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authorDannyArends2015-09-19 13:15:49 +0200
committerDannyArends2015-09-19 13:15:49 +0200
commit60a6b72d8f739afaac6a282ea20f713e4fc5487d (patch)
tree2e3c83063d4c3821e985a681359ecd98689c79ed /wqflask
parentb62b1c8e1d93bcd637ea531efbe55f8aa7aa6656 (diff)
downloadgenenetwork2-60a6b72d8f739afaac6a282ea20f713e4fc5487d.tar.gz
Adding a todo list to the code, for issue: genenetwork/genenetwork2#119
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/wgcna/wgcna_analysis.py6
1 files changed, 6 insertions, 0 deletions
diff --git a/wqflask/wqflask/wgcna/wgcna_analysis.py b/wqflask/wqflask/wgcna/wgcna_analysis.py
index 37a37313..84cdc241 100644
--- a/wqflask/wqflask/wgcna/wgcna_analysis.py
+++ b/wqflask/wqflask/wgcna/wgcna_analysis.py
@@ -54,6 +54,12 @@ class WGCNA(object):
self.results[t] = strains
print("Retrieved phenotype data from database")
+ # TODO:
+ # Load data into R
+ # Calculate a good soft threshold
+ # Create block wise modules using WGCNA
+ # How many modules and how many gene per module ?
+ # Show the iconic WCGNA plot of the modules in the hanging tree
def process_results(self, results):
print("Processing WGCNA output")