Use logger.info instead of logger.debug, fixes https://github.com/genenetwork/genenetwork2/issues/296

1 files changed, 33 insertions, 33 deletions

diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 4e81c29c..8476b6c5 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -123,7 +123,7 @@ def handle_bad_request(e):
 @app.route("/")
 def index_page():
     logger.info("Sending index_page")
-    logger.error(request.url)
+    logger.info(request.url)
     params = request.args
     if 'import_collections' in params:
         import_collections = params['import_collections']
@@ -141,7 +141,7 @@ def index_page():
 def tmp_page(img_path):
     logger.info("In tmp_page")
     logger.info("img_path:", img_path)
-    logger.error(request.url)
+    logger.info(request.url)
     initial_start_vars = request.form
     logger.info("initial_start_vars:", initial_start_vars)
     imgfile = open(GENERATED_IMAGE_DIR + img_path, 'rb')
@@ -174,7 +174,7 @@ def twitter(filename):
 @app.route("/search", methods=('GET',))
 def search_page():
     logger.info("in search_page")
-    logger.error(request.url)
+    logger.info(request.url)
     if 'info_database' in request.args:
         logger.info("Going to sharing_info_page")
         template_vars = sharing_info_page()
@@ -213,7 +213,7 @@ def search_page():
 
 @app.route("/gsearch", methods=('GET',))
 def gsearchact():
-    logger.error(request.url)
+    logger.info(request.url)
     result = gsearch.GSearch(request.args).__dict__
     type = request.args['type']
     if type == "gene":
@@ -224,7 +224,7 @@ def gsearchact():
 @app.route("/gsearch_updating", methods=('POST',))
 def gsearch_updating():
     logger.info("REQUEST ARGS:", request.values)
-    logger.error(request.url)
+    logger.info(request.url)
     result = update_search_results.GSearch(request.args).__dict__
     return result['results']
     # type = request.args['type']
@@ -235,31 +235,31 @@ def gsearch_updating():
 
 @app.route("/docedit")
 def docedit():
-    logger.error(request.url)
+    logger.info(request.url)
     doc = docs.Docs(request.args['entry'])
     return render_template("docedit.html", **doc.__dict__)
 
 @app.route('/generated/<filename>')
 def generated_file(filename):
-    logger.error(request.url)
+    logger.info(request.url)
     return send_from_directory(GENERATED_IMAGE_DIR,filename)
 
 @app.route("/help")
 def help():
-    logger.error(request.url)
+    logger.info(request.url)
     doc = docs.Docs("help")
     return render_template("docs.html", **doc.__dict__)
 
 @app.route("/wgcna_setup", methods=('POST',))
 def wcgna_setup():
     logger.info("In wgcna, request.form is:", request.form)             # We are going to get additional user input for the analysis
-    logger.error(request.url)
+    logger.info(request.url)
     return render_template("wgcna_setup.html", **request.form)          # Display them using the template
 
 @app.route("/wgcna_results", methods=('POST',))
 def wcgna_results():
     logger.info("In wgcna, request.form is:", request.form)
-    logger.error(request.url)
+    logger.info(request.url)
     wgcna = wgcna_analysis.WGCNA()                                # Start R, load the package and pointers and create the analysis
     wgcnaA = wgcna.run_analysis(request.form)                     # Start the analysis, a wgcnaA object should be a separate long running thread
     result = wgcna.process_results(wgcnaA)                        # After the analysis is finished store the result
@@ -268,13 +268,13 @@ def wcgna_results():
 @app.route("/ctl_setup", methods=('POST',))
 def ctl_setup():
     logger.info("In ctl, request.form is:", request.form)             # We are going to get additional user input for the analysis
-    logger.error(request.url)
+    logger.info(request.url)
     return render_template("ctl_setup.html", **request.form)          # Display them using the template
 
 @app.route("/ctl_results", methods=('POST',))
 def ctl_results():
     logger.info("In ctl, request.form is:", request.form)
-    logger.error(request.url)
+    logger.info(request.url)
     ctl = ctl_analysis.CTL()                                  # Start R, load the package and pointers and create the analysis
     ctlA = ctl.run_analysis(request.form)                     # Start the analysis, a ctlA object should be a separate long running thread
     result = ctl.process_results(ctlA)                        # After the analysis is finished store the result
@@ -313,13 +313,13 @@ def environments():
 
 @app.route("/submit_trait")
 def submit_trait_form():
-    logger.error(request.url)
+    logger.info(request.url)
     species_and_groups = get_species_groups()
     return render_template("submit_trait.html", **{'species_and_groups' : species_and_groups, 'gn_server_url' : GN_SERVER_URL, 'version' : GN_VERSION})
 
 @app.route("/create_temp_trait", methods=('POST',))
 def create_temp_trait():
-    logger.error(request.url)
+    logger.info(request.url)
     print("REQUEST.FORM:", request.form)
     #template_vars = submit_trait.SubmitTrait(request.form)
 
@@ -332,7 +332,7 @@ def export_trait_excel():
     """Excel file consisting of the sample data from the trait data and analysis page"""
     logger.info("In export_trait_excel")
     logger.info("request.form:", request.form)
-    logger.error(request.url)
+    logger.info(request.url)
     sample_data = export_trait_data.export_sample_table(request.form)
 
     logger.info("sample_data - type: %s -- size: %s" % (type(sample_data), len(sample_data)))
@@ -358,7 +358,7 @@ def export_trait_csv():
     """CSV file consisting of the sample data from the trait data and analysis page"""
     logger.info("In export_trait_csv")
     logger.info("request.form:", request.form)
-    logger.error(request.url)
+    logger.info(request.url)
     sample_data = export_trait_data.export_sample_table(request.form)
 
     logger.info("sample_data - type: %s -- size: %s" % (type(sample_data), len(sample_data)))
@@ -379,7 +379,7 @@ def export_traits_csv():
     """CSV file consisting of the traits from the search result page"""
     logger.info("In export_traits_csv")
     logger.info("request.form:", request.form)
-    logger.error(request.url)
+    logger.info(request.url)
     csv_data = export_traits.export_search_results_csv(request.form)
 
     return Response(csv_data,
@@ -389,7 +389,7 @@ def export_traits_csv():
 @app.route('/export_perm_data', methods=('POST',))
 def export_perm_data():
     """CSV file consisting of the permutation data for the mapping results"""
-    logger.error(request.url)
+    logger.info(request.url)
     num_perm = float(request.form['num_perm'])
     perm_data = json.loads(request.form['perm_results'])
 
@@ -412,7 +412,7 @@ def export_perm_data():
 
 @app.route("/show_temp_trait", methods=('POST',))
 def show_temp_trait_page():
-    logger.error(request.url)
+    logger.info(request.url)
     template_vars = show_trait.ShowTrait(request.form)
     #logger.info("js_data before dump:", template_vars.js_data)
     template_vars.js_data = json.dumps(template_vars.js_data,
@@ -427,7 +427,7 @@ def show_temp_trait_page():
 
 @app.route("/show_trait")
 def show_trait_page():
-    logger.error(request.url)
+    logger.info(request.url)
     template_vars = show_trait.ShowTrait(request.args)
     #logger.info("js_data before dump:", template_vars.js_data)
     template_vars.js_data = json.dumps(template_vars.js_data,
@@ -443,7 +443,7 @@ def show_trait_page():
 @app.route("/heatmap", methods=('POST',))
 def heatmap_page():
     logger.info("In heatmap, request.form is:", pf(request.form))
-    logger.error(request.url)
+    logger.info(request.url)
 
     start_vars = request.form
     temp_uuid = uuid.uuid4()
@@ -493,7 +493,7 @@ def mapping_results_container_page():
 
 @app.route("/loading", methods=('POST',))
 def loading_page():
-    logger.error(request.url)
+    logger.info(request.url)
     initial_start_vars = request.form
     logger.debug("Marker regression called with initial_start_vars:", initial_start_vars.items())
     #temp_uuid = initial_start_vars['temp_uuid']
@@ -552,7 +552,7 @@ def loading_page():
 def marker_regression_page():
     initial_start_vars = request.form
     logger.debug("Marker regression called with initial_start_vars:", initial_start_vars.items())
-    logger.error(request.url)
+    logger.info(request.url)
     temp_uuid = initial_start_vars['temp_uuid']
     wanted = (
         'trait_id',
@@ -678,7 +678,7 @@ def marker_regression_page():
 @app.route("/export_mapping_results", methods = ('POST',))
 def export_mapping_results():
     logger.info("request.form:", request.form)
-    logger.error(request.url)
+    logger.info(request.url)
     file_path = request.form.get("results_path")
     results_csv = open(file_path, "r").read()
     response = Response(results_csv,
@@ -691,7 +691,7 @@ def export_mapping_results():
 @app.route("/export", methods = ('POST',))
 def export():
     logger.info("request.form:", request.form)
-    logger.error(request.url)
+    logger.info(request.url)
     svg_xml = request.form.get("data", "Invalid data")
     filename = request.form.get("filename", "manhattan_plot_snp")
     response = Response(svg_xml, mimetype="image/svg+xml")
@@ -702,7 +702,7 @@ def export():
 def export_pdf():
     import cairosvg
     logger.info("request.form:", request.form)
-    logger.error(request.url)
+    logger.info(request.url)
     svg_xml = request.form.get("data", "Invalid data")
     logger.info("svg_xml:", svg_xml)
     filename = request.form.get("filename", "interval_map_pdf")
@@ -715,7 +715,7 @@ def export_pdf():
 @app.route("/network_graph", methods=('POST',))
 def network_graph_page():
     logger.info("In network_graph, request.form is:", pf(request.form))
-    logger.error(request.url)
+    logger.info(request.url)
     start_vars = request.form
     traits = [trait.strip() for trait in start_vars['trait_list'].split(',')]
     if traits[0] != "":
@@ -731,7 +731,7 @@ def network_graph_page():
 @app.route("/corr_compute", methods=('POST',))
 def corr_compute_page():
     logger.info("In corr_compute, request.form is:", pf(request.form))
-    logger.error(request.url)
+    logger.info(request.url)
     #fd = webqtlFormData.webqtlFormData(request.form)
     template_vars = show_corr_results.CorrelationResults(request.form)
     return render_template("correlation_page.html", **template_vars.__dict__)
@@ -739,7 +739,7 @@ def corr_compute_page():
 @app.route("/corr_matrix", methods=('POST',))
 def corr_matrix_page():
     logger.info("In corr_matrix, request.form is:", pf(request.form))
-    logger.error(request.url)
+    logger.info(request.url)
 
     start_vars = request.form
     traits = [trait.strip() for trait in start_vars['trait_list'].split(',')]
@@ -755,7 +755,7 @@ def corr_matrix_page():
 
 @app.route("/corr_scatter_plot")
 def corr_scatter_plot_page():
-    logger.error(request.url)
+    logger.info(request.url)
     template_vars = corr_scatter_plot.CorrScatterPlot(request.args)
     template_vars.js_data = json.dumps(template_vars.js_data,
                                        default=json_default_handler,
@@ -764,7 +764,7 @@ def corr_scatter_plot_page():
 
 @app.route("/submit_bnw", methods=('POST',))
 def submit_bnw():
-    logger.error(request.url)
+    logger.info(request.url)
     template_vars = get_bnw_input(request.form)
     return render_template("empty_collection.html", **{'tool':'Correlation Matrix'})
 
@@ -772,7 +772,7 @@ def submit_bnw():
 def sharing_info_page():
     """Info page displayed when the user clicks the "Info" button next to the dataset selection"""
     logger.info("In sharing_info_page")
-    logger.error(request.url)
+    logger.info(request.url)
     fd = webqtlFormData.webqtlFormData(request.args)
     template_vars = SharingInfoPage.SharingInfoPage(fd)
     return template_vars
@@ -780,7 +780,7 @@ def sharing_info_page():
 # Take this out or secure it before putting into production
 @app.route("/get_temp_data")
 def get_temp_data():
-    logger.error(request.url)
+    logger.info(request.url)
     temp_uuid = request.args['key']
     return flask.jsonify(temp_data.TempData(temp_uuid).get_all())