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| author | zsloan | 2021-11-17 18:31:59 +0000 |
|---|---|---|
| committer | zsloan | 2021-11-17 18:31:59 +0000 |
| commit | 747544906c4d331a8d46ed692070e0f9d335191b (patch) | |
| tree | a1157cc6074a02bd7bf58780fd228819c9f20aff /wqflask | |
| parent | 83719648e505747f16281d7e8e14f1003297be5c (diff) | |
| download | genenetwork2-747544906c4d331a8d46ed692070e0f9d335191b.tar.gz | |
Fixes gene global search error caused by some genes not having a symbol (not sure why this is in the DB; seems to have only happened recently)
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/gsearch.py | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/wqflask/wqflask/gsearch.py b/wqflask/wqflask/gsearch.py index 2516e4fb..bf44408e 100644 --- a/wqflask/wqflask/gsearch.py +++ b/wqflask/wqflask/gsearch.py @@ -82,12 +82,13 @@ class GSearch: this_trait['species'] = line[0] this_trait['group'] = line[1] this_trait['tissue'] = line[2] - this_trait['symbol'] = line[6] + this_trait['symbol'] = "N/A" + if line[6]: + this_trait['symbol'] = line[6] + this_trait['description'] = "N/A" if line[7]: this_trait['description'] = line[7].decode( 'utf-8', 'replace') - else: - this_trait['description'] = "N/A" this_trait['location_repr'] = 'N/A' if (line[8] != "NULL" and line[8] != "") and (line[9] != 0): this_trait['location_repr'] = 'Chr%s: %.6f' % ( |