_M2_1106_R", - "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA" - ], - [ - "BR_U_1105_P", - "UTHSC Brain mRNA U74Av2 (Nov05) PDNN" - ], - [ - "BR_U_0805_M", - "UTHSC Brain mRNA U74Av2 (Aug05) MAS5" - ], - [ - "BR_U_0805_R", - "UTHSC Brain mRNA U74Av2 (Aug05) RMA" - ], - [ - "BR_U_0805_P", - "UTHSC Brain mRNA U74Av2 (Aug05) PDNN" - ], - [ - "CB_M_0204_P", - "INIA Brain mRNA M430 (Feb04) PDNN" - ] - ], - "Cartilage": [ - [ - "UCLA_BXDBXH_CARTILAGE_V2", - "UCLA BXD and BXH Cartilage v2" - ], - [ - "UCLA_BXDBXH_CARTILAGE", - "UCLA BXD and BXH Cartilage" - ], - [ - "UCLA_BXD_CARTILAGE", - "UCLA BXD Cartilage" - ] - ], - "Cerebellum": [ - [ - "CB_M_1004_M", - "SJUT Cerebellum mRNA M430 (Oct04) MAS5" - ], - [ - "CB_M_1004_R", - "SJUT Cerebellum mRNA M430 (Oct04) RMA" - ], - [ - "CB_M_1004_P", - "SJUT Cerebellum mRNA M430 (Oct04) PDNN" - ], - [ - "CB_M_1003_M", - "SJUT Cerebellum mRNA M430 (Oct03) MAS5" - ] - ], - "Eye": [ - [ - "Eye_M2_0908_R", - "Eye M430v2 (Sep08) RMA" - ], - [ - "Eye_M2_0908_R_NB", - "Eye M430v2 Mutant Gpnmb (Sep08) RMA **" - ], - [ - "Eye_M2_0908_R_ND", - "Eye M430v2 WT Gpnmb (Sep08) RMA **" - ], - [ - "Eye_M2_0908_R_WT", - "Eye M430v2 WT Tyrp1 (Sep08) RMA **" - ], - [ - "Eye_M2_0908_WTWT", - "Eye M430v2 WT WT (Sep08) RMA **" - ], - [ - "Eye_M2_0908_R_MT", - "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **" - ], - [ - "BXD_GLA_0911", - "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **" - ] - ], - "Genotypes": [ - [ - "BXDGeno", - "BXD Genotypes" - ] - ], - "Hematopoietic Cells": [ - [ - "UMCG_0907_HemaStem_ori", - "UMCG Stem Cells ILM6v1.1 (Apr09) original" - ], - [ - "UMCG_0907_HemaStem", - "UMCG Stem Cells ILM6v1.1 (Apr09) transformed" - ], - [ - "UMCG_0907_Pro_ori", - "UMCG Progenitor Cells ILM6v1.1 (Apr09) original" - ], - [ - "UMCG_0907_Pro", - "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed" - ], - [ - "UMCG_0907_Eryth_ori", - "UMCG Erythroid Cells ILM6v1.1 (Apr09) original" - ], - [ - "UMCG_0907_Eryth", - "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed" - ], - [ - "UMCG_0907_Myeloid_ori", - "UMCG Myeloid Cells ILM6v1.1 (Apr09) original" - ], - [ - "UMCG_0907_Myeloid", - "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed" - ], - [ - "HC_U_0304_R", - "GNF Stem Cells U74Av2 (Mar04) RMA" - ] - ], - "Hippocampus": [ - [ - "HC_M2_0606_P", - "Hippocampus Consortium M430v2 (Jun06) PDNN" - ], - [ - "HC_M2_0606_M", - "Hippocampus Consortium M430v2 (Jun06) MAS5" - ], - [ - "HC_M2_0606_R", - "Hippocampus Consortium M430v2 (Jun06) RMA" - ], - [ - "UMUTAffyExon_0209_RMA", - "UMUTAffy Hippocampus Exon (Feb09) RMA" - ], - [ - "UT_ILM_BXD_hipp_NON_0909", - "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv" - ], - [ - "UT_ILM_BXD_hipp_NOS_0909", - "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv" - ], - [ - "UT_ILM_BXD_hipp_NOE_0909", - "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv" - ], - [ - "UT_ILM_BXD_hipp_RSS_0909", - "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv" - ], - [ - "UT_ILM_BXD_hipp_RSE_0909", - "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv" - ] - ], - "Hypothalamus": [ - [ - "INIA_Hyp_RMA_1110", - "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)" - ], - [ - "INIA_Hyp_M_RMA_1110", - "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male" - ], - [ - "INIA_Hyp_F_RMA_1110", - "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female" - ] - ], - "Kidney": [ - [ - "MA_M2F_0706_R", - "Mouse kidney M430v2 Female (Aug06) RMA" - ], - [ - "MA_M2M_0706_R", - "Mouse kidney M430v2 Male (Aug06) RMA" - ], - [ - "MA_M2_0806_R", - "Mouse kidney M430v2 Sex Balanced (Aug06) RMA" - ], - [ - "MA_M2_0806_P", - "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN" - ], - [ - "MA_M2_0706_P", - "Mouse Kidney M430v2 (Jul06) PDNN" - ], - [ - "MA_M2_0706_R", - "Mouse Kidney M430v2 (Jul06) RMA" - ] - ], - "Leucocytes": [ - [ - "Illum_BXD_PBL_1108", - "UWA Illumina PBL (Nov08) RSN **" - ] - ], - "Liver": [ - [ - "GSE16780_UCLA_ML0911", - "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA" - ], - [ - "GenEx_BXD_liverSal_RMA_F_0211", - "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **" - ], - [ - "GenEx_BXD_liverSal_RMA_M_0211", - "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **" - ], - [ - "GenEx_BXD_liverSal_RMA_0211", - "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **" - ], - [ - "GenEx_BXD_liverEt_RMA_F_0211", - "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **" - ], - [ - "GenEx_BXD_liverEt_RMA_M_0211", - "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **" - ], - [ - "GenEx_BXD_liverEt_RMA_0211", - "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **" - ], - [ - "SUH_Liv_RMA_0611", - "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **" - ] - ], - "Lung": [ - [ - "HZI_0408_R", - "HZI Lung M430v2 (Apr08) RMA" - ], - [ - "HZI_0408_M", - "HZI Lung M430v2 (Apr08) MAS5" - ] - ], - "Midbrain": [ - [ - "VUBXDMouseMidBrainQ0212", - "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (Feb12) Quantile" - ] - ], - "Muscle": [ - [ - "EPFLMouseMuscleRMA1211", - "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **" - ], - [ - "EPFLMouseMuscleHFDRMA1211", - "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **" - ], - [ - "EPFLMouseMuscleCDRMA1211", - "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **" - ] - ], - "Neocortex": [ - [ - "DevNeocortex_ILM6.2P14RInv_1111", - "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv **" - ], - [ - "DevNeocortex_ILM6.2P3RInv_1111", - "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv **" - ], - [ - "HQFNeoc_1210v2_RankInv", - "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv" - ], - [ - "HQFNeoc_1210_RankInv", - "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv" - ], - [ - "HQFNeoc_0208_RankInv", - "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv" - ], - [ - "DevNeocortex_ILM6.2P3RInv_1110", - "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv **" - ], - [ - "DevNeocortex_ILM6.2P14RInv_1110", - "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv **" - ] - ], - "Nucleus Accumbens": [ - [ - "VCUSalo_1007_R", - "VCU BXD NA Sal M430 2.0 (Oct07) RMA" - ], - [ - "VCUEtOH_1007_R", - "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **" - ], - [ - "VCUSal_1007_R", - "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **" - ] - ], - "Phenotypes": [ - [ - "BXDPublish", - "BXD Published Phenotypes" - ] - ], - "Prefrontal Cortex": [ - [ - "VCUEtOH_1206_R", - "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA" - ], - [ - "VCUSal_1206_R", - "VCU BXD PFC Sal M430 2.0 (Dec06) RMA" - ], - [ - "VCUSal_1006_R", - "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore" - ], - [ - "VCU_PF_Air_0111_R", - "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **" - ], - [ - "VCU_PF_Et_0111_R", - "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **" - ], - [ - "VCU_PF_AvE_0111_Ss", - "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **" - ] - ], - "Retina": [ - [ - "Illum_Retina_BXD_RankInv0410", - "HEI Retina Illumina V6.2 (April 2010) RankInv" - ], - [ - "B6D2ONCILM_0412", - "B6D2 ONC Illumina v6.1 (Apr12) RankInv **" - ], - [ - "ONCRetILM6_0412", - "ONC Retina Illumina V6.2 (Apr12) RankInv **" - ], - [ - "HEIONCvsCRetILM6_0911", - "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **" - ], - [ - "G2HEIONCRetILM6_0911", - "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **" - ], - [ - "HEIONCRetILM6_0911", - "HEI ONC Retina Illumina V6.2 (Sep11) RankInv **" - ], - [ - "ILM_Retina_BXD_F_RankInv1210", - "HEI Retina Females Illumina V6.2 (Dec10) RankInv **" - ], - [ - "ILM_Retina_BXD_M_RankInv1210", - "HEI Retina Males Illumina V6.2 (Dec10) RankInv **" - ], - [ - "ILM_Retina_BXD_FM_RankInv1210", - "HEI Retina F-M Illumina V6.2 (Dec10) RankInv **" - ], - [ - "G2NEI_ILM_Retina_BXD_RI0410", - "G2NEI Retina Illumina V6.2 (April 2010) RankInv **" - ] - ], - "Spleen": [ - [ - "UTHSC_SPL_RMA_1210", - "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA" - ], - [ - "UTHSC_SPL_RMA_1010", - "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA" - ], - [ - "IoP_SPL_RMA_0509", - "IoP Affy MOE 430v2 Spleen (May09) RMA" - ], - [ - "Illum_BXD_Spl_1108", - "UWA Illumina Spleen (Nov08) RSN **" - ], - [ - "UTK_BXDSpl_VST_0110", - "UTK Spleen ILM6.1 (Jan10) VST" - ] - ], - "Striatum": [ - [ - "DevStriatum_ILM6.2P3RInv_1111", - "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **" - ], - [ - "DevStriatum_ILM6.2P14RInv_1111", - "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **" - ], - [ - "UTHSC_Striatum_RankInv_1210", - "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv" - ], - [ - "UTHSC_Str_RankInv_1210", - "HQF BXD Striatum ILM6.1 (Dec10) RankInv" - ], - [ - "UTHSC_1107_RankInv", - "HQF BXD Striatum ILM6.1 (Nov07) RankInv" - ], - [ - "SA_M2_0405_MC", - "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean" - ], - [ - "SA_M2_0405_RC", - "HBP Rosen Striatum M430V2 (Apr05) RMA Clean" - ], - [ - "SA_M2_0405_PC", - "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean" - ], - [ - "SA_M2_0405_SS", - "HBP Rosen Striatum M430V2 (Apr05) SScore" - ], - [ - "SA_M2_0405_RR", - "HBP Rosen Striatum M430V2 (Apr05) RMA Orig" - ], - [ - "Striatum_Exon_0209", - "HQF Striatum Exon (Feb09) RMA" - ], - [ - "DevStriatum_ILM6.2P14RInv_1110", - "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **" - ], - [ - "DevStriatum_ILM6.2P3RInv_1110", - "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **" - ] - ], - "T Cell (helper)": [ - [ - "RTHC_0211_R", - "HZI Thelp M430v2 (Feb11) RMA" - ] - ], - "T Cell (regulatory)": [ - [ - "RTC_1106_R", - "HZI Treg M430v2 (Feb11) RMA" - ] - ], - "Thymus": [ - [ - "Illum_BXD_Thy_1108", - "UWA Illumina Thymus (Nov08) RSN **" - ] - ], - "Ventral Tegmental Area": [ - [ - "VCUEtOH_0609_R", - "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **" - ], - [ - "VCUSal_0609_R", - "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **" - ], - [ - "VCUEtvsSal_0609_R", - "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **" - ] - ] - }, - "BXH": { - "Cartilage": [ - [ - "UCLA_BXHBXD_CARTILAGE_V2", - "UCLA BXH and BXD Cartilage v2" - ], - [ - "UCLA_BXHBXD_CARTILAGE", - "UCLA BXH and BXD Cartilage" - ], - [ - "UCLA_BXH_CARTILAGE", - "UCLA BXH Cartilage" - ] - ], - "Genotypes": [ - [ - "BXHGeno", - "BXH Genotypes" - ] - ], - "Phenotypes": [ - [ - "BXHPublish", - "BXH Published Phenotypes" - ] - ] - }, - "CTB6F2": { - "Adipose": [ - [ - "UCLA_CTB6B6CTF2_ADIPOSE_MALE", - "UCLA CTB6B6CTF2 Adipose Male mlratio **" - ], - [ - "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE", - "UCLA CTB6B6CTF2 Adipose Female mlratio **" - ], - [ - "UCLA_CTB6B6CTF2_ADIPOSE_2005", - "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **" - ] - ], - "Brain": [ - [ - "UCLA_CTB6B6CTF2_BRAIN_MALE", - "UCLA CTB6B6CTF2 Brain Male mlratio **" - ], - [ - "UCLA_CTB6B6CTF2_BRAIN_FEMALE", - "UCLA CTB6B6CTF2 Brain Female mlratio **" - ], - [ - "UCLA_CTB6B6CTF2_BRAIN_2005", - "UCLA CTB6/B6CTF2 Brain (2005) mlratio **" - ] - ], - "Genotypes": [ - [ - "CTB6F2Geno", - "CTB6F2 Genotypes" - ] - ], - "Liver": [ - [ - "UCLA_CTB6B6CTF2_LIVER_MALE", - "UCLA CTB6B6CTF2 Liver Male mlratio **" - ], - [ - "UCLA_CTB6B6CTF2_LIVER_FEMALE", - "UCLA CTB6B6CTF2 Liver Female mlratio **" - ], - [ - "UCLA_CTB6B6CTF2_LIVER_2005", - "UCLA CTB6/B6CTF2 Liver (2005) mlratio **" - ] - ], - "Muscle": [ - [ - "UCLA_CTB6B6CTF2_MUSCLE_MALE", - "UCLA CTB6B6CTF2 Muscle Male mlratio **" - ], - [ - "UCLA_CTB6B6CTF2_MUSCLE_FEMALE", - "UCLA CTB6B6CTF2 Muscle Female mlratio **" - ], - [ - "UCLA_CTB6B6CTF2_MUSCLE_2005", - "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **" - ] - ], - "Phenotypes": [ - [ - "CTB6F2Publish", - "CTB6F2 Published Phenotypes" - ] - ] - }, - "CXB": { - "Genotypes": [ - [ - "CXBGeno", - "CXB Genotypes" - ] - ], - "Hippocampus": [ - [ - "HC_M2CB_1205_R", - "Hippocampus Consortium M430v2 CXB (Dec05) RMA" - ], - [ - "HC_M2CB_1205_P", - "Hippocampus Consortium M430v2 CXB (Dec05) PDNN" - ] - ], - "Phenotypes": [ - [ - "CXBPublish", - "CXB Published Phenotypes" - ] - ], - "Spleen": [ - [ - "STSPL_1107_R", - 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"Brain mRNA" - ] - ], - "CANDLE": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Newborn Cord Blood", - "Newborn Cord Blood mRNA" - ] - ], - "CEPH-2004": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Lymphoblast B-cell", - "Lymphoblast B-cell mRNA" - ] - ], - "HB": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Cerebellum", - "Cerebellum mRNA" - ], - [ - "Prefrontal Cortex", - "Prefrontal Cortex mRNA" - ], - [ - "Primary Visual Cortex", - "Primary Visual Cortex mRNA" - ] - ], - "HLC": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Liver", - "Liver mRNA" - ] - ], - "HSB": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Amygdala", - "Amygdala mRNA" - ], - [ - "Caudal Ganglionic Eminence", - "Caudal Ganglionic Eminence mRNA" - ], - [ - "Cerebellar Cortex", - "Cerebellar Cortex mRNA" - ], - [ - "Diencephalon", - "Diencephalon mRNA" - ], - [ - "Dorsal Thalamus", - "Dorsal Thalamus mRNA" - ], - [ - "Dorsolateral Prefrontal Cortex", - "Dorsolateral Prefrontal Cortex mRNA" - ], - [ - "Frontal Cerebral Wall", - "Frontal Cerebral Wall mRNA" - ], - [ - "Hippocampus", - "Hippocampus mRNA" - ], - [ - "Inferior Temporal Cortex", - "Inferior Temporal Cortex mRNA" - ], - [ - "Lateral Ganglionic Eminence", - "Lateral Ganglionic Eminence mRNA" - ], - [ - "Medial Ganglionic Eminence", - "Medial Ganglionic Eminence mRNA" - ], - [ - "Medial Prefrontal Cortex", - "Medial Prefrontal Cortex mRNA" - ], - [ - "Mediodorsal Nucleus of Thalamus", - "Mediodorsal Nucleus of Thalamus mRNA" - ], - [ - "Occipital Cerebral Wall", - "Occipital Cerebral Wall mRNA" - ], - [ - "Orbital Prefrontal Cortex", - "Orbital Prefrontal Cortex mRNA" - ], - [ - "Parietal Cerebral Wall", - "Parietal Cerebral Wall mRNA" - ], - [ - "Posterior Inferior Parietal Cortex", - "Posterior Inferior Parietal Cortex mRNA" - ], - [ - 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"Nucleus Accumbens mRNA" - ], - [ - "Prefrontal Cortex", - "Prefrontal Cortex mRNA" - ] - ] - }, - "mouse": { - "AKXD": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Mammary Tumors", - "Mammary Tumors mRNA" - ] - ], - "AXBXA": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Eye", - "Eye mRNA" - ] - ], - "B6BTBRF2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Liver", - "Liver mRNA" - ] - ], - "B6D2F2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Brain", - "Brain mRNA" - ] - ], - "BDF2-1999": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Liver", - "Liver mRNA" - ] - ], - "BDF2-2005": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Striatum", - "Striatum mRNA" - ] - ], - "BHF2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Adipose", - "Adipose mRNA" - ], - [ - "Brain", - "Brain mRNA" - ], - [ - "Liver", - "Liver mRNA" - ], - [ - "Muscle", - "Muscle mRNA" - ] - ], - "BHHBF2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Adipose", - "Adipose mRNA" - ], - [ - "Brain", - "Brain mRNA" - ], - [ - "Liver", - "Liver mRNA" - ], - [ - "Muscle", - "Muscle mRNA" - ] - ], - "BXD": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Amygdala", - "Amygdala mRNA" - ], - [ - "Brain", - "Brain mRNA" - ], - [ - "Cartilage", - "Cartilage mRNA" - ], - [ - "Cerebellum", - "Cerebellum mRNA" - ], - [ - "Eye", - "Eye mRNA" - ], - [ - "Hematopoietic Cells", - "Hematopoietic Cells mRNA" - ], - [ - "Hippocampus", - "Hippocampus mRNA" - ], - [ - "Hypothalamus", - "Hypothalamus mRNA" - ], - [ - "Kidney", - "Kidney mRNA" - ], - [ - "Leucocytes", - "Leucocytes mRNA" - ], - [ - "Liver", - "Liver mRNA" - ], - [ - "Lung", - "Lung mRNA" - ], - [ - "Midbrain", - "Midbrain mRNA" - ], - [ - "Muscle", - "Muscle mRNA" - ], - [ - "Neocortex", - "Neocortex mRNA" - ], - [ - "Nucleus Accumbens", - "Nucleus Accumbens mRNA" - ], - [ - "Prefrontal Cortex", - "Prefrontal Cortex mRNA" - ], - [ - "Retina", - "Retina mRNA" - ], - [ - "Spleen", - "Spleen mRNA" - ], - [ - "Striatum", - "Striatum mRNA" - ], - [ - "T Cell (helper)", - "T Cell (helper) mRNA" - ], - [ - "T Cell (regulatory)", - "T Cell (regulatory) mRNA" - ], - [ - "Thymus", - "Thymus mRNA" - ], - [ - "Ventral Tegmental Area", - "Ventral Tegmental Area mRNA" - ] - ], - "BXH": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Cartilage", - "Cartilage mRNA" - ] - ], - "CTB6F2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Adipose", - "Adipose mRNA" - ], - [ - "Brain", - "Brain mRNA" - ], - [ - "Liver", - "Liver mRNA" - ], - [ - "Muscle", - "Muscle mRNA" - ] - ], - "CXB": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - 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[ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Adrenal Gland", - "Adrenal Gland mRNA" - ], - [ - "Heart", - "Heart mRNA" - ], - [ - "Hippocampus", - "Hippocampus mRNA" - ], - [ - "Kidney", - "Kidney mRNA" - ], - [ - "Liver", - "Liver mRNA" - ], - [ - "Peritoneal Fat", - "Peritoneal Fat mRNA" - ] - ], - "SRxSHRSPF2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Eye", - "Eye mRNA" - ] - ] - }, - "soybean": { - "J12XJ58F2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ] - }, - "tomato": { - "LXP": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ] - } - } -}
\ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_items.js b/wqflask/wqflask/static/new/javascript/dataset_select_items.js deleted file mode 100755 index 33ff34cb..00000000 --- a/wqflask/wqflask/static/new/javascript/dataset_select_items.js +++ /dev/null @@ -1,773 +0,0 @@ -window.sArr = [ -{txt:'',val:''}, -{txt:'Human',val:'human'}, -{txt:'Macaque monkey',val:'macaque monkey'}, -{txt:'Mouse',val:'mouse'}, -{txt:'Rat',val:'rat'}, -{txt:'Drosophila',val:'drosophila'}, -{txt:'Arabidopsis thaliana',val:'arabidopsis'}, -{txt:'Barley',val:'barley'}, -{txt:'Soybean',val:'soybean'}, -{txt:'Tomato',val:'tomato'}, -{txt:'All Species',val:'All Species'}]; - -window.gArr = [ -{txt:'',val:''}, -{txt:'AD Cases & Controls (Liang)',val:'AD-cases-controls'}, -{txt:'AD Cases & Controls (Myers)',val:'AD-cases-controls-Myers'}, -{txt:'AKXD',val:'AKXD'}, -{txt:'AXB/BXA',val:'AXBXA'}, -{txt:'B6BTBRF2',val:'B6BTBRF2'}, -{txt:'B6D2F2',val:'B6D2F2'}, -{txt:'BayXSha',val:'BayXSha'}, -{txt:'BDF2 UCLA',val:'BDF2-1999'}, -{txt:'BDF2-2005',val:'BDF2-2005'}, -{txt:'BHF2 (Apoe Null) UCLA',val:'BHF2'}, -{txt:'BH/HB F2 UCLA',val:'BHHBF2'}, -{txt:'BXD',val:'BXD'}, -{txt:'BXH',val:'BXH'}, -{txt:'CANDLE',val:'CANDLE'}, -{txt:'CEPH Families',val:'CEPH-2004'}, -{txt:'ColXBur',val:'ColXBur'}, -{txt:'ColXCvi',val:'ColXCvi'}, -{txt:'CastB6/B6Cast F2 UCLA',val:'CTB6F2'}, -{txt:'CXB',val:'CXB'}, -{txt:'Drosophila Genetic Reference Panel',val:'DGRP'}, -{txt:'Harvard Brain Tissue Resource Center',val:'HB'}, -{txt:'Human Liver Cohort',val:'HLC'}, -{txt:'Heterogeneous Stock',val:'HS'}, -{txt:'Heterogeneous Stock Collaborative Cross',val:'HS-CC'}, -{txt:'KIN/YSM',val:'HSB'}, -{txt:'HXB/BXH',val:'HXBBXH'}, -{txt:'J12XJ58F2',val:'J12XJ58F2'}, -{txt:'LXP',val:'LXP'}, -{txt:'LXS',val:'LXS'}, -{txt:'Macaca fasicularis (Cynomolgus monkey)',val:'Macaca-fasicularis'}, -{txt:'Mouse Diversity Panel',val:'MDP'}, -{txt:'NZB/FVB N2 NCI',val:'NZBXFVB-N2'}, -{txt:'Oregon-R x 2b3',val:'Oregon-R_x_2b3'}, -{txt:'QSM',val:'QSM'}, -{txt:'UIOWA SRxSHRSP F2',val:'SRxSHRSPF2'}, -{txt:'SXM',val:'SXM'}, -{txt:'All Groups',val:'all groups'}]; - -window.tArr = [ -{txt:'',val:''}, -{txt:'Adipose mRNA',val:'Adipose'}, -{txt:'Adrenal Gland mRNA',val:'Adrenal Gland'}, -{txt:'Amygdala mRNA',val:'Amygdala'}, -{txt:'Brain mRNA',val:'Brain'}, -{txt:'Cartilage mRNA',val:'Cartilage'}, -{txt:'Caudal Ganglionic Eminence mRNA',val:'Caudal Ganglionic Eminence'}, -{txt:'Cerebellar Cortex mRNA',val:'Cerebellar Cortex'}, -{txt:'Cerebellum mRNA',val:'Cerebellum'}, -{txt:'Diencephalon mRNA',val:'Diencephalon'}, -{txt:'Dorsal Thalamus mRNA',val:'Dorsal Thalamus'}, -{txt:'Dorsolateral Prefrontal Cortex mRNA',val:'Dorsolateral Prefrontal Cortex'}, -{txt:'Embryo mRNA',val:'Embryo'}, -{txt:'Eye mRNA',val:'Eye'}, -{txt:'Frontal Cerebral Wall mRNA',val:'Frontal Cerebral Wall'}, -{txt:'Heart mRNA',val:'Heart'}, -{txt:'Hematopoietic Cells mRNA',val:'Hematopoietic Cells'}, -{txt:'Hippocampus mRNA',val:'Hippocampus'}, -{txt:'Hypothalamus mRNA',val:'Hypothalamus'}, -{txt:'Inferior Temporal Cortex mRNA',val:'Inferior Temporal Cortex'}, -{txt:'Kidney mRNA',val:'Kidney'}, -{txt:'Lateral Ganglionic Eminence mRNA',val:'Lateral Ganglionic Eminence'}, -{txt:'Leaf mRNA',val:'Leaf'}, -{txt:'Leucocytes mRNA',val:'Leucocytes'}, -{txt:'Liver mRNA',val:'Liver'}, -{txt:'Lung mRNA',val:'Lung'}, -{txt:'Lymphoblast B-cell mRNA',val:'Lymphoblast B-cell'}, -{txt:'Mammary Tumors mRNA',val:'Mammary Tumors'}, -{txt:'Medial Ganglionic Eminence mRNA',val:'Medial Ganglionic Eminence'}, -{txt:'Medial Prefrontal Cortex mRNA',val:'Medial Prefrontal Cortex'}, -{txt:'Mediodorsal Nucleus of Thalamus mRNA',val:'Mediodorsal Nucleus of Thalamus'}, -{txt:'Midbrain mRNA',val:'Midbrain'}, -{txt:'Muscle mRNA',val:'Muscle'}, -{txt:'Neocortex mRNA',val:'Neocortex'}, -{txt:'Newborn Cord Blood mRNA',val:'Newborn Cord Blood'}, -{txt:'Nucleus Accumbens mRNA',val:'Nucleus Accumbens'}, -{txt:'Occipital Cerebral Wall mRNA',val:'Occipital Cerebral Wall'}, -{txt:'Orbital Prefrontal Cortex mRNA',val:'Orbital Prefrontal Cortex'}, -{txt:'Parietal Cerebral Wall mRNA',val:'Parietal Cerebral Wall'}, -{txt:'Peritoneal Fat mRNA',val:'Peritoneal Fat'}, -{txt:'Posterior Inferior Parietal Cortex mRNA',val:'Posterior Inferior Parietal Cortex'}, -{txt:'Posterior Superior Temporal Cortex mRNA',val:'Posterior Superior Temporal Cortex'}, -{txt:'Prefrontal Cortex mRNA',val:'Prefrontal Cortex'}, -{txt:'Primary Auditory (A1) Cortex mRNA',val:'Primary Auditory (A1) Cortex'}, -{txt:'Primary Motor (M1) Cortex mRNA',val:'Primary Motor (M1) Cortex'}, -{txt:'Primary Somatosensory (S1) Cortex mRNA',val:'Primary Somatosensory (S1) Cortex'}, -{txt:'Primary Visual Cortex mRNA',val:'Primary Visual Cortex'}, -{txt:'Retina mRNA',val:'Retina'}, -{txt:'Spleen mRNA',val:'Spleen'}, -{txt:'Striatum mRNA',val:'Striatum'}, -{txt:'T Cell (helper) mRNA',val:'T Cell (helper)'}, -{txt:'T Cell (regulatory) 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-{txt:'UTHSC CEPH B-cells Illumina (Sep09) RankInv',val:'UT_CEPH_RankInv0909'}, -{txt:'Mouse kidney M430v2 Female (Aug06) RMA',val:'MA_M2F_0706_R'}, -{txt:'Mouse kidney M430v2 Male (Aug06) RMA',val:'MA_M2M_0706_R'}, -{txt:'Barley1 Leaf INOC TTKS (Aug09) RMA',val:'B1LI0809R'}, -{txt:'Barley1 Leaf INOC TTKS (Aug09) MAS5',val:'B1LI0809M5'}, -{txt:'Barley1 Leaf MOCK TTKS (Aug09) MAS5',val:'B1MI0809M5'}, -{txt:'Barley1 Leaf MOCK TTKS (Aug09) RMA',val:'B1MI0809R'}, -{txt:'GSE15222 Human Brain Myers (Apr09) RankInv',val:'GSE15222_F_RI_0409'}, -{txt:'GSE5281 Human Brain Full Liang (Jul09) RMA',val:'GSE5281_F_RMA0709'}, -{txt:'GSE5281 Human Brain Best 102 Liang (Jul09) RMA',val:'GSE5281_RMA0709'}, -{txt:'UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA',val:'UT_HippRatEx_RMA_0709'}, -{txt:'VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **',val:'VCUEtOH_0609_R'}, -{txt:'VCU BXD VTA Sal M430 2.0 (Jun09) RMA **',val:'VCUSal_0609_R'}, -{txt:'VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **',val:'VCUEtvsSal_0609_R'}, -{txt:'IoP Affy MOE 430v2 Spleen (May09) RMA',val:'IoP_SPL_RMA_0509'}, -{txt:'NCI Mammary M430v2 (Apr09) RMA',val:'NCI_Mam_Tum_RMA_0409'}, -{txt:'NCI Mammary LMT miRNA v2 (Apr09) RMA',val:'NCI_Agil_Mam_Tum_RMA_0409'}, -{txt:'MDC/CAS/UCL Liver 230v2 (Dec08) RMA',val:'HXB_Liver_1208'}, -{txt:'MDC/CAS/UCL Heart 230_V2 (Dec08) RMA',val:'HXB_Heart_1208'}, -{txt:'MDC/CAS/UCL Adrenal 230A (Dec08) RMA',val:'HXB_Adrenal_1208'}, -{txt:'UWA Illumina PBL (Nov08) RSN **',val:'Illum_BXD_PBL_1108'}, -{txt:'UWA Illumina Thymus (Nov08) RSN **',val:'Illum_BXD_Thy_1108'}, -{txt:'UWA Illumina Spleen (Nov08) RSN **',val:'Illum_BXD_Spl_1108'}, -{txt:'Monks CEPH B-cells Agilent (Dec04) Log10Ratio',val:'Human_1008'}, -{txt:'UTK Spleen ILM6.1 (Jan10) VST',val:'UTK_BXDSpl_VST_0110'}, -{txt:'Eye AXBXA Illumina V6.2(Oct08) RankInv Beta',val:'Eye_AXBXA_1008_RankInv'}, -{txt:'Eye M430v2 (Sep08) RMA',val:'Eye_M2_0908_R'}, -{txt:'Eye M430v2 Mutant Gpnmb (Sep08) RMA **',val:'Eye_M2_0908_R_NB'}, -{txt:'Eye M430v2 WT Gpnmb (Sep08) RMA **',val:'Eye_M2_0908_R_ND'}, -{txt:'Eye M430v2 Mutant Tyrp1 (Sep08) RMA **',val:'Eye_M2_0908_R_MT'}, -{txt:'Eye M430v2 WT WT (Sep08) RMA **',val:'Eye_M2_0908_WTWT'}, -{txt:'Eye M430v2 WT Tyrp1 (Sep08) RMA **',val:'Eye_M2_0908_R_WT'}, -{txt:'BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **',val:'BXD_GLA_0911'}, -{txt:'UCLA BXH and BXD Cartilage v2',val:'UCLA_BXHBXD_CARTILAGE_V2'}, -{txt:'UCLA BXD and BXH Cartilage v2',val:'UCLA_BXDBXH_CARTILAGE_V2'}, -{txt:'UCLA BXD and BXH Cartilage',val:'UCLA_BXDBXH_CARTILAGE'}, -{txt:'UCLA BXH and BXD Cartilage',val:'UCLA_BXHBXD_CARTILAGE'}, -{txt:'UCLA BHF2 Brain Male mlratio',val:'UCLA_BHF2_BRAIN_MALE'}, -{txt:'UCLA BHF2 Brain Female mlratio',val:'UCLA_BHF2_BRAIN_FEMALE'}, -{txt:'UCLA BHF2 Adipose Female mlratio',val:'UCLA_BHF2_ADIPOSE_FEMALE'}, -{txt:'UCLA BHF2 Adipose Male mlratio',val:'UCLA_BHF2_ADIPOSE_MALE'}, -{txt:'UCLA CTB6B6CTF2 Muscle Male mlratio **',val:'UCLA_CTB6B6CTF2_MUSCLE_MALE'}, -{txt:'UCLA CTB6B6CTF2 Liver Male mlratio **',val:'UCLA_CTB6B6CTF2_LIVER_MALE'}, -{txt:'UCLA CTB6B6CTF2 Brain Male mlratio **',val:'UCLA_CTB6B6CTF2_BRAIN_MALE'}, -{txt:'UCLA CTB6B6CTF2 Adipose Male mlratio **',val:'UCLA_CTB6B6CTF2_ADIPOSE_MALE'}, -{txt:'UCLA BHF2 Liver Male mlratio',val:'UCLA_BHF2_LIVER_MALE'}, -{txt:'UCLA BHF2 Liver Female mlratio',val:'UCLA_BHF2_LIVER_FEMALE'}, -{txt:'UCLA BHHBF2 Brain Female Only',val:'UCLA_BHHBF2_BRAIN_FEMALE'}, -{txt:'UCLA BHHBF2 Liver Female Only',val:'UCLA_BHHBF2_LIVER_FEMALE'}, -{txt:'UCLA BHHBF2 Muscle Male Only',val:'UCLA_BHHBF2_MUSCLE_MALE'}, -{txt:'UCLA BHHBF2 Muscle Female Only',val:'UCLA_BHHBF2_MUSCLE_FEMALE'}, -{txt:'UCLA BHHBF2 Liver Male Only',val:'UCLA_BHHBF2_LIVER_MALE'}, -{txt:'UCLA BHHBF2 Brain Male Only',val:'UCLA_BHHBF2_BRAIN_MALE'}, -{txt:'UCLA BHHBF2 Adipose Female Only',val:'UCLA_BHHBF2_ADIPOSE_FEMALE'}, -{txt:'UCLA BHHBF2 Adipose Male Only',val:'UCLA_BHHBF2_ADIPOSE_MALE'}, -{txt:'UCLA BHF2 Muscle Female mlratio **',val:'UCLA_BHF2_MUSCLE_FEMALE'}, -{txt:'UCLA BHF2 Muscle Male mlratio **',val:'UCLA_BHF2_MUSCLE_MALE'}, -{txt:'UCLA BXH Cartilage',val:'UCLA_BXH_CARTILAGE'}, -{txt:'UCLA BXD Cartilage',val:'UCLA_BXD_CARTILAGE'}, -{txt:'UCLA BHHBF2 Adipose (2005) mlratio **',val:'UCLA_BHHBF2_ADIPOSE_2005'}, -{txt:'UCLA BHHBF2 Brain (2005) mlratio **',val:'UCLA_BHHBF2_BRAIN_2005'}, -{txt:'UCLA BHHBF2 Liver (2005) mlratio **',val:'UCLA_BHHBF2_LIVER_2005'}, -{txt:'UCLA BHHBF2 Muscle (2005) mlratio **',val:'UCLA_BHHBF2_MUSCLE_2005'}, -{txt:'UCLA BHF2 Adipose (June05) mlratio',val:'UCLA_BHF2_ADIPOSE_0605'}, -{txt:'UCLA BDF2 Liver (1999) mlratio',val:'UCLA_BDF2_LIVER_1999'}, -{txt:'UCLA BHF2 Muscle (June05) mlratio **',val:'UCLA_BHF2_MUSCLE_0605'}, -{txt:'UCLA BHF2 Brain (June05) mlratio',val:'UCLA_BHF2_BRAIN_0605'}, -{txt:'UCLA BHF2 Liver (June05) mlratio',val:'UCLA_BHF2_LIVER_0605'}, -{txt:'HZI Lung M430v2 (Apr08) RMA',val:'HZI_0408_R'}, -{txt:'HZI Lung M430v2 (Apr08) MAS5',val:'HZI_0408_M'}, -{txt:'HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv',val:'HQFNeoc_0208_RankInv'}, -{txt:'VCU BXD NA Sal M430 2.0 (Oct07) RMA',val:'VCUSalo_1007_R'}, -{txt:'VCU BXD NA EtOH M430 2.0 (Oct07) RMA **',val:'VCUEtOH_1007_R'}, -{txt:'VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **',val:'VCUSal_1007_R'}, -{txt:'Stuart Spleen M430v2 (Nov07) RMA',val:'STSPL_1107_R'}, -{txt:'HQF BXD Striatum ILM6.1 (Nov07) RankInv',val:'UTHSC_1107_RankInv'}, -{txt:'Hippocampus Illumina (Aug07) LOESS',val:'Illum_LXS_Hipp_loess0807'}, -{txt:'Hippocampus Illumina (Aug07) LOESS_NB',val:'Illum_LXS_Hipp_loess_nb0807'}, -{txt:'Hippocampus Illumina (Aug07) QUANT',val:'Illum_LXS_Hipp_quant0807'}, -{txt:'Hippocampus Illumina (Aug07) QUANT_NB',val:'Illum_LXS_Hipp_quant_nb0807'}, -{txt:'Hippocampus Illumina (Aug07) RSN',val:'Illum_LXS_Hipp_rsn0807'}, -{txt:'Hippocampus Illumina (Aug07) RSN_NB',val:'Illum_LXS_Hipp_rsn_nb0807'}, -{txt:'VCU BXD PFC EtOH M430 2.0 (Dec06) RMA',val:'VCUEtOH_1206_R'}, -{txt:'VCU BXD PFC Sal M430 2.0 (Dec06) RMA',val:'VCUSal_1206_R'}, -{txt:'VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore',val:'VCUSal_1006_R'}, -{txt:'VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **',val:'VCU_PF_Air_0111_R'}, -{txt:'VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **',val:'VCU_PF_Et_0111_R'}, -{txt:'VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **',val:'VCU_PF_AvE_0111_Ss'}, -{txt:'Hippocampus Illumina (May07) RankInv',val:'Hipp_Illumina_RankInv_0507'}, -{txt:'VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **',val:'VCUEtOH_0806_R'}, -{txt:'VCU LXS PFC Sal M430A 2.0 (Aug06) RMA',val:'VCUSal_0806_R'}, -{txt:'VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **',val:'VCUEt_vs_Sal_0806_R'}, -{txt:'Barley1 Embryo gcRMA SCRI (Dec06)',val:'B139_K_1206_R'}, -{txt:'Barley1 Leaf MAS 5.0 SCRI (Dec06)',val:'B30_K_1206_M'}, -{txt:'Barley1 Leaf gcRMAn SCRI (Dec06)',val:'B30_K_1206_Rn'}, -{txt:'Barley1 Leaf gcRMA SCRI (Dec06)',val:'B30_K_1206_R'}, -{txt:'Barley1 Embryo MAS 5.0 SCRI (Dec06)',val:'B139_K_1206_M'}, -{txt:'UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA',val:'BR_M2_1106_R'}, -{txt:'HZI Treg M430v2 (Feb11) RMA',val:'RTC_1106_R'}, -{txt:'UIOWA Eye mRNA RAE230v2 (Sep06) RMA',val:'UIOWA_Eye_RMA_0906'}, -{txt:'Mouse kidney M430v2 Sex Balanced (Aug06) RMA',val:'MA_M2_0806_R'}, -{txt:'Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN',val:'MA_M2_0806_P'}, -{txt:'Mouse Kidney M430v2 (Jul06) PDNN',val:'MA_M2_0706_P'}, -{txt:'Mouse Kidney M430v2 (Jul06) RMA',val:'MA_M2_0706_R'}, -{txt:'Barley1 Embryo0 gcRMA SCRI (Apr06)',val:'B150_K_0406_R'}, -{txt:'INIA Brain mRNA M430 (Jun06) RMA',val:'IBR_M_0606_R'}, -{txt:'Hippocampus Consortium M430v2 (Jun06) PDNN',val:'HC_M2_0606_P'}, -{txt:'Hippocampus Consortium M430v2 (Jun06) MAS5',val:'HC_M2_0606_M'}, -{txt:'Hippocampus Consortium M430v2 (Jun06) RMA',val:'HC_M2_0606_R'}, -{txt:'INIA Brain mRNA M430 (Jan06) RMA',val:'IBR_M_0106_R'}, -{txt:'INIA Brain mRNA M430 (Jan06) PDNN',val:'IBR_M_0106_P'}, -{txt:'Hippocampus Consortium M430v2 CXB (Dec05) RMA',val:'HC_M2CB_1205_R'}, -{txt:'Hippocampus Consortium M430v2 CXB (Dec05) PDNN',val:'HC_M2CB_1205_P'}, -{txt:'UTHSC Brain mRNA U74Av2 (Nov05) PDNN',val:'BR_U_1105_P'}, -{txt:'UMUTAffy Hippocampus Exon (Feb09) RMA',val:'UMUTAffyExon_0209_RMA'}, -{txt:'UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv',val:'UT_ILM_BXD_hipp_NON_0909'}, -{txt:'UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv',val:'UT_ILM_BXD_hipp_NOS_0909'}, -{txt:'UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv',val:'UT_ILM_BXD_hipp_NOE_0909'}, -{txt:'UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv',val:'UT_ILM_BXD_hipp_RSS_0909'}, -{txt:'UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv',val:'UT_ILM_BXD_hipp_RSE_0909'}, -{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN',val:'SA_M2_0905_P'}, -{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA',val:'SA_M2_0905_R'}, -{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5',val:'SA_M2_0905_M'}, -{txt:'UTHSC Brain mRNA U74Av2 (Aug05) RMA',val:'BR_U_0805_R'}, -{txt:'UTHSC Brain mRNA U74Av2 (Aug05) PDNN',val:'BR_U_0805_P'}, -{txt:'UTHSC Brain mRNA U74Av2 (Aug05) MAS5',val:'BR_U_0805_M'}, -{txt:'MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5',val:'FT_2A_0805_M'}, -{txt:'OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA',val:'BRF2_M_0805_R'}, -{txt:'OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN',val:'BRF2_M_0805_P'}, -{txt:'OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5',val:'BRF2_M_0805_M'}, -{txt:'MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8',val:'FT_2A_0605_Rz'}, -{txt:'HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean',val:'SA_M2_0405_MC'}, -{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN',val:'GCB_M2_0505_P'}, -{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA',val:'GCB_M2_0505_R'}, -{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5',val:'GCB_M2_0505_M'}, -{txt:'MDC/CAS/ICL Kidney 230A (Apr05) MAS5',val:'KI_2A_0405_M'}, -{txt:'HBP Rosen Striatum M430V2 (Apr05) RMA Clean',val:'SA_M2_0405_RC'}, -{txt:'HBP Rosen Striatum M430V2 (Apr05) PDNN Clean',val:'SA_M2_0405_PC'}, -{txt:'HBP Rosen Striatum M430V2 (Apr05) SScore',val:'SA_M2_0405_SS'}, -{txt:'HBP Rosen Striatum M430V2 (Apr05) RMA Orig',val:'SA_M2_0405_RR'}, -{txt:'MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8',val:'KI_2A_0405_Rz'}, -{txt:'MDC/CAS/ICL Kidney 230A (Apr05) RMA',val:'KI_2A_0405_R'}, -{txt:'SJUT Cerebellum mRNA M430 (Mar05) PDNN',val:'CB_M_0305_P'}, -{txt:'SJUT Cerebellum mRNA M430 (Mar05) MAS5',val:'CB_M_0305_M'}, -{txt:'SJUT Cerebellum mRNA M430 (Mar05) RMA',val:'CB_M_0305_R'}, -{txt:'HQF Striatum Exon (Feb09) RMA',val:'Striatum_Exon_0209'}, -{txt:'BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv',val:'DevNeocortex_ILM6.2P14RInv_1110'}, -{txt:'BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **',val:'DevStriatum_ILM6.2P14RInv_1110'}, -{txt:'BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **',val:'DevStriatum_ILM6.2P3RInv_1110'}, -{txt:'BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv',val:'DevNeocortex_ILM6.2P3RInv_1110'}, -{txt:'SJUT Cerebellum mRNA M430 (Oct04) MAS5',val:'CB_M_1004_M'}, -{txt:'SJUT Cerebellum mRNA M430 (Oct04) PDNN',val:'CB_M_1004_P'}, -{txt:'SJUT Cerebellum mRNA M430 (Oct04) RMA',val:'CB_M_1004_R'}, -{txt:'(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5',val:'LVF2_M_0704_M'}, -{txt:'(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA',val:'LVF2_M_0704_R'}, -{txt:'NCI Mammary mRNA M430 (July04) MAS5',val:'MA_M_0704_M'}, -{txt:'NCI Mammary mRNA M430 (July04) RMA',val:'MA_M_0704_R'}, -{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN',val:'BRF2_M_0304_P'}, -{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA',val:'BRF2_M_0304_R'}, -{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5',val:'BRF2_M_0304_M'}, -{txt:'GNF Stem Cells U74Av2 (Mar04) RMA',val:'HC_U_0304_R'}, -{txt:'INIA Brain mRNA M430 (Feb04) PDNN',val:'CB_M_0204_P'}, -{txt:'SJUT Cerebellum mRNA M430 (Oct03) MAS5',val:'CB_M_1003_M'}, -{txt:'Hippocampus Illumina NOS (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NOS_1008'}, -{txt:'Hippocampus Illumina RSE (Oct08) RankInv beta',val:'Illum_LXS_Hipp_RSE_1008'}, -{txt:'GSE9588 Human Liver Normal (Mar11) Females',val:'HLCF_0311'}, -{txt:'Hippocampus Illumina RSS (Oct08) RankInv beta',val:'Illum_LXS_Hipp_RSS_1008'}, -{txt:'Hippocampus Illumina NOE (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NOE_1008'}, -{txt:'Hippocampus Illumina NON (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NON_1008'}, -{txt:'CANDLE Published Phenotypes',val:'CANDLEPublish'}, -{txt:'HLC Published Phenotypes',val:'HLCPublish'}, -{txt:'AKXD Genotypes',val:'AKXDGeno'}, -{txt:'AXBXA Published Phenotypes',val:'AXBXAPublish'}, -{txt:'AXBXA Genotypes',val:'AXBXAGeno'}, -{txt:'B6BTBRF2 Published Phenotypes',val:'B6BTBRF2Publish'}, -{txt:'B6BTBRF2 Genotypes',val:'B6BTBRF2Geno'}, -{txt:'B6D2F2 Genotypes',val:'B6D2F2Geno'}, -{txt:'BDF2-1999 Genotypes',val:'BDF2-1999Geno'}, -{txt:'BDF2-2005 Genotypes',val:'BDF2-2005Geno'}, -{txt:'BHF2 Genotypes',val:'BHF2Geno'}, -{txt:'BHHBF2 Genotypes',val:'BHHBF2Geno'}, -{txt:'BXD Published Phenotypes',val:'BXDPublish'}, -{txt:'BXD Genotypes',val:'BXDGeno'}, -{txt:'BXH Published Phenotypes',val:'BXHPublish'}, -{txt:'BXH Genotypes',val:'BXHGeno'}, -{txt:'CTB6F2 Published Phenotypes',val:'CTB6F2Publish'}, -{txt:'CTB6F2 Genotypes',val:'CTB6F2Geno'}, -{txt:'CXB Published Phenotypes',val:'CXBPublish'}, -{txt:'CXB Genotypes',val:'CXBGeno'}, -{txt:'LXS Published Phenotypes',val:'LXSPublish'}, -{txt:'LXS Genotypes',val:'LXSGeno'}, -{txt:'Mouse Phenome Database',val:'MDPPublish'}, -{txt:'MDP Genotypes',val:'MDPGeno'}, -{txt:'NZBXFVB-N2 Published Phenotypes',val:'NZBXFVB-N2Publish'}, -{txt:'HXBBXH Published Phenotypes',val:'HXBBXHPublish'}, -{txt:'HXBBXH Genotypes',val:'HXBBXHGeno'}, -{txt:'BayXSha Published Phenotypes',val:'BayXShaPublish'}, -{txt:'BayXSha Genotypes',val:'BayXShaGeno'}, -{txt:'ColXBur Published Phenotypes',val:'ColXBurPublish'}, -{txt:'ColXBur Genotypes',val:'ColXBurGeno'}, -{txt:'ColXCvi Published Phenotypes',val:'ColXCviPublish'}, -{txt:'ColXCvi Genotypes',val:'ColXCviGeno'}, -{txt:'SXM Published Phenotypes',val:'SXMPublish'}, -{txt:'SXM Genotypes',val:'SXMGeno'}, -{txt:'J12XJ58F2 Published Phenotypes',val:'J12XJ58F2Publish'}, -{txt:'LXP Published Phenotypes',val:'LXPPublish'}, -{txt:'All Phenotypes',val:'_allPublish'}]; - -window.lArr = [ - null, -[1,1,4,79], -[1,1,4,80], -[1,1,4,127], -[1,1,4,128], -[1,2,4,1], -[1,2,4,2], -[1,2,4,126], -[1,14,59,288], -[1,14,34,32], -[1,15,26,119], -[1,15,26,142], -[1,21,8,60], -[1,21,8,61], -[1,21,8,63], -[1,21,8,67], -[1,21,42,62], -[1,21,42,65], -[1,21,42,66], -[1,21,42,69], -[1,21,46,64], -[1,21,46,68], -[1,21,46,70], -[1,21,46,71], -[1,22,59,289], -[1,22,24,76], -[1,22,24,77], -[1,22,24,284], -[1,25,3,33], -[1,25,6,37], -[1,25,7,36], -[1,25,9,54], -[1,25,10,56], -[1,25,11,53], -[1,25,14,38], -[1,25,17,51], -[1,25,19,46], -[1,25,21,47], -[1,25,28,55], -[1,25,29,52], -[1,25,30,49], -[1,25,36,58], -[1,25,37,59], -[1,25,38,57], -[1,25,40,50], -[1,25,41,45], -[1,25,43,34], 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-[5,33,58,110], -[6,7,59,315], -[6,7,60,316], -[6,16,59,317], -[6,16,60,318], -[6,17,59,319], -[6,17,60,320], -[7,34,22,122], -[7,34,22,123], -[7,34,22,124], -[7,34,22,125], -[7,36,59,321], -[7,36,60,322], -[7,36,12,211], -[7,36,12,215], -[7,36,12,223], -[7,36,22,212], -[7,36,22,213], -[7,36,22,214], -[8,27,59,323], -[9,28,59,324], -[10,37,59,325]]; - - diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee b/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee index df891826..a58efe2e 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee +++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee @@ -7,7 +7,7 @@ $ -> populate_species() apply_default() - $.ajax '/static/new/javascript/dataset_menu_structure', + $.ajax '/static/new/javascript/dataset_menu_structure.json', dataType: 'json' success: process_json @@ -15,6 +15,7 @@ $ -> species_list = @jdata.species redo_dropdown($('#species'), species_list) populate_group() + window.populate_species = populate_species populate_group = -> console.log("in populate group") @@ -22,6 +23,7 @@ $ -> group_list = @jdata.groups[species] redo_dropdown($('#group'), group_list) populate_type() + window.populate_group = populate_group populate_type = -> species = $('#species').val() @@ -29,6 +31,7 @@ $ -> type_list = @jdata.types[species][group] redo_dropdown($('#type'), type_list) populate_dataset() + window.populate_type = populate_type populate_dataset = -> species = $('#species').val() @@ -38,6 +41,7 @@ $ -> dataset_list = @jdata.datasets[species][group][type] console.log("pop_dataset:", dataset_list) redo_dropdown($('#dataset'), dataset_list) + window.populate_dataset = populate_dataset redo_dropdown = (dropdown, items) -> console.log("in redo:", dropdown, items) @@ -99,7 +103,9 @@ $ -> $("##{item[0]}").val(defaults[item[0]]) if item[1] - window["populate_" + item[1]] + populate_function = "populate_" + item[1] + console.log("Calling:", populate_function) + window[populate_function]() diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js index 655aac15..681e4301 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js +++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js @@ -9,7 +9,7 @@ populate_species(); return apply_default(); }; - $.ajax('/static/new/javascript/dataset_menu_structure', { + $.ajax('/static/new/javascript/dataset_menu_structure.json', { dataType: 'json', success: process_json }); @@ -19,6 +19,7 @@ redo_dropdown($('#species'), species_list); return populate_group(); }; + window.populate_species = populate_species; populate_group = function() { var group_list, species; console.log("in populate group"); @@ -27,6 +28,7 @@ redo_dropdown($('#group'), group_list); return populate_type(); }; + window.populate_group = populate_group; populate_type = function() { var group, species, type_list; species = $('#species').val(); @@ -35,6 +37,7 @@ redo_dropdown($('#type'), type_list); return populate_dataset(); }; + window.populate_type = populate_type; populate_dataset = function() { var dataset_list, group, species, type; species = $('#species').val(); @@ -45,6 +48,7 @@ console.log("pop_dataset:", dataset_list); return redo_dropdown($('#dataset'), dataset_list); }; + window.populate_dataset = populate_dataset; redo_dropdown = function(dropdown, items) { var item, _i, _len, _results; console.log("in redo:", dropdown, items); @@ -99,7 +103,7 @@ }); }; apply_default = function() { - var defaults, item, _i, _len, _ref, _results; + var defaults, item, populate_function, _i, _len, _ref, _results; defaults = $.cookie('search_defaults'); if (!defaults) { return; @@ -111,7 +115,9 @@ item = _ref[_i]; $("#" + item[0]).val(defaults[item[0]]); if (item[1]) { - _results.push(window["populate_" + item[1]]); + populate_function = "populate_" + item[1]; + console.log("Calling:", populate_function); + _results.push(window[populate_function]()); } else { _results.push(void 0); } |