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| author | zsloan | 2019-09-24 12:17:08 -0500 |
|---|---|---|
| committer | zsloan | 2019-09-24 12:17:08 -0500 |
| commit | 233ed8a88c3f5681ed984a965080be2388e4ebbf (patch) | |
| tree | 2e29fa850eab94a1f63a97a84dc81ea69bf6f3b8 /wqflask | |
| parent | ed2ec7bb4cc9bd160bc19118354a575ec9351329 (diff) | |
| download | genenetwork2-233ed8a88c3f5681ed984a965080be2388e4ebbf.tar.gz | |
Fixed issue that caused GEMMA to not work with genotype files without cM, though this issue still needs to be dealt with to get the new qtlreaper working
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/utility/gen_geno_ob.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/wqflask/utility/gen_geno_ob.py b/wqflask/utility/gen_geno_ob.py index 5172369f..e8780879 100644 --- a/wqflask/utility/gen_geno_ob.py +++ b/wqflask/utility/gen_geno_ob.py @@ -115,7 +115,10 @@ class Locus(object): def __init__(self, marker_row, geno_ob): self.chr = marker_row[0] self.name = marker_row[1] - self.cM = float(marker_row[geno_ob.cm_column]) + try: + self.cM = float(marker_row[geno_ob.cm_column]) + except: + self.cM = float(marker_row[geno_ob.mb_column]) if geno_ob.mb_exists else 0 self.Mb = float(marker_row[geno_ob.mb_column]) if geno_ob.mb_exists else None geno_table = { |