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authorPjotr Prins2018-03-19 13:06:13 +0000
committerPjotr Prins2018-03-26 09:29:29 +0000
commit3c8089e2c3957ca2d4a5906249b4818d367221dc (patch)
treec53a23c854ebeb0dbefa2fdb4a05b73b752d5322 /wqflask
parentc3fab61242796ef4b7544d784fceb39f4545828e (diff)
downloadgenenetwork2-3c8089e2c3957ca2d4a5906249b4818d367221dc.tar.gz
- Disabled PYTHONPATH injection - fix Guix instead, see https://github.com/pjotrp/genenetwork2/commit/63a5c8a42ad02e9126bb207465ff5eca98f6515d
- Renamed WQFLASK_SETTINGS to GN2_SETTINGS
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/utility/tools.py15
-rw-r--r--wqflask/wqflask/__init__.py4
2 files changed, 3 insertions, 16 deletions
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index 8c9fed96..bae3a7f4 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -54,7 +54,7 @@ def get_setting(command_id,guess=None):
# print("Looking for "+command_id+"\n")
command = value(os.environ.get(command_id))
if command is None or command == "":
- command = OVERRIDES.get(command_id)
+ command = OVERRIDES.get(command_id) # currently not in use
if command is None:
# ---- Check whether setting exists in app
command = value(app.config.get(command_id))
@@ -285,18 +285,5 @@ assert_dir(JS_TWITTER_POST_FETCHER_PATH)
from six import string_types
-if os.environ.get('WQFLASK_OVERRIDES'):
- jsonfn = get_setting('WQFLASK_OVERRIDES')
- logger.info("WQFLASK_OVERRIDES: %s" % jsonfn)
- with open(jsonfn) as data_file:
- overrides = json.load(data_file)
- for k in overrides:
- cmd = overrides[k]
- if isinstance(cmd, string_types):
- OVERRIDES[k] = eval(cmd)
- else:
- OVERRIDES[k] = cmd
- logger.debug(OVERRIDES)
-
# assert_file(PHEWAS_FILES+"/auwerx/PheWAS_pval_EMMA_norm.RData")
assert_file(JS_TWITTER_POST_FETCHER_PATH+"/js/twitterFetcher_min.js")
diff --git a/wqflask/wqflask/__init__.py b/wqflask/wqflask/__init__.py
index 2188ce17..bc8e9900 100644
--- a/wqflask/wqflask/__init__.py
+++ b/wqflask/wqflask/__init__.py
@@ -13,8 +13,8 @@ logging.basicConfig(level=logging.INFO)
app = Flask(__name__)
app.config.from_object('cfg.default_settings') # Get the defaults from cfg.default_settings
-app.config.from_envvar('WQFLASK_SETTINGS') # See http://flask.pocoo.org/docs/config/#configuring-from-files
-# Note we also use WQFLASK_OVERRIDES
+app.config.from_envvar('GN2_SETTINGS') # See http://flask.pocoo.org/docs/config/#configuring-from-files
+# Note no longer use the badly named WQFLASK_OVERRIDES (nyi)
app.jinja_env.globals.update(
undefined = jinja2.StrictUndefined,