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authorzsloan2021-01-30 19:20:35 -0600
committerzsloan2021-01-30 19:20:35 -0600
commit0e48ed730817937a7dec6967eb6effdfb1382cf1 (patch)
treedbb4ddcf8bc27921baa013da3fcadd3fc94a5c64 /wqflask
parente565f8718ec1eec1c26570c44c7c988d486b7bc9 (diff)
downloadgenenetwork2-0e48ed730817937a7dec6967eb6effdfb1382cf1.tar.gz
Fixed issue that was causing the Verify button link to not be generated correctly
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/show_trait/show_trait.py3
1 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py
index 9b4a8fa4..24777fda 100644
--- a/wqflask/wqflask/show_trait/show_trait.py
+++ b/wqflask/wqflask/show_trait/show_trait.py
@@ -98,6 +98,7 @@ class ShowTrait(object):
#--------Hongqiang add this part in order to not only blat ProbeSet, but also blat Probe
blatsequence = '%3E' + self.this_trait.name + '%0A' + blatsequence + '%0A'
+
#XZ, 06/03/2009: ProbeSet name is not unique among platforms. We should use ProbeSet Id instead.
query2 = """SELECT Probe.Sequence, Probe.Name
FROM Probe, ProbeSet, ProbeSetFreeze, ProbeSetXRef
@@ -110,7 +111,7 @@ class ShowTrait(object):
seqs = g.db.execute(query2).fetchall()
for seqt in seqs:
if int(seqt[1][-1]) %2 == 1:
- blatsequence += '%3EProbe_' + string.strip(seqt[1]) + '%0A' + string.strip(seqt[0]) + '%0A'
+ blatsequence += '%3EProbe_' + seqt[1].strip() + '%0A' + seqt[0].strip() + '%0A'
if self.dataset.group.species == "rat":
self.UCSC_BLAT_URL = webqtlConfig.UCSC_BLAT % ('rat', 'rn6', blatsequence)