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authorMunyoki Kilyungi2022-10-09 21:26:40 +0300
committerBonfaceKilz2022-11-08 11:22:05 +0300
commit0b6d7199145c9fcaf1200e4b18fe24154da3a555 (patch)
tree4eaf2db98b874af7f933fc6ac6a01b0c30a26774 /wqflask
parente3f94a5f42849dcd1c3ea116037623c7bed826b1 (diff)
downloadgenenetwork2-0b6d7199145c9fcaf1200e4b18fe24154da3a555.tar.gz
Delete unused JavaScript files
* wqflask/wqflask/static/new/javascript/dataset_select_menu.js: Delete. * wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js: Ditto.
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_select_menu.js169
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js253
2 files changed, 0 insertions, 422 deletions
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
deleted file mode 100644
index 9ad38102..00000000
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
+++ /dev/null
@@ -1,169 +0,0 @@
-$(function() {
- var gndata; // loaded once for all to use
- process_json = function(data) {
- populate_species();
- return apply_default();
- };
- $.getJSON(gn_server_url+"int/menu/main.json",
- function(data) {
- gndata = data;
- console.log("***** GOT DATA from GN_SERVER ****");
- console.log(gndata);
- populate_species();
- }).error(function() {
- console.log("ERROR: GN_SERVER not responding");
- alert("ERROR: GN_SERVER internal REST API is not responding");
- });
-
- var populate_species = function() {
- var species_list = Object.keys(gndata.menu).map(function(species) {
- var mitem = gndata.menu[species].menu
- // console.log("Species menu:",species,mitem)
- return [species,mitem];
- });
- redo_dropdown($('#species'), species_list);
- return populate_group();
- };
- window.populate_species = populate_species;
-
- var populate_group = function() {
- var species = $('#species').val();
- var groups = gndata.groups[species].map(function(item) {
- console.log("group:",item);
- return item.slice(1,3);
- })
- redo_dropdown($('#group'), groups);
- return populate_type();
- };
- window.populate_group = populate_group;
-
- var populate_type = function() {
- var species = $('#species').val();
- var group = $('#group').val();
- var type_list = gndata.menu[species].types[group].map(function(item) {
- return [item,item];
- });
-
- redo_dropdown($('#type'), type_list);
- return populate_dataset();
- };
- window.populate_type = populate_type;
-
- var populate_dataset = function() {
- var species = $('#species').val();
- var group = $('#group').val();
- var type = $('#type').val();
- var dataset_list = gndata.datasets[species][group][type].map(function(item) {
- return item.slice(1,3);
- })
-
- return redo_dropdown($('#dataset'), dataset_list);
- };
- window.populate_dataset = populate_dataset;
-
- var redo_dropdown = function(dropdown, items) {
- var item, _i, _len, _results;
- console.log("in redo:", dropdown, items);
- dropdown.empty();
- _results = [];
- for (_i = 0, _len = items.length; _i < _len; _i++) {
- item = items[_i];
- if (item.length > 2){
- _results.push(dropdown.append($("<option data-id=\""+item[0]+"\" />").val(item[1]).text(item[2])));
- } else {
- _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
- }
- }
- return _results;
- };
- $('#species').change((function(_this) {
- return function() {
- return populate_group();
- };
- })(this));
- $('#group').change((function(_this) {
- return function() {
- return populate_type();
- };
- })(this));
- $('#type').change((function(_this) {
- return function() {
- return populate_dataset();
- };
- })(this));
- open_window = function(url, name) {
- var options;
- options = "menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900";
- return open(url, name, options).focus();
- };
- var group_info = function() {
- var group, species, url;
- species = $('#species').val();
- group = $('#group').val();
- url = "/" + species + "Cross.html#" + group;
- return open_window(url, "Group Info");
- };
- $('#group_info').click(group_info);
- var dataset_info = function() {
- var dataset, url;
- accession_id = $('#dataset option:selected').data("id");
- url = "http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=" + accession_id;
- return open_window(url, "Dataset Info");
- };
- $('#dataset_info').click(dataset_info);
- var make_default = function() {
- var holder, item, jholder, _i, _len, _ref;
- alert("The current settings are now your default.")
- holder = {};
- _ref = ['species', 'group', 'type', 'dataset'];
- for (_i = 0, _len = _ref.length; _i < _len; _i++) {
- item = _ref[_i];
- holder[item] = $("#" + item).val();
- }
- jholder = JSON.stringify(holder);
- return $.cookie('search_defaults', jholder, {
- expires: 365
- });
- };
- var apply_default = function() {
- var defaults, item, populate_function, _i, _len, _ref, _results;
- defaults = $.cookie('search_defaults');
- if (defaults) {
- defaults = $.parseJSON(defaults);
- } else {
- defaults = {
- species: "mouse",
- group: "BXD",
- type: "Hippocampus mRNA",
- dataset: "HC_M2_0606_P"
- };
- }
- _ref = [['species', 'group'], ['group', 'type'], ['type', 'dataset'], ['dataset', null]];
- _results = [];
- for (_i = 0, _len = _ref.length; _i < _len; _i++) {
- item = _ref[_i];
- $("#" + item[0]).val(defaults[item[0]]);
- if (item[1]) {
- populate_function = "populate_" + item[1];
- console.log("Calling:", populate_function);
- _results.push(window[populate_function]());
- } else {
- _results.push(void 0);
- }
- }
- return _results;
- };
- var check_search_term = function() {
- var or_search_term, and_search_term;
- or_search_term = $('#or_search').val();
- and_search_term = $('#and_search').val();
- console.log("or_search_term:", or_search_term);
- console.log("and_search_term:", and_search_term);
- if (or_search_term === "" && and_search_term === "") {
- alert("Please enter one or more search terms or search equations.");
- return false;
- }
- };
- $("#make_default").click(make_default);
- return $("#btsearch").click(check_search_term);
-});
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js
deleted file mode 100644
index 1d4a94d9..00000000
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js
+++ /dev/null
@@ -1,253 +0,0 @@
-var apply_default, check_search_term, dataset_info, group_info, make_default, open_window, populate_dataset, populate_group, populate_species, populate_type, process_json, redo_dropdown;
-process_json = function(data) {
- window.jdata = data;
- populate_species();
- if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
- return apply_default();
- }
-};
-
-$.ajax('/api/v_pre1/gen_dropdown', {
- dataType: 'json',
- success: process_json
-});
-
-populate_species = function() {
- var species_list;
- species_list = this.jdata.species;
- redo_dropdown($('#species'), species_list);
- return populate_group();
-};
-window.populate_species = populate_species;
-populate_group = function() {
- var group_list, species;
- console.log("in populate group");
- species = $('#species').val();
- group_list = this.jdata.groups[species];
- for (_i = 0, _len = group_list.length; _i < (_len - 1); _i++) {
- if (group_list[_i][0] == "BXD300"){
- group_list.splice(_i, 1)
- }
- }
- redo_dropdown($('#group'), group_list);
- if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
- return populate_type();
- }
-};
-window.populate_group = populate_group;
-populate_type = function() {
- var group, species, type_list;
- console.log("in populate type");
- species = $('#species').val();
- group = $('#group').val();
- type_list = this.jdata.types[species][group];
- redo_dropdown($('#type'), type_list);
- return populate_dataset();
-};
-window.populate_type = populate_type;
-populate_dataset = function() {
- var dataset_list, group, species, type;
- console.log("in populate dataset");
- species = $('#species').val();
- group = $('#group').val();
- type = $('#type').val();
- console.log("sgt:", species, group, type);
- dataset_list = this.jdata.datasets[species][group][type];
- console.log("pop_dataset:", dataset_list);
- return redo_dropdown($('#dataset'), dataset_list);
-};
-window.populate_dataset = populate_dataset;
-redo_dropdown = function(dropdown, items) {
- var item, _i, _len, _results;
- console.log("in redo:", dropdown, items);
- dropdown.empty();
- _results = [];
-
- if (dropdown.attr('id') == "group"){
- group_family_list = [];
- for (_i = 0, _len = items.length; _i < _len; _i++) {
- item = items[_i];
- group_family = item[2].toString().split(":")[1]
- group_family_list.push([item[0], item[1], group_family])
- }
-
- current_family = ""
- this_opt_group = null
- for (_i = 0, _len = group_family_list.length; _i < _len; _i++) {
- item = group_family_list[_i];
- if (item[2] != "None" && current_family == ""){
- current_family = item[2]
- this_opt_group = $("<optgroup label=\"" + item[2] + "\">")
- this_opt_group.append($("<option />").val(item[0]).text(item[1]));
- } else if (current_family != "" && item[2] == current_family){
- this_opt_group.append($("<option />").val(item[0]).text(item[1]));
- if (_i == group_family_list.length - 1){
- _results.push(dropdown.append(this_opt_group))
- }
- } else if (current_family != "" && item[2] != current_family && item[2] != "None"){
- current_family = item[2]
- _results.push(dropdown.append(this_opt_group))
- this_opt_group = $("<optgroup label=\"" + current_family + "\">")
- this_opt_group.append($("<option />").val(item[0]).text(item[1]));
- if (_i == group_family_list.length - 1){
- _results.push(dropdown.append(this_opt_group))
- }
- } else if (current_family != "" && this_opt_group != null && item[2] == "None"){
- _results.push(dropdown.append(this_opt_group))
- current_family = ""
- _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
- } else {
- _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
- }
- }
- } else if (dropdown.attr('id') == "type"){
- type_family_list = [];
- for (_i = 0, _len = items.length; _i < _len; _i++) {
- item = items[_i];
- type_family_list.push([item[0], item[1], item[2]])
- }
-
- current_family = ""
- this_opt_group = null
- for (_i = 0, _len = type_family_list.length; _i < _len; _i++) {
- item = type_family_list[_i];
- if (item[2] != "None" && current_family == ""){
- current_family = item[2]
- this_opt_group = $("<optgroup label=\"" + item[2] + "\">")
- this_opt_group.append($("<option />").val(item[0]).text(item[1]));
- if (_i == type_family_list.length - 1){
- _results.push(dropdown.append(this_opt_group))
- }
- } else if (current_family != "" && item[2] == current_family){
- this_opt_group.append($("<option />").val(item[0]).text(item[1]));
- if (_i == type_family_list.length - 1){
- _results.push(dropdown.append(this_opt_group))
- }
- } else if (current_family != "" && item[2] != current_family && item[2] != "None"){
- current_family = item[2]
- _results.push(dropdown.append(this_opt_group))
- this_opt_group = $("<optgroup label=\"" + current_family + "\">")
- this_opt_group.append($("<option />").val(item[0]).text(item[1]));
- if (_i == type_family_list.length - 1){
- _results.push(dropdown.append(this_opt_group))
- }
- } else {
- _results.push(dropdown.append(this_opt_group))
- current_family = ""
- _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
- }
- }
- } else {
- for (_i = 0, _len = items.length; _i < _len; _i++) {
- item = items[_i];
- if (item.length > 2){
- _results.push(dropdown.append($("<option data-id=\""+item[0]+"\" />").val(item[1]).text(item[2])));
- } else {
- _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
- }
- }
- }
-
- return _results;
-};
-$('#species').change((function(_this) {
- return function() {
- return populate_group();
- };
-})(this));
-$('#group').change((function(_this) {
- return function() {
- if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
- return populate_type();
- }
- else {
- return false
- }
- };
-})(this));
-$('#type').change((function(_this) {
- return function() {
- return populate_dataset();
- };
-})(this));
-open_window = function(url, name) {
- var options;
- options = "menubar=yes,toolbar=yes,titlebar=yes,location=yes,resizable=yes,status=yes,scrollbars=yes,directories=yes,width=900";
- return open(url, name, options).focus();
-};
-group_info = function() {
- var group, species, url;
- species = $('#species').val();
- group = $('#group').val();
- url = "http://gn1.genenetwork.org/" + species + "Cross.html#" + group;
- return open_window(url, "Group Info");
-};
-$('#group_info').click(group_info);
-dataset_info = function() {
- var dataset, url;
- accession_id = $('#dataset option:selected').data("id");
- name = $('#dataset option:selected').val();
- if (accession_id != "None") {
- url = "http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=" + accession_id + "&InfoPageName=" + name;
- } else {
- url = "http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName=" + name;
- }
- return open_window(url, "Dataset Info");
-};
-$('#dataset_info').click(dataset_info);
-make_default = function() {
- var holder, item, jholder, _i, _len, _ref;
- alert("The current settings are now your default.")
- holder = {};
- _ref = ['species', 'group', 'type', 'dataset'];
- for (_i = 0, _len = _ref.length; _i < _len; _i++) {
- item = _ref[_i];
- holder[item] = $("#" + item).val();
- }
- jholder = JSON.stringify(holder);
- return $.cookie('search_defaults', jholder, {
- expires: 365
- });
-};
-apply_default = function() {
- var defaults, item, populate_function, _i, _len, _ref, _results;
- defaults = $.cookie('search_defaults');
- if (defaults) {
- defaults = $.parseJSON(defaults);
- } else {
- defaults = {
- species: "mouse",
- group: "BXD",
- type: "Hippocampus mRNA",
- dataset: "HC_M2_0606_P"
- };
- }
-
- _ref = [['species', 'group'], ['group', 'type'], ['type', 'dataset'], ['dataset', null]];
- _results = [];
- for (_i = 0, _len = _ref.length; _i < _len; _i++) {
- item = _ref[_i];
- $("#" + item[0]).val(defaults[item[0]]);
- if (item[1]) {
- populate_function = "populate_" + item[1];
- console.log("Calling:", populate_function);
- _results.push(window[populate_function]());
- } else {
- _results.push(void 0);
- }
- }
- return _results;
-};
-check_search_term = function() {
- var or_search_term, and_search_term;
- or_search_term = $('#or_search').val();
- and_search_term = $('#and_search').val();
- console.log("or_search_term:", or_search_term);
- console.log("and_search_term:", and_search_term);
- if (or_search_term === "" && and_search_term === "") {
- alert("Please enter one or more search terms or search equations.");
- return false;
- }
-};
-$("#make_default").click(make_default);
-$("#btsearch").click(check_search_term);