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| author | zsloan | 2021-09-13 19:58:43 +0000 |
|---|---|---|
| committer | zsloan | 2021-09-13 19:58:43 +0000 |
| commit | 2ef7cad06cc1dcde61c91d2eafef002d25cb194e (patch) | |
| tree | a225fd7e69888504a0e6de074d75fd71f180800b /wqflask | |
| parent | 75132a5382d32d9332f743aca0e406ae6137d7e5 (diff) | |
| download | genenetwork2-2ef7cad06cc1dcde61c91d2eafef002d25cb194e.tar.gz | |
Add trait name and trait hash to exported mapping results
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/marker_regression/run_mapping.py | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py index 2f90b475..b101b948 100644 --- a/wqflask/wqflask/marker_regression/run_mapping.py +++ b/wqflask/wqflask/marker_regression/run_mapping.py @@ -422,8 +422,9 @@ class RunMapping: total_markers = len(self.qtl_results) with Bench("Exporting Results"): - export_mapping_results(self.dataset, self.this_trait, self.qtl_results, self.mapping_results_path, - self.mapping_scale, self.score_type, self.transform, self.covariates, self.n_samples) + export_mapping_results(self.dataset, self.this_trait, self.qtl_results, + self.mapping_results_path, self.mapping_scale, self.score_type, + self.transform, self.covariates, self.n_samples, self.vals_hash) with Bench("Trimming Markers for Figure"): if len(self.qtl_results) > 30000: @@ -541,13 +542,15 @@ class RunMapping: return trimmed_genotype_data -def export_mapping_results(dataset, trait, markers, results_path, mapping_scale, score_type, transform, covariates, n_samples): +def export_mapping_results(dataset, trait, markers, results_path, mapping_scale, score_type, transform, covariates, n_samples, vals_hash): with open(results_path, "w+") as output_file: output_file.write( "Time/Date: " + datetime.datetime.now().strftime("%x / %X") + "\n") output_file.write( "Population: " + dataset.group.species.title() + " " + dataset.group.name + "\n") output_file.write("Data Set: " + dataset.fullname + "\n") + output_file.write("Trait: " + trait.display_name + "\n") + output_file.write("Trait Hash: " + vals_hash + "\n") output_file.write("N Samples: " + str(n_samples) + "\n") if len(transform) > 0: transform_text = "Transform - " |