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authorPjotr Prins2020-04-27 17:14:37 -0500
committerPjotr Prins2020-04-27 17:14:37 -0500
commit13942f9229ff623ddde98ae9d328fc8492f210fa (patch)
tree70034917d552d4f8994d32f308522824f36d2ae6 /wqflask
parente05b70e1a9aaea5e71d4f616ad86e5625a0cdb4c (diff)
parentcaa9966df61a9e4290d36af557adc3ede1a3674b (diff)
downloadgenenetwork2-13942f9229ff623ddde98ae9d328fc8492f210fa.tar.gz
Mergedgn-master
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/base/data_set.py52
-rw-r--r--wqflask/runserver.py1
-rw-r--r--wqflask/utility/tools.py1
-rw-r--r--wqflask/wqflask/__init__.py4
-rw-r--r--wqflask/wqflask/api/gen_menu.py23
-rw-r--r--wqflask/wqflask/collect.py2
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_menu_structure.json2320
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js1
-rwxr-xr-x[-rw-r--r--]wqflask/wqflask/templates/show_trait_mapping_tools.html0
9 files changed, 2096 insertions, 308 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 8652e6b7..cab708ef 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -64,7 +64,7 @@ logger = getLogger(__name__ )
# Each subclass will add to this
DS_NAME_MAP = {}
-def create_dataset(dataset_name, rebuild=True, dataset_type = None, get_samplelist = True, group_name = None):
+def create_dataset(dataset_name, dataset_type = None, get_samplelist = True, group_name = None):
if not dataset_type:
dataset_type = Dataset_Getter(dataset_name)
@@ -77,7 +77,7 @@ def create_dataset(dataset_name, rebuild=True, dataset_type = None, get_sampleli
class Dataset_Types(object):
- def __init__(self, rebuild=False):
+ def __init__(self):
"""Create a dictionary of samples where the value is set to Geno,
Publish or ProbeSet. E.g.
@@ -93,26 +93,29 @@ Publish or ProbeSet. E.g.
"""
self.datasets = {}
- if rebuild: #ZS: May make this the only option
- data = json.loads(requests.get(GN2_BASE_URL + "/api/v_pre1/gen_dropdown").content)
- #data = gen_menu.gen_dropdown_json()
- else:
- file_name = "wqflask/static/new/javascript/dataset_menu_structure.json"
- with open(file_name, 'r') as fh:
- data = json.load(fh)
-
- for species in data['datasets']:
- for group in data['datasets'][species]:
- for dataset_type in data['datasets'][species][group]:
- for dataset in data['datasets'][species][group][dataset_type]:
- short_dataset_name = dataset[1]
- if dataset_type == "Phenotypes":
- new_type = "Publish"
- elif dataset_type == "Genotypes":
- new_type = "Geno"
- else:
- new_type = "ProbeSet"
- self.datasets[short_dataset_name] = new_type
+
+ data = Redis.get("dataset_structure")
+ if data:
+ self.datasets = json.loads(data)
+ else: #ZS: I don't think this should ever run unless Redis is emptied
+ try:
+ data = json.loads(requests.get(GN2_BASE_URL + "/api/v_pre1/gen_dropdown", timeout = 5).content)
+ for species in data['datasets']:
+ for group in data['datasets'][species]:
+ for dataset_type in data['datasets'][species][group]:
+ for dataset in data['datasets'][species][group][dataset_type]:
+ short_dataset_name = dataset[1]
+ if dataset_type == "Phenotypes":
+ new_type = "Publish"
+ elif dataset_type == "Genotypes":
+ new_type = "Geno"
+ else:
+ new_type = "ProbeSet"
+ self.datasets[short_dataset_name] = new_type
+ except:
+ pass
+
+ Redis.set("dataset_structure", json.dumps(self.datasets))
# Set LOG_LEVEL_DEBUG=5 to see the following:
logger.debugf(5, "datasets",self.datasets)
@@ -131,6 +134,7 @@ Publish or ProbeSet. E.g.
results = g.db.execute(geno_query).fetchall()
if len(results):
self.datasets[name] = "ProbeSet"
+ Redis.set("dataset_structure", json.dumps(self.datasets))
return self.datasets[name]
group_name = name.replace("Publish", "")
@@ -144,6 +148,7 @@ Publish or ProbeSet. E.g.
results = g.db.execute(pheno_query).fetchall()
if len(results):
self.datasets[name] = "Publish"
+ Redis.set("dataset_structure", json.dumps(self.datasets))
return self.datasets[name]
#ZS: For when there isn't an InfoFiles ID; not sure if this and the preceding query are both necessary
@@ -155,6 +160,7 @@ Publish or ProbeSet. E.g.
results = g.db.execute(other_pheno_query).fetchall()
if len(results):
self.datasets[name] = "Publish"
+ Redis.set("dataset_structure", json.dumps(self.datasets))
return self.datasets[name]
geno_query = """
@@ -170,11 +176,11 @@ Publish or ProbeSet. E.g.
results = g.db.execute(geno_query).fetchall()
if len(results):
self.datasets[name] = "Geno"
+ Redis.set("dataset_structure", json.dumps(self.datasets))
return self.datasets[name]
#ZS: It shouldn't ever reach this
return None
-
else:
return self.datasets[name]
diff --git a/wqflask/runserver.py b/wqflask/runserver.py
index 7c06356b..15572d97 100644
--- a/wqflask/runserver.py
+++ b/wqflask/runserver.py
@@ -9,6 +9,7 @@
from wqflask import app
+
import logging
import utility.logger
logger = utility.logger.getLogger(__name__ )
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index 9354ece6..2914d354 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -233,6 +233,7 @@ def show_settings():
# Cached values
GN_VERSION = get_setting('GN_VERSION')
HOME = get_setting('HOME')
+SERVER_PORT = get_setting('SERVER_PORT')
WEBSERVER_MODE = get_setting('WEBSERVER_MODE')
GN2_BASE_URL = get_setting('GN2_BASE_URL')
GN2_BRANCH_URL = get_setting('GN2_BRANCH_URL')
diff --git a/wqflask/wqflask/__init__.py b/wqflask/wqflask/__init__.py
index 399e794d..62e98b36 100644
--- a/wqflask/wqflask/__init__.py
+++ b/wqflask/wqflask/__init__.py
@@ -21,5 +21,5 @@ app.jinja_env.globals.update(
numify = formatting.numify
)
-import wqflask.views
-from wqflask.api import router \ No newline at end of file
+from wqflask.api import router
+import wqflask.views \ No newline at end of file
diff --git a/wqflask/wqflask/api/gen_menu.py b/wqflask/wqflask/api/gen_menu.py
index 64a413c2..c7bcb65d 100644
--- a/wqflask/wqflask/api/gen_menu.py
+++ b/wqflask/wqflask/api/gen_menu.py
@@ -1,7 +1,6 @@
from __future__ import print_function, division
import sys
-import json
from flask import g
@@ -23,24 +22,11 @@ def gen_dropdown_json():
types = get_types(groups)
datasets = get_datasets(types)
- #species.append(('All Species', 'All Species'))
- #groups['All Species'] = [('All Groups', 'All Groups')]
- #types['All Species'] = {}
- #types['All Species']['All Groups'] = [('Phenotypes', 'Phenotypes')]
- #datasets['All Species'] = {}
- #datasets['All Species']['All Groups'] = {}
- #datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')]
-
data = dict(species=species,
groups=groups,
types=types,
datasets=datasets)
- output_file = """./wqflask/static/new/javascript/dataset_menu_structure.json"""
-
- with open(output_file, 'w') as fh:
- json.dump(data, fh, indent=3, sort_keys=True)
-
return data
def get_species():
@@ -60,15 +46,6 @@ def get_groups(species):
groups = {}
for species_name, _species_full_name in species:
groups[species_name] = []
- # results = g.db.execute("""SELECT InbredSet.Name, InbredSet.FullName
- # FROM InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze
- # WHERE Species.Name = '{}' AND
- # InbredSet.SpeciesId = Species.Id AND
- # (PublishFreeze.InbredSetId = InbredSet.Id OR
- # GenoFreeze.InbredSetId = InbredSet.Id OR
- # ProbeFreeze.InbredSetId = InbredSet.Id)
- # GROUP by InbredSet.Name
- # ORDER BY InbredSet.FullName""".format(species_name)).fetchall()
results = g.db.execute("""SELECT InbredSet.Name, InbredSet.FullName, IFNULL(InbredSet.Family, 'None')
FROM InbredSet, Species
diff --git a/wqflask/wqflask/collect.py b/wqflask/wqflask/collect.py
index 1d74b699..b22e0004 100644
--- a/wqflask/wqflask/collect.py
+++ b/wqflask/wqflask/collect.py
@@ -185,7 +185,7 @@ def delete_collection():
if len(uc_id.split(":")) > 1:
flash("We've deleted the selected collections.", "alert-info")
else:
- flash("We've deleted the collection: {}.".format(uc_id), "alert-info")
+ flash("We've deleted the selected collection.", "alert-info")
else:
flash("We've deleted the collection: {}.".format(collection_name), "alert-info")
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
index f9bce083..679e38b0 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
+++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
@@ -277,6 +277,18 @@
]
},
"CANDLE": {
+ "Methylation": [
+ [
+ "423",
+ "CANDLE_Meth27_0313",
+ "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13)*"
+ ],
+ [
+ "422",
+ "CANDLE_Meth_0313",
+ "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13) Z-Score*"
+ ]
+ ],
"Newborn Cord Blood mRNA": [
[
"324",
@@ -307,7 +319,7 @@
]
},
"GTEx": {
- "Adipose tissue, subcutaneous mRNA": [
+ "Adipose Tissue, Subcutaneous mRNA": [
[
"580",
"GTEx_log2_Subcu_0314",
@@ -319,7 +331,7 @@
"GTEx Human Subcutaneous (Apr14) RPKM"
]
],
- "Adipose tissue, visceral mRNA": [
+ "Adipose Tissue, Visceral mRNA": [
[
"587",
"GTEx_log2_Visce_0314",
@@ -873,14 +885,14 @@
]
},
"GTEx_v5": {
- "Adipose tissue, subcutaneous mRNA": [
+ "Adipose Tissue, Subcutaneous mRNA": [
[
"718",
"GTEXv5_AdipSub_0915",
"GTEXv5 Human Adipose Subcutaneous RefSeq (Sep15) RPKM log2"
]
],
- "Adipose tissue, visceral mRNA": [
+ "Adipose Tissue, Visceral mRNA": [
[
"719",
"GTEXv5_AdiVis_0915",
@@ -1252,6 +1264,603 @@
]
]
},
+ "GTEx_v8": {
+ "Adipose Tissue, Subcutaneous mRNA": [
+ [
+ "950",
+ "GTEXv8_AdipSub_tpm_0220",
+ "GTEXv8 Human Adipose Subcutaneous RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "901",
+ "GTEXv8_AdipSub_0220",
+ "GTEXv8 Human Adipose Subcutaneous RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Adipose Tissue, Visceral mRNA": [
+ [
+ "951",
+ "GTEXv8_AdiVis_tpm_0220",
+ "GTEXv8 Human Adipose Visceral Omentum RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "902",
+ "GTEXv8_AdiVis_0220",
+ "GTEXv8 Human Adipose Visceral Omentum RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Adrenal Gland mRNA": [
+ [
+ "952",
+ "GTEXv8_AdrGla_tpm_0220",
+ "GTEXv8 Human Adrenal Gland RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "903",
+ "GTEXv8_AdrGla_0220",
+ "GTEXv8 Human Adrenal Gland RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Amygdala mRNA": [
+ [
+ "956",
+ "GTEXv8_Amy_tpm_0220",
+ "GTEXv8 Human Brain Amygdala RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "907",
+ "GTEXv8_Amy_0220",
+ "GTEXv8 Human Brain Amygdala RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Anterior Cingulate Cortex mRNA": [
+ [
+ "957",
+ "GTEXv8_AntCtx_tpm_0220",
+ "GTEXv8 Human Brain Anterior cingulate cortex BA24 RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "908",
+ "GTEXv8_AntCtx_0220",
+ "GTEXv8 Human Brain Anterior cingulate cortex BA24 RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Aorta mRNA": [
+ [
+ "953",
+ "GTEXv8_ArtAor_tpm_0220",
+ "GTEXv8 Human Artery Aorta RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "904",
+ "GTEXv8_ArtAor_0220",
+ "GTEXv8 Human Artery Aorta RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Breast - Mammary Tissue mRNA": [
+ [
+ "969",
+ "GTEXv8_BrMa_tpm_0220",
+ "GTEXv8 Human Breast Mammary Tissue RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "920",
+ "GTEXv8_BrMa_0220",
+ "GTEXv8 Human Breast Mammary Tissue RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Caudate mRNA": [
+ [
+ "958",
+ "GTEXv8_BrCa_tpm_0220",
+ "GTEXv8 Human Brain Caudate basal ganglia RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "909",
+ "GTEXv8_BrCa_0220",
+ "GTEXv8 Human Brain Caudate basal ganglia RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Cells - EBV-Transformed Lymphocytes mRNA": [
+ [
+ "970",
+ "GTEXv8_EBV_tpm_0220",
+ "GTEXv8 Human Cells-EBV-transformed lymphocytes RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "921",
+ "GTEXv8_EBV_0220",
+ "GTEXv8 Human Cells-EBV-transformed lymphocytes RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Cells - Transformed Fibroblasts mRNA": [
+ [
+ "971",
+ "GTEXv8_CTF_tpm_0220",
+ "GTEXv8 Human Cells-Transformed fibroblasts RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "922",
+ "GTEXv8_CTF_0220",
+ "GTEXv8 Human Cells-Transformed fibroblasts RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Cerebellar Cortex mRNA": [
+ [
+ "961",
+ "GTEXv8_BrCtx_tpm_0220",
+ "GTEXv8 Human Brain Cortex RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "912",
+ "GTEXv8_BrCtx_0220",
+ "GTEXv8 Human Brain Cortex RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Cerebellar Hemisphere mRNA": [
+ [
+ "959",
+ "GTEXv8_CerH_tpm_0220",
+ "GTEXv8 Human Brain Cerebellar Hemisphere RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "910",
+ "GTEXv8_CerH_0220",
+ "GTEXv8 Human Brain Cerebellar Hemisphere RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Cerebellum mRNA": [
+ [
+ "960",
+ "GTEXv8_BrCe_tpm_0220",
+ "GTEXv8 Human Brain Cerebellum RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "911",
+ "GTEXv8_BrCe_0220",
+ "GTEXv8 Human Brain Cerebellum RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Colon - Sigmoid mRNA": [
+ [
+ "972",
+ "GTEXv8_ColSig_tpm_0220",
+ "GTEXv8 Human Colon-Sigmoid RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "923",
+ "GTEXv8_ColSig_0220",
+ "GTEXv8 Human Colon-Sigmoid RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Colon - Transverse mRNA": [
+ [
+ "973",
+ "GTEXv8_ColTra_tpm_0220",
+ "GTEXv8 Human Colon-Transverse RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "924",
+ "GTEXv8_ColTra_0220",
+ "GTEXv8 Human Colon-Transverse RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Coronary mRNA": [
+ [
+ "954",
+ "GTEXv8_ArtCor_tpm_0220",
+ "GTEXv8 Human Artery Coronary RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "905",
+ "GTEXv8_ArtCor_0220",
+ "GTEXv8 Human Artery Coronary RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Esophagus - Gastroesophageal mRNA": [
+ [
+ "974",
+ "GTEXv8_GastJun_tpm_0220",
+ "GTEXv8 Human Esophagus - Gastroesophageal Junction RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "925",
+ "GTEXv8_GastJun_0220",
+ "GTEXv8 Human Esophagus - Gastroesophageal Junction RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Esophagus - Mucosa mRNA": [
+ [
+ "975",
+ "GTEXv8_EsoMu_tpm_0220",
+ "GTEXv8 Human Esophagus-Mucosa RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "926",
+ "GTEXv8_EsoMu_0220",
+ "GTEXv8 Human Esophagus-Mucosa RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Esophagus - Muscularis mRNA": [
+ [
+ "976",
+ "GTEXv8_EsoMus_tpm_0220",
+ "GTEXv8 Human Esophagus-Muscularis RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "927",
+ "GTEXv8_EsoMus_0220",
+ "GTEXv8 Human Esophagus-Muscularis RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Frontal Cortex mRNA": [
+ [
+ "962",
+ "GTEXv8_BrFr_tpm_0220",
+ "GTEXv8 Human Brain Frontal Cortex BA9 RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "913",
+ "GTEXv8_BrFr_0220",
+ "GTEXv8 Human Brain Frontal Cortex BA9 RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Heart - Atrial Appendage mRNA": [
+ [
+ "977",
+ "GTEXv8_HAA_tpm_0220",
+ "GTEXv8 Human Heart-Atrial Appendage RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "928",
+ "GTEXv8_HAA_0220",
+ "GTEXv8 Human Heart-Atrial Appendage RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Heart - Left Ventricle mRNA": [
+ [
+ "978",
+ "GTEXv8_LV_tpm_0220",
+ "GTEXv8 Human Heart-Left Ventricle RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "929",
+ "GTEXv8_LV_0220",
+ "GTEXv8 Human Heart-Left Ventricle RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Hippocampus mRNA": [
+ [
+ "963",
+ "GTEXv8_Hip_tpm_0220",
+ "GTEXv8 Human Brain Hippocampus RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "914",
+ "GTEXv8_Hip_0220",
+ "GTEXv8 Human Brain Hippocampus RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Hypothalamus mRNA": [
+ [
+ "964",
+ "GTEXv8_Hiptha_tpm_0220",
+ "GTEXv8 Human Brain Hypothalamus RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "915",
+ "GTEXv8_Hiptha_0220",
+ "GTEXv8 Human Brain Hypothalamus RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Kidney mRNA": [
+ [
+ "979",
+ "GTEXv8_Kidn_tpm_0220",
+ "GTEXv8 Human Kidney-Cortex RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "930",
+ "GTEXv8_Kidn_0220",
+ "GTEXv8 Human Kidney-Cortex RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Liver mRNA": [
+ [
+ "980",
+ "GTEXv8_Liv_tpm_0220",
+ "GTEXv8 Human Liver RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "931",
+ "GTEXv8_Liv_0220",
+ "GTEXv8 Human Liver RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Lung mRNA": [
+ [
+ "981",
+ "GTEXv8_Lung_tpm_0220",
+ "GTEXv8 Human Lung RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "932",
+ "GTEXv8_Lung_0220",
+ "GTEXv8 Human Lung RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Muscle mRNA": [
+ [
+ "982",
+ "GTEXv8_MuSk_tpm_0220",
+ "GTEXv8 Human Muscle-Skeletal RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "933",
+ "GTEXv8_MuSk_0220",
+ "GTEXv8 Human Muscle-Skeletal RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Nerve - Tibial mRNA": [
+ [
+ "983",
+ "GTEXv8_Tib_tpm_0220",
+ "GTEXv8 Human Nerve-Tibial RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "934",
+ "GTEXv8_Tib_0220",
+ "GTEXv8 Human Nerve-Tibial RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Nucleus Accumbens mRNA": [
+ [
+ "965",
+ "GTEXv8_NuAcc_tpm_0220",
+ "GTEXv8 Human Brain Nucleus accumbens basal ganglia RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "916",
+ "GTEXv8_NuAcc_0220",
+ "GTEXv8 Human Brain Nucleus accumbens basal ganglia RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Ovary mRNA": [
+ [
+ "984",
+ "GTEXv8_Ov_tpm_0220",
+ "GTEXv8 Human Ovary RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "935",
+ "GTEXv8_Ov_0220",
+ "GTEXv8 Human Ovary RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Pancreas mRNA": [
+ [
+ "985",
+ "GTEXv8_Panc_tpm_0220",
+ "GTEXv8 Human Pancreas RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "936",
+ "GTEXv8_Panc_0220",
+ "GTEXv8 Human Pancreas RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "None",
+ "GTEx_v8Publish",
+ "GTEx_v8 Phenotypes"
+ ]
+ ],
+ "Pituitary Gland mRNA": [
+ [
+ "986",
+ "GTEXv8_Pit_tpm_0220",
+ "GTEXv8 Human Pituitary RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "937",
+ "GTEXv8_Pit_0220",
+ "GTEXv8 Human Pituitary RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Prostate mRNA": [
+ [
+ "987",
+ "GTEXv8_Prost_tpm_0220",
+ "GTEXv8 Human Prostate RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "938",
+ "GTEXv8_Prost_0220",
+ "GTEXv8 Human Prostate RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Putamen mRNA": [
+ [
+ "966",
+ "GTEXv8_PutB_tpm_0220",
+ "GTEXv8 Human Brain Putamen basal ganglia RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "917",
+ "GTEXv8_PutB_0220",
+ "GTEXv8 Human Brain Putamen basal ganglia RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Salivary Gland mRNA": [
+ [
+ "988",
+ "GTEXv8_SalGl_tpm_0220",
+ "GTEXv8 Human Salivary Gland Minor RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "939",
+ "GTEXv8_SalGl_0220",
+ "GTEXv8 Human Salivary Gland Minor RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Skin - Not Sun Exposed (Suprapubic) mRNA": [
+ [
+ "989",
+ "GTEXv8_SkN_tpm_0220",
+ "GTEXv8 Human Skin-Not Sun Exposed-Suprapubic RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "940",
+ "GTEXv8_SkN_0220",
+ "GTEXv8 Human Skin-Not Sun Exposed-Suprapubic RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Skin - Sun Exposed (Lower leg) mRNA": [
+ [
+ "990",
+ "GTEXv8_SkS_tpm_0220",
+ "GTEXv8 Human Skin-Sun Exposed-Lower leg RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "941",
+ "GTEXv8_SkS_0220",
+ "GTEXv8 Human Skin-Sun Exposed-Lower leg RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Small Intestine - Terminal Ileum mRNA": [
+ [
+ "997",
+ "GTEXv8_SInt_tpm_0220",
+ "GTEXv8 Human Small Intestine - Terminal Ileum RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "948",
+ "GTEXv8_SInt_0220",
+ "GTEXv8 Human Small Intestine - Terminal Ileum RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Spinal Cord mRNA": [
+ [
+ "967",
+ "GTEXv8_SpCo_tpm_0220",
+ "GTEXv8 Human Brain Spinal cord cervical c-1 RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "918",
+ "GTEXv8_SpCo_0220",
+ "GTEXv8 Human Brain Spinal cord cervical c-1 RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Spleen mRNA": [
+ [
+ "991",
+ "GTEXv8_Sple_tpm_0220",
+ "GTEXv8 Human Spleen RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "942",
+ "GTEXv8_Sple_0220",
+ "GTEXv8 Human Spleen RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Stomach mRNA": [
+ [
+ "992",
+ "GTEXv8_Sto_tpm_0220",
+ "GTEXv8 Human Stomach RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "943",
+ "GTEXv8_Sto_0220",
+ "GTEXv8 Human Stomach RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Substantia Nigra mRNA": [
+ [
+ "968",
+ "GTEXv8_SubN_tpm_0220",
+ "GTEXv8 Human Brain Substantia nigra RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "919",
+ "GTEXv8_SubN_0220",
+ "GTEXv8 Human Brain Substantia nigra RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Testis mRNA": [
+ [
+ "993",
+ "GTEXv8_Test_tpm_0220",
+ "GTEXv8 Human Testis RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "944",
+ "GTEXv8_Test_0220",
+ "GTEXv8 Human Testis RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Thyroid mRNA": [
+ [
+ "994",
+ "GTEXv8_Thy_tpm_0220",
+ "GTEXv8 Human Thyroid RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "945",
+ "GTEXv8_Thy_0220",
+ "GTEXv8 Human Thyroid RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Tibial mRNA": [
+ [
+ "955",
+ "GTEXv8_ArtTib_tpm_0220",
+ "GTEXv8 Human Artery Tibial RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "906",
+ "GTEXv8_ArtTib_0220",
+ "GTEXv8 Human Artery Tibial RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Uterus mRNA": [
+ [
+ "995",
+ "GTEXv8_Ut_tpm_0220",
+ "GTEXv8 Human Uterus RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "946",
+ "GTEXv8_Ut_0220",
+ "GTEXv8 Human Uterus RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Vagina mRNA": [
+ [
+ "996",
+ "GTEXv8_Vag_tpm_0220",
+ "GTEXv8 Human Vagina RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "947",
+ "GTEXv8_Vag_0220",
+ "GTEXv8 Human Vagina RNA-Seq (Feb20) log2"
+ ]
+ ],
+ "Whole Blood mRNA": [
+ [
+ "998",
+ "GTEXv8_Wbl_tpm_0220",
+ "GTEXv8 Human Whole Blood RNA-Seq (Feb20) TPM log2"
+ ],
+ [
+ "949",
+ "GTEXv8_Wbl_0220",
+ "GTEXv8 Human Whole Blood RNA-Seq (Feb20) log2"
+ ]
+ ]
+ },
"HB": {
"Cerebellum mRNA": [
[
@@ -1491,6 +2100,13 @@
]
},
"Islets-Gerling": {
+ "Islets mRNA": [
+ [
+ "824",
+ "UTHSC_HuIslets_Mar17",
+ "UTHSC Human Islets Affy Human Gene 2.0 ST (Mar17) RMA"
+ ]
+ ],
"Phenotypes": [
[
"None",
@@ -1516,95 +2132,46 @@
]
}
},
- "mouse": {
- "AIL": {
- "Genotypes": [
+ "macaque monkey": {
+ "Macaca-fasicularis": {
+ "Amygdala mRNA": [
[
- "None",
- "AILGeno",
- "AIL Genotypes"
+ "255",
+ "INIA_MacFas_AMG_RMA_0110",
+ "INIA Macaca fasicularis Amygdala (Jan10) RMA"
]
],
- "Hippocampus mRNA": [
- [
- "874",
- "UCSD_AIL_HIP_RNA-Seq_log2_0418",
- "UCSD AIL Hippocampus (Apr18) RNA-Seq Log2"
- ],
+ "Brain mRNA": [
[
- "844",
- "UCSD_AIL_HIP_RNA-Seq_0418",
- "UCSD AIL Hippocampus (Apr18) RNA-Seq"
+ "251",
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA"
]
],
- "Phenotypes": [
+ "Hippocampus mRNA": [
[
- "653",
- "AILPublish",
- "AIL Phenotypes"
+ "254",
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus (Jan10) RMA"
]
],
- "Prefrontal Cortex mRNA": [
- [
- "876",
- "UCSD_AIL_PFC_RNA-Seq_log2_0418",
- "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq Log2"
- ],
+ "Nucleus Accumbens mRNA": [
[
- "846",
- "UCSD_AIL_PFC_RNA-Seq_0418",
- "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq"
+ "253",
+ "INIA_MacFas_Ac_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens (Jan10) RMA"
]
],
- "Striatum mRNA": [
- [
- "875",
- "UCSD_AIL_STR_RNA-Seq_log2_0418",
- "UCSD AIL Striatum (Apr18) RNA-Seq Log2"
- ],
- [
- "845",
- "UCSD_AIL_STR_RNA-Seq_0418",
- "UCSD AIL Striatum (Apr18) RNA-Seq"
- ]
- ]
- },
- "AIL-LGSM-F34-A": {
- "Phenotypes": [
- [
- "655",
- "AIL-LGSM-F34-APublish",
- "AIL F34-A Phenotypes"
- ]
- ]
- },
- "AIL-LGSM-F34-F39-43-GBS": {
- "Phenotypes": [
- [
- "654",
- "AIL-LGSM-F34-F39-43-GBSPublish",
- "AIL F34-F39-43-GBS Phenotypes"
- ]
- ]
- },
- "AIL-LGSM-F34-GBS": {
- "Phenotypes": [
- [
- "656",
- "AIL-LGSM-F34-GBSPublish",
- "AIL F34-GBS Phenotypes"
- ]
- ]
- },
- "AIL-LGSM-F39-43-GBS": {
- "Phenotypes": [
+ "Prefrontal Cortex mRNA": [
[
- "657",
- "AIL-LGSM-F39-43-GBSPublish",
- "AIL F39-43-GBS Phenotypes"
+ "252",
+ "INIA_MacFas_Pf_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex (Jan10) RMA"
]
]
- },
+ }
+ },
+ "mouse": {
"AKXD": {
"Genotypes": [
[
@@ -1685,6 +2252,22 @@
]
]
},
+ "B6-Lens": {
+ "Ocular Lens mRNA": [
+ [
+ "999",
+ "MouseB6Lens_rma_0220",
+ "Mouse Ocular Lens Developmental Timecourse (Feb20) RMA"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "None",
+ "B6-LensPublish",
+ "B6-Lens Phenotypes"
+ ]
+ ]
+ },
"B6BTBRF2": {
"Genotypes": [
[
@@ -1720,6 +2303,25 @@
"B6D2Publish",
"UTHSC-Glaucoma-Aged-Retina Phenotypes"
]
+ ],
+ "Retina mRNA": [
+ [
+ "803",
+ "UTHSC_mm9_B6D2_Ret_0916",
+ "UTHSC B6D2 Retina Affy MoGene 1.0ST (Sep16) Gene Level RMA"
+ ],
+ [
+ "804",
+ "UTHSC_mm9_B6D2_RetEx_0916",
+ "UTHSC B6D2 Retina Affy MoGene 1.0ST (Sep16) Exon Level RMA"
+ ]
+ ],
+ "Retina microRNA": [
+ [
+ "806",
+ "UTHSC_mm10_B6D2_Ret_miRNA_1116",
+ "UTHSC B6D2 Retina Affy miRNA-4.0 (Nov16) RMA"
+ ]
]
},
"B6D2F2": {
@@ -1771,6 +2373,28 @@
"B6D2F2-PSU Genotypes"
]
],
+ "Muscle mRNA": [
+ [
+ "134",
+ "PSU-B6D2F2_0812",
+ "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA"
+ ],
+ [
+ "404",
+ "PSU-B6D2F2_F0812",
+ "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Females"
+ ],
+ [
+ "405",
+ "PSU-B6D2F2_M0812",
+ "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males"
+ ],
+ [
+ "406",
+ "PSU-B6D2F2_M2000812",
+ "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males Aged 200*"
+ ]
+ ],
"Phenotypes": [
[
"None",
@@ -1906,6 +2530,23 @@
"UCLA BHF2 Liver (June05) mlratio"
]
],
+ "Muscle mRNA": [
+ [
+ "203",
+ "UCLA_BHF2_MUSCLE_FEMALE",
+ "UCLA BHF2 Muscle Female mlratio*"
+ ],
+ [
+ "202",
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio*"
+ ],
+ [
+ "168",
+ "UCLA_BHF2_MUSCLE_0605",
+ "UCLA BHF2 Muscle (June05) mlratio*"
+ ]
+ ],
"Phenotypes": [
[
"None",
@@ -2090,6 +2731,26 @@
"414",
"UCLA_BXD-on_Femur_0113_RSN",
"UCLA GSE27483 BXD Only Bone Femur ILM Mouse WG-6 v1.1 (Jan13) RSN"
+ ],
+ [
+ "464",
+ "UTHSCWGU88BFMG1013",
+ "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA"
+ ],
+ [
+ "465",
+ "UTHSCWGU88BFMEx1013",
+ "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA"
+ ],
+ [
+ "466",
+ "UTHSCWGU88BFFG1013",
+ "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA"
+ ],
+ [
+ "467",
+ "UTHSCWGU88BFFEx1013",
+ "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA"
]
],
"Brain mRNA": [
@@ -2221,6 +2882,76 @@
"9",
"CB_M_1003_M",
"SJUT Cerebellum mRNA M430 (Oct03) MAS5"
+ ],
+ [
+ "436",
+ "CMMTUBCBXDCerILM0513",
+ "UBC/CMMT BXD Cerebellum All Ages Combined ILM Mouse WG-6 v2.0 (May13) RankInv"
+ ],
+ [
+ "441",
+ "CMMTUBCBXDG12CerILM0513",
+ "UBC/CMMT BXD E12 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
+ ],
+ [
+ "442",
+ "CMMTUBCBXDG15CerILM0513",
+ "UBC/CMMT BXD E15 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
+ ],
+ [
+ "443",
+ "CMMTUBCBXDG18CerILM0513",
+ "UBC/CMMT BXD E18 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
+ ],
+ [
+ "437",
+ "CMMTUBCBXDP00CerILM0513",
+ "UBC/CMMT BXD P0 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
+ ],
+ [
+ "438",
+ "CMMTUBCBXDP03CerILM0513",
+ "UBC/CMMT BXD P3 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
+ ],
+ [
+ "439",
+ "CMMTUBCBXDP06CerILM0513",
+ "UBC/CMMT BXD P6 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
+ ],
+ [
+ "440",
+ "CMMTUBCBXDP09CerILM0513",
+ "UBC/CMMT BXD P9 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv"
+ ],
+ [
+ "415",
+ "GenEx_BXD_CerebEt_RMA_0213",
+ "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes"
+ ],
+ [
+ "416",
+ "GenEx_BXD_CerebEt_RMA_F_0213",
+ "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Females"
+ ],
+ [
+ "417",
+ "GenEx_BXD_CerebEt_RMA_M_0213",
+ "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Males"
+ ],
+ [
+ "418",
+ "GenEx_BXD_CerebSal_RMA_0213",
+ "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes"
+ ],
+ [
+ "419",
+ "GenEx_BXD_CerebSal_RMA_F_0213",
+ "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Females"
+ ],
+ [
+ "420",
+ "GenEx_BXD_CerebSal_RMA_M_0213",
+ "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Males"
]
],
"Eye mRNA": [
@@ -2297,6 +3028,21 @@
"597",
"UTHSC_GutExL_0414",
"UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Exon Level (Apr14) RMA"
+ ],
+ [
+ "839",
+ "EPFL-LISP_BXD_Col-CD+HFD0917",
+ "EPFL/LISP BXD CD+HFD Gastrointestinal Affy Clariom S GeneLevel Main (Sep17) RMA"
+ ],
+ [
+ "841",
+ "EPFL-LISP_BXD_Col-HFD0917",
+ "EPFL/LISP BXD HFD Gastrointestinal Affy Clariom S GeneLevel Main (Sep17) RMA"
+ ],
+ [
+ "840",
+ "EPFL-LISP_BXD_Col-CD0917",
+ "EPFL/LISP BXD CD Gastrointestinal Affy Clariom S GeneLevel Main (Sep17) RMA"
]
],
"Genotypes": [
@@ -2502,6 +3248,23 @@
"711",
"UTHSC_BXD_AgeHipp0515",
"UTHSC BXD Aged Hippocampus Affy MoGene1.0 ST (May15) RMA Gene Level"
+ ],
+ [
+ "393",
+ "UTHSC_BXD_HArev3_0912",
+ "UTHSC BXD Aged Hippocampus rev3 Affy Mouse Gene 1.0 ST (Sep12) RMA"
+ ],
+ [
+ "392",
+ "UTHSC_BXD_H_0912",
+ "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA Exon Level"
+ ]
+ ],
+ "Hippocampus microRNA": [
+ [
+ "491",
+ "UTHSC_BXD_Hip_miRNASeq0214",
+ "UTHSC BXD Hippocampus Ion Torrent microRNA (Feb14) RPKM*"
]
],
"Hypothalamus mRNA": [
@@ -2578,6 +3341,30 @@
"Mouse Kidney M430v2 (Jul06) PDNN"
]
],
+ "Leucocytes mRNA": [
+ [
+ "218",
+ "Illum_BXD_PBL_1108",
+ "UWA Illumina PBL (Nov08) RSN*"
+ ]
+ ],
+ "Liver DNAm": [
+ [
+ "891",
+ "UTHSC-BXD-LivDNAm-1119",
+ "UTHSC BXD Liver CD-HFD DNAm (Nov19) Sesame"
+ ],
+ [
+ "892",
+ "UTHSC-BXD-LivHFDNAm-1119",
+ "UTHSC BXD Liver HFD DNAm (Nov19) Sesame"
+ ],
+ [
+ "893",
+ "UTHSC-BXD-LivCDNAm-1119",
+ "UTHSC BXD Liver CD DNAm (Nov19) Sesame"
+ ]
+ ],
"Liver Metabolome": [
[
"835",
@@ -2617,6 +3404,21 @@
],
"Liver Proteome": [
[
+ "887",
+ "EPFL-ETHZ-BXD-LivProtAvg-CD-HF-1119",
+ "EPFL/ETHZ BXD Liver Proteome CD+HFD (Nov19)"
+ ],
+ [
+ "888",
+ "EPFL-ETHZ-BXD-LivProtAvg-CD-1119",
+ "EPFL/ETHZ BXD Liver Proteome CD (Nov19)"
+ ],
+ [
+ "889",
+ "EPFL-ETHZ-BXD-LivProtAvg-HFD-1119",
+ "EPFL/ETHZ BXD Liver Proteome HFD (Nov19)"
+ ],
+ [
"540",
"EPFLETHZBXDprotCD0514",
"EPFL/ETHZ BXD Liver, Chow Diet (Jun16) Top100 SWATH"
@@ -2684,6 +3486,21 @@
"NIA Aging BXD CD Liver RNA-Seq (Aug18) Log2"
],
[
+ "851",
+ "NIA-AgBXD-Liv_CDHFD-0818",
+ "NIA Aging BXD CD+HFD Liver Affy Clariom S Gene Level (Aug18) RMA"
+ ],
+ [
+ "852",
+ "NIA-AgBXD-Liv_HFD-0818",
+ "NIA Aging BXD HFD Liver Affy Clariom S Gene Level (Aug18) RMA"
+ ],
+ [
+ "853",
+ "NIA-AgBXD-Liv_CD-0818",
+ "NIA Aging BXD CD Liver Affy Clariom S Gene Level (Aug18) RMA"
+ ],
+ [
"818",
"UCLA_BXD_Liv_Jan16",
"UCLA BXD Liver Affy M430 2.0 (Jan16) RMA"
@@ -2799,6 +3616,26 @@
"161",
"HZI_0408_M",
"HZI Lung M430v2 (Apr08) MAS5"
+ ],
+ [
+ "807",
+ "HZI_LungBXD_RNA-Seq_1116",
+ "HZI Lung Flu Infected BXD (Nov16) RNA-Seq*"
+ ],
+ [
+ "598",
+ "HZI_PR8M-F_1014",
+ "HZI PR8M-Infected Lungs Females RNAseq (Oct14) RPKM Log2*"
+ ],
+ [
+ "387",
+ "HZI_PR8M_Q_0612",
+ "HZI PR8M-Infected Lungs Agilent4x44 (Apr12) Quantile Females"
+ ],
+ [
+ "424",
+ "HZI_LTCF_0313",
+ "HZI Lung Time Course Flu PR8M (Mar13) Schughart*"
]
],
"Midbrain mRNA": [
@@ -2808,6 +3645,23 @@
"VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile"
]
],
+ "Muscle Metabolome": [
+ [
+ "476",
+ "EPFL-LISP_MusPMetCDHFD1213",
+ "EPFL/LISP BXD Muscle Polar Metabolites CD+HFD (Jun14)"
+ ],
+ [
+ "477",
+ "EPFL-LISP_MusPMetHFD1213",
+ "EPFL/LISP BXD Muscle Polar Metabolites HFD (Jun14)"
+ ],
+ [
+ "478",
+ "EPFL-LISP_MusPMetCD1213",
+ "EPFL/LISP BXD Muscle Polar Metabolites CD (Jun14)"
+ ]
+ ],
"Muscle mRNA": [
[
"378",
@@ -2877,11 +3731,68 @@
"BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv"
]
],
+ "Neutrophils mRNA": [
+ [
+ "595",
+ "UTHSC-Neut-1014",
+ "UTHSC Elicited Peritoneal Neutrophils Affy MoGene 2.0 ST (Oct14) RMA"
+ ],
+ [
+ "596",
+ "UTHSC-Neut_EL-1014",
+ "UTHSC Elicited Peritoneal Neutrophils Affy MoGene 2.0 ST (Oct14) RMA Exon Level"
+ ]
+ ],
"Nucleus Accumbens mRNA": [
[
"156",
"VCUSalo_1007_R",
"VCU BXD NAc Sal M430 2.0 (Oct07) RMA"
+ ],
+ [
+ "792",
+ "VCU_BXD_Nac_CIE_Air_0416",
+ "VCU BXD NAc CIE Air Masked ComBat M430 2.0 (Apr16) RMA"
+ ],
+ [
+ "793",
+ "VCU_BXD_Nac_CIE_AirZ_0416",
+ "VCU BXD NAc CIE Air Masked ComBat M430 2.0 (Apr16) RMA Z-score"
+ ],
+ [
+ "794",
+ "VCU_BXD_Nac_CIE_Et_0416",
+ "VCU BXD NAc CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA"
+ ],
+ [
+ "795",
+ "VCU_BXD_Nac_CIE_EtZ_0416",
+ "VCU BXD NAc CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA Z-score"
+ ],
+ [
+ "155",
+ "VCUEtOH_1007_R",
+ "VCU BXD NAc EtOH M430 2.0 (Oct07) RMA"
+ ],
+ [
+ "154",
+ "VCUSal_1007_R",
+ "VCU BXD NAc EtOH vs Sal M430 2.0 (Oct07) Sscore*"
+ ],
+ [
+ "409",
+ "VCU_NAc_Air_0113_R",
+ "VCU BXD NAc CIE Air M430 2.0 (Jan13) RMA"
+ ],
+ [
+ "408",
+ "VCU_NAc_Et_0113_R",
+ "VCU BXD NAc CIE EtOH M430 2.0 (Jan13) RMA"
+ ],
+ [
+ "407",
+ "VCU_NAc_AvE_0113_Ss",
+ "VCU BXD NAc EtOH vs CIE Air M430 2.0 (Jan13) Sscore*"
]
],
"Phenotypes": [
@@ -2918,8 +3829,45 @@
"INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Exon Level"
]
],
+ "Popliteal Lymph Node mRNA": [
+ [
+ "390",
+ "STJ_PLN_0912",
+ "St Jude BXD Popliteal Lymph Node Affy HT MG-430 PM (Sep12) RMA"
+ ]
+ ],
"Prefrontal Cortex mRNA": [
[
+ "898",
+ "DOD-BXD-PFC-CD-RNA-Seq-ComB-1019",
+ "DOD BXD PFC GWI CD RNA-Seq ComB (Dec19) TPM Log2"
+ ],
+ [
+ "899",
+ "DOD-BXD-PFC-CTL-RNA-Seq-ComB-1019",
+ "DOD BXD PFC GWI CTL RNA-Seq ComB (Dec19) TPM Log2"
+ ],
+ [
+ "900",
+ "DOD-BXD-PFC-DFP-RNA-Seq-ComB-1019",
+ "DOD BXD PFC GWI DFP RNA-Seq ComB (Dec19) TPM Log2"
+ ],
+ [
+ "883",
+ "DOD-BXD-PFC-CD-RNA-Seq-1019",
+ "DOD BXD PFC GWI CD RNA-Seq (Oct19) TPM Log2"
+ ],
+ [
+ "884",
+ "DOD-BXD-PFC-CTL-RNA-Seq-1019",
+ "DOD BXD PFC GWI CTL RNA-Seq (Oct19) TPM Log2"
+ ],
+ [
+ "885",
+ "DOD-BXD-PFC-DFP-RNA-Seq-1019",
+ "DOD BXD PFC GWI DFP RNA-Seq (Oct19) TPM Log2"
+ ],
+ [
"135",
"VCUSal_1206_R",
"VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
@@ -2933,6 +3881,41 @@
"137",
"VCUSal_1006_R",
"VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
+ [
+ "788",
+ "VCU_BXD_PFC_CIE_Air_0416",
+ "VCU BXD PFC CIE Air Masked ComBat M430 2.0 (Apr16) RMA"
+ ],
+ [
+ "789",
+ "VCU_BXD_PFC_CIE_AirZ_0416",
+ "VCU BXD PFC CIE Air Masked ComBat M430 2.0 (Apr16) RMA Z-score"
+ ],
+ [
+ "790",
+ "VCU_BXD_PFC_CIE_Et_0416",
+ "VCU BXD PFC CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA"
+ ],
+ [
+ "791",
+ "VCU_BXD_PFC_CIE_EtZ_0416",
+ "VCU BXD PFC CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA Z-score"
+ ],
+ [
+ "299",
+ "VCU_PF_AvE_0111_Ss",
+ "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore*"
+ ],
+ [
+ "300",
+ "VCU_PF_Et_0111_R",
+ "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA"
+ ],
+ [
+ "301",
+ "VCU_PF_Air_0111_R",
+ "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA"
]
],
"Retina mRNA": [
@@ -2972,11 +3955,26 @@
"DoD Retina After Blast Affy MoGene 2.0 ST (Mar16) RMA Exon Level"
],
[
+ "796",
+ "DoDRetBlastvsNormalEx_0416",
+ "DoD Retina Blast vs Normal Retina Affy MoGene 2.0 ST (Apr16) RMA Exon Level"
+ ],
+ [
"385",
"ONCRetILM6_0412",
"ONC HEI Retina (April 2012) RankInv"
],
[
+ "386",
+ "B6D2ONCILM_0412",
+ "B6D2 ONC Retina (April 2012) RankInv"
+ ],
+ [
+ "372",
+ "G2HEIONCRetILM6_0911",
+ "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv"
+ ],
+ [
"371",
"HEIONCvsCRetILM6_0911",
"HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv"
@@ -3027,6 +4025,11 @@
"227",
"IoP_SPL_RMA_0509",
"IoP Affy MOE 430v2 Spleen (May09) RMA"
+ ],
+ [
+ "216",
+ "Illum_BXD_Spl_1108",
+ "UWA Illumina Spleen (Nov08) RSN*"
]
],
"Striatum mRNA": [
@@ -3105,6 +4108,13 @@
"HZI Treg M430v2 (Feb11) RMA"
]
],
+ "Thymus mRNA": [
+ [
+ "217",
+ "Illum_BXD_Thy_1108",
+ "UWA Illumina Thymus (Nov08) RSN*"
+ ]
+ ],
"Ventral Tegmental Area mRNA": [
[
"228",
@@ -3140,13 +4150,27 @@
"BXD-Harvested Genotypes"
]
],
- "Hippocampus mRNA": [
+ "Hippocampus Proteome": [
[
"873",
"JAX-BXD-Hip-Pro-0219",
"JAX BXD Hippocampal Proteome (Feb19)"
]
],
+ "Liver DNAm": [
+ [
+ "890",
+ "INIA-BXD-LivDNAm-1119",
+ "INIA BXD Liver DNAm CD-HFD (Nov19) Sesame"
+ ]
+ ],
+ "Liver Proteome": [
+ [
+ "886",
+ "EPFL-ETHZ-BXD-LivProtCD-HF-1119",
+ "EPFL/ETHZ BXD Liver Proteome CD-HFD (Nov19)"
+ ]
+ ],
"Liver mRNA": [
[
"877",
@@ -3154,14 +4178,24 @@
"UTHSC BXD Harvested Liver RNA-Seq (Oct19) TPM Log2"
],
[
+ "850",
+ "UTHSC-BXD-Liv-0818",
+ "UTHSC BXD Liver Affy Clariom S GeneLevel Main (Aug18) RMA"
+ ],
+ [
"843",
"UTHSC-BXD-Harv_Liv-0118",
"UTHSC BXD Harvested Liver RNA-Seq (Aug18) Log2"
+ ],
+ [
+ "842",
+ "UTHSC-BXD-Liv-0917",
+ "UTHSC BXD Liver Affy Clariom S GeneLevel Main (Sep17) RMA"
]
],
"Phenotypes": [
[
- "None",
+ "660",
"BXD-HarvestedPublish",
"BXD-NIA-Longevity Phenotypes"
]
@@ -3263,6 +4297,29 @@
]
]
},
+ "CC": {
+ "Genotypes": [
+ [
+ "663",
+ "CCGeno",
+ "CC Genotypes"
+ ]
+ ],
+ "Midbrain mRNA": [
+ [
+ "894",
+ "LSRU-CC-ST-1219",
+ "LSRU CC Male Midbrain RNA-Seq (Dec19) TPM Log2"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "662",
+ "CCPublish",
+ "CC Phenotypes"
+ ]
+ ]
+ },
"CFW": {
"Hippocampus mRNA": [
[
@@ -3360,9 +4417,35 @@
"CIE-RMAPublish",
"CIE-RMA Phenotypes"
]
+ ],
+ "Prefrontal Cortex mRNA": [
+ [
+ "832",
+ "INIA_UTHSC_PFC_AffyMTA1_May17",
+ "INIA-UTHSC Prefrontal Cortex CIE Affy MTA 1.0 GeneLevel (Apr17) RMA"
+ ]
+ ],
+ "Striatum mRNA": [
+ [
+ "833",
+ "INIA_UTHSC_Str_AffyMTA1_May17",
+ "INIA-UTHSC Striatum CIE Affy MTA 1.0 GeneLevel (Apr17) RMA"
+ ]
]
},
"CMS": {
+ "Hippocampus mRNA": [
+ [
+ "771",
+ "CMS_Hipp1115",
+ "Hippocampus Mouse Transcriptome Assay 1.0 Gene Level Main (Nov15) RMA"
+ ],
+ [
+ "800",
+ "CMS_Hipp_ZScr_1115",
+ "Hippocampus Mouse Transcriptome Assay 1.0 Gene Level Z-Score (Nov15) RMA"
+ ]
+ ],
"Phenotypes": [
[
"None",
@@ -3520,6 +4603,92 @@
]
]
},
+ "DOD-BXD-GWI": {
+ "Genotypes": [
+ [
+ "None",
+ "DOD-BXD-GWIGeno",
+ "DOD-BXD-GWI Genotypes"
+ ]
+ ],
+ "Prefrontal Cortex mRNA": [
+ [
+ "895",
+ "DOD-BXD-Ind-PFC-CD-RNA-Seq-ComB-1019",
+ "DOD BXD INDV PFC GWI CD RNA-Seq ComB (Dec19) TPM Log2"
+ ],
+ [
+ "896",
+ "DOD-BXD-Ind-PFC-CTL-RNA-Seq-ComB-1019",
+ "DOD BXD INDV PFC GWI CTL RNA-Seq ComB (Dec19) TPM Log2"
+ ],
+ [
+ "897",
+ "DOD-BXD-Ind-PFC-DFP-RNA-Seq-ComB-1019",
+ "DOD BXD INDV PFC GWI DFP RNA-Seq ComB (Dec19) TPM Log2"
+ ],
+ [
+ "880",
+ "DOD-BXD-Ind-PFC-CD-RNA-Seq-1019",
+ "DOD BXD INDV PFC GWI CD RNA-Seq (Oct19) TPM Log2"
+ ],
+ [
+ "881",
+ "DOD-BXD-Ind-PFC-CTL-RNA-Seq-1019",
+ "DOD BXD INDV PFC GWI CTL RNA-Seq (Oct19) TPM Log2"
+ ],
+ [
+ "882",
+ "DOD-BXD-Ind-PFC-DFP-RNA-Seq-1019",
+ "DOD BXD INDV PFC GWI DFP RNA-Seq (Oct19) TPM Log2"
+ ]
+ ]
+ },
+ "EMSR": {
+ "Hippocampus mRNA": [
+ [
+ "825",
+ "UTHSC_EMSR_All_AffyMTA1_Mar17",
+ "UTHSC Hippocampus All Treatments Affy MTA 1.0 Gene Level (Mar17) RMA"
+ ],
+ [
+ "826",
+ "UTHSC_EMSR_Sal_AffyMTA1_Mar17",
+ "UTHSC Hippocampus Saline Affy MTA 1.0 Gene Level (Mar17) RMA"
+ ],
+ [
+ "827",
+ "UTHSC_EMSR_Et_AffyMTA1_Mar17",
+ "UTHSC Hippocampus Ethanol Affy MTA 1.0 Gene Level (Mar17) RMA"
+ ],
+ [
+ "828",
+ "UTHSC_EMSR_St_AffyMTA1_Mar17",
+ "UTHSC Hippocampus Stress Affy MTA 1.0 Gene Level (Mar17) RMA"
+ ],
+ [
+ "829",
+ "UTHSC_EMSR_EtSt_AffyMTA1_Mar17",
+ "UTHSC Hippocampus Ethanol-Stress Affy MTA 1.0 Gene Level (Mar17) RMA"
+ ]
+ ]
+ },
+ "HET3-ITP": {
+ "Genotypes": [
+ [
+ "None",
+ "HET3-ITPGeno",
+ "HET3-ITP Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "661",
+ "HET3-ITPPublish",
+ "HET3 ITP Longevity Phenotypes"
+ ]
+ ]
+ },
"HS": {
"Hippocampus mRNA": [
[
@@ -3559,16 +4728,123 @@
]
]
},
- "LGSM-AIG34_50-56-GBS": {
+ "JAX-D2-Mono-RNA-Seq": {
+ "Retina mRNA": [
+ [
+ "878",
+ "JAX-D2-Mono1vPBMC-Ret-RNA-Seq-0619",
+ "JAX DBA/2J Monocyte 1 vs PBMC RNA-Seq (Jun19)"
+ ],
+ [
+ "879",
+ "JAX-D2-Mono2vPBMC-Ret-RNA-Seq-0619",
+ "JAX DBA/2J Monocyte 2 vs PBMC RNA-Seq (Jun19)"
+ ]
+ ]
+ },
+ "LGSM-AI": {
+ "Hippocampus mRNA": [
+ [
+ "874",
+ "UCSD_AIL_HIP_RNA-Seq_log2_0418",
+ "UCSD AIL Hippocampus (Apr18) RNA-Seq Log2"
+ ],
+ [
+ "844",
+ "UCSD_AIL_HIP_RNA-Seq_0418",
+ "UCSD AIL Hippocampus (Apr18) RNA-Seq"
+ ]
+ ],
"Phenotypes": [
[
"None",
+ "LGSM-AIPublish",
+ "LGSM AI Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex mRNA": [
+ [
+ "876",
+ "UCSD_AIL_PFC_RNA-Seq_log2_0418",
+ "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq Log2"
+ ],
+ [
+ "846",
+ "UCSD_AIL_PFC_RNA-Seq_0418",
+ "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq"
+ ]
+ ],
+ "Striatum mRNA": [
+ [
+ "875",
+ "UCSD_AIL_STR_RNA-Seq_log2_0418",
+ "UCSD AIL Striatum (Apr18) RNA-Seq Log2"
+ ],
+ [
+ "845",
+ "UCSD_AIL_STR_RNA-Seq_0418",
+ "UCSD AIL Striatum (Apr18) RNA-Seq"
+ ]
+ ]
+ },
+ "LGSM-AI-G34-A": {
+ "Phenotypes": [
+ [
+ "655",
+ "LGSM-AI-G34-APublish",
+ "LGSM AI G34 Phenotypes"
+ ]
+ ]
+ },
+ "LGSM-AI-G34-GBS": {
+ "Phenotypes": [
+ [
+ "656",
+ "LGSM-AI-G34-GBSPublish",
+ "LGSM AI G34 GBS Phenotypes"
+ ]
+ ]
+ },
+ "LGSM-AI-G34_39-43-GBS": {
+ "Phenotypes": [
+ [
+ "657",
+ "LGSM-AI-G34_39-43-GBSPublish",
+ "LGSM AI G34 G39-43 GBS Phenotypes"
+ ]
+ ]
+ },
+ "LGSM-AI-G39-43-GBS": {
+ "Phenotypes": [
+ [
+ "654",
+ "LGSM-AI-G39-43-GBSPublish",
+ "LGSM AI G39-43 GBS Phenotypes"
+ ]
+ ]
+ },
+ "LGSM-AIG34_50-56-GBS": {
+ "Phenotypes": [
+ [
+ "659",
"LGSM-AIG34_50-56-GBSPublish",
- "LGSM AIG34/50-56 GBS Phenotypes"
+ "LGSM AI G34/50-56 GBS Phenotypes"
]
]
},
"LXS": {
+ "Brain mRNA": [
+ [
+ "783",
+ "UCAMC_LXSBrEtOH_RNA-Seq_0216",
+ "UCAMC LXS Whole Brain Ethanol RNA Sequence (Feb16) FPKM*"
+ ],
+ [
+ "784",
+ "UCAMC_LXSBrSal_RNA-Seq_0216",
+ "UCAMC LXS Whole Brain Saline RNA Sequence (Feb16) FPKM*"
+ ]
+ ],
"Genotypes": [
[
"601",
@@ -3650,6 +4926,16 @@
"130",
"VCUSal_0806_R",
"VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
+ ],
+ [
+ "132",
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore*"
+ ],
+ [
+ "131",
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA"
]
]
},
@@ -3701,6 +4987,11 @@
"273",
"UMUTAffyExon_0209_RMA_MDP",
"UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "594",
+ "UFL-MDP-Hipp0814",
+ "UFL MDP Hippocampus Antidepressant Affy Mouse 430 2.0 (Aug14) RMA"
]
],
"Liver mRNA": [
@@ -3795,6 +5086,36 @@
"SOTNOT-OHSU Genotypes"
]
]
+ },
+ "Scripps-2013": {
+ "Anterior Cingulate Cortex mRNA": [
+ [
+ "450",
+ "ScrBXDACC4G0513",
+ "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Gene Level"
+ ],
+ [
+ "451",
+ "ScrBXDACC4GEx0513",
+ "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Exon Level"
+ ]
+ ]
+ },
+ "UTHSC-Cannabinoid": {
+ "Genotypes": [
+ [
+ "None",
+ "UTHSC-CannabinoidGeno",
+ "UTHSC-Cannabinoid Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "None",
+ "UTHSC-CannabinoidPublish",
+ "UTHSC Cannabinoid Pilot Phenotypes"
+ ]
+ ]
}
},
"poplar": {
@@ -3809,22 +5130,6 @@
}
},
"rat": {
- "HRDP": {
- "Genotypes": [
- [
- "None",
- "HRDPGeno",
- "HRDP Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "None",
- "HRDPPublish",
- "HRDP Phenotypes"
- ]
- ]
- },
"HSNIH-Palmer": {
"Infralimbic Cortex mRNA": [
[
@@ -3867,6 +5172,23 @@
"HSNIH-Rat-PL-RSeq-0818",
"HSNIH-Palmer Prelimbic Cortex RNA-Seq (Aug18) rlog"
]
+ ],
+ "Prefrontal Cortex mRNA": [
+ [
+ "864",
+ "HSNIH-Rat-VoLo-RSeq-0818",
+ "HSNIH-Palmer Orbitofrontal Cortex RNA-Seq (Aug18) rlog"
+ ],
+ [
+ "863",
+ "HSNIH-Rat-PL-RSeq-0818",
+ "HSNIH-Palmer Prelimbic Cortex RNA-Seq (Aug18) rlog"
+ ],
+ [
+ "861",
+ "HSNIH-Rat-IL-RSeq-0818",
+ "HSNIH-Palmer Infralimbic Cortex RNA-Seq (Aug18) rlog"
+ ]
]
},
"HSNIH-RGSMC": {
@@ -4011,295 +5333,411 @@
"arabidopsis": [
[
"BayXSha",
- "BayXSha"
+ "BayXSha",
+ "Family:None"
],
[
"ColXBur",
- "ColXBur"
+ "ColXBur",
+ "Family:None"
],
[
"ColXCvi",
- "ColXCvi"
+ "ColXCvi",
+ "Family:None"
]
],
"barley": [
[
"QSM",
- "QSM"
+ "QSM",
+ "Family:None"
],
[
"SXM",
- "SXM"
+ "SXM",
+ "Family:None"
]
],
"drosophila": [
[
"DGRP",
- "Drosophila Genetic Reference Panel"
+ "Drosophila Genetic Reference Panel",
+ "Family:None"
],
[
"Oregon-R_x_2b3",
- "Oregon-R x 2b3"
+ "Oregon-R x 2b3",
+ "Family:None"
]
],
"human": [
[
"HB",
- "Brain, Aging: AD, HD, Normal Gene Expression (Harvard/Merck)"
+ "Brain, Aging: AD, HD, Normal Gene Expression (Harvard/Merck)",
+ "Family:None"
],
[
"AD-cases-controls",
- "Brain, Aging: AD, Normal Gene Expression (Liang)"
+ "Brain, Aging: AD, Normal Gene Expression (Liang)",
+ "Family:None"
],
[
"AD-cases-controls-Myers",
- "Brain, Aging: AD, Normal Gene Expression with Genotypes (Myers)"
+ "Brain, Aging: AD, Normal Gene Expression with Genotypes (Myers)",
+ "Family:None"
],
[
"Aging-Brain-UCI",
- "Brain, Aging: Normal Gene Expression (UCI/Cotman)"
+ "Brain, Aging: Normal Gene Expression (UCI/Cotman)",
+ "Family:None"
],
[
"HCP",
- "Brain, Cognition, Human Connectome Project"
+ "Brain, Cognition, Human Connectome Project",
+ "Family:None"
],
[
"HSB",
- "Brain, Development: Normal Gene Expression (Yale/Sestan)"
+ "Brain, Development: Normal Gene Expression (Yale/Sestan)",
+ "Family:None"
],
[
"Brain-Normal-NIH-Gibbs",
- "Brain: Normal Gene Expression (NIH/Gibbs)"
+ "Brain: Normal Gene Expression (NIH/Gibbs)",
+ "Family:None"
],
[
"CANDLE",
- "Child Development: CANDLE Cohort with Genotypes (TUCI/UTHSC)"
+ "Child Development: CANDLE Cohort with Genotypes (TUCI/UTHSC)",
+ "Family:None"
],
[
"GTEx",
- "GTEx v3 All Tissues, RNA-Seq with Genotypes"
+ "GTEx v3 All Tissues, RNA-Seq with Genotypes",
+ "Family:None"
],
[
"GTEx_v5",
- "GTEx v5 All Tissues, RNA-Seq with Genotypes"
+ "GTEx v5 All Tissues, RNA-Seq with Genotypes",
+ "Family:None"
+ ],
+ [
+ "GTEx_v8",
+ "GTEx v8 All Tissues, RNA-Seq without Genotypes",
+ "Family:None"
],
[
"HLC",
- "Liver: Normal Gene Expression with Genotypes (Merck)"
+ "Liver: Normal Gene Expression with Genotypes (Merck)",
+ "Family:None"
],
[
"HLT",
- "Lung: Normal Gene Expression (Merck)"
+ "Lung: Normal Gene Expression (Merck)",
+ "Family:None"
],
[
"CEPH-2004",
- "Lymphoblastoid Cells: Gene Expression (CEPH, Williams)"
+ "Lymphoblastoid Cells: Gene Expression (CEPH, Williams)",
+ "Family:None"
],
[
"Islets-Gerling",
- "Pancreatic: Islets (UTHSC/Gerling)"
+ "Pancreatic: Islets (UTHSC/Gerling)",
+ "Family:None"
],
[
"TIGEM-Retina-RNA-Seq",
- "Retina: Normal Adult Gene Expression, RNA-Seq (TIGEM)"
+ "Retina: Normal Adult Gene Expression, RNA-Seq (TIGEM)",
+ "Family:None"
+ ]
+ ],
+ "macaque monkey": [
+ [
+ "Macaca-fasicularis",
+ "Macaca fasicularis (Cynomolgus monkey)",
+ "Family:None"
]
],
"mouse": [
[
- "AIL",
- "AIL Advanced Intercross Line"
+ "AKXD",
+ "AKXD Family",
+ "Family:Reference Populations"
],
[
- "AIL-LGSM-F34-A",
- "AIL LGSM F34 (Array)"
+ "AXBXA",
+ "AXB/BXA Family",
+ "Family:Reference Populations"
],
[
- "AIL-LGSM-F34-GBS",
- "AIL LGSM F34 (GBS)"
+ "BXD",
+ "BXD Family",
+ "Family:Reference Populations"
],
[
- "AIL-LGSM-F34-F39-43-GBS",
- "AIL LGSM F34 and F39-43 (GBS)"
+ "BXH",
+ "BXH Family",
+ "Family:Reference Populations"
],
[
- "AIL-LGSM-F39-43-GBS",
- "AIL LGSM F39-43 (GBS)"
+ "CC",
+ "CC Family",
+ "Family:Reference Populations"
],
[
- "AKXD",
- "AKXD RI Family"
+ "CXB",
+ "CXB Family",
+ "Family:Reference Populations"
],
[
- "AXBXA",
- "AXB/BXA RI Family"
+ "LXS",
+ "ILSXISS (LXS) Family",
+ "Family:Reference Populations"
],
[
- "B6BTBRF2",
- "B6BTBRF2"
+ "MDP",
+ "Mouse Diversity Panel",
+ "Family:Reference Populations"
],
[
- "Linsenbardt-Boehm",
- "B6D2 EtOH Selected Advanced Intercross"
+ "B6D2RI",
+ "BXD Aged Hippocampus",
+ "Family:BXD Individual Data"
],
[
- "B6D2F2",
- "B6D2F2"
+ "BXD-Bone",
+ "BXD Bone Individual Data",
+ "Family:BXD Individual Data"
],
[
- "B6D2F2-PSU",
- "B6D2F2 PSU"
+ "DOD-BXD-GWI",
+ "BXD DOD Gulf War Illness",
+ "Family:BXD Individual Data"
],
[
- "BDF2-1999",
- "BDF2 UCLA"
+ "BXD-Harvested",
+ "BXD NIA Longevity Study",
+ "Family:BXD Individual Data"
],
[
- "BDF2-2005",
- "BDF2-2005"
+ "UTHSC-Cannabinoid",
+ "BXD UTHSC Cannabinoid Pilot",
+ "Family:BXD Individual Data"
],
[
- "BHHBF2",
- "BH/HB F2 UCLA"
+ "B6BTBRF2",
+ "B6BTBRF2",
+ "Family:Crosses, AIL, HS"
],
[
- "BHF2",
- "BHF2 (Apoe Null) UCLA"
+ "BHHBF2",
+ "B6C3HF2 UCLA Metabolism",
+ "Family:Crosses, AIL, HS"
],
[
- "B6D2RI",
- "BXD Aged"
+ "BHF2",
+ "B6C3HF2(APOE-) UCLA Metabolism",
+ "Family:Crosses, AIL, HS"
],
[
- "BXD-Bone",
- "BXD Bone Individual Data"
+ "Linsenbardt-Boehm",
+ "B6D2 EtOH Selected Advanced Intercross",
+ "Family:Crosses, AIL, HS"
],
[
- "BXD-Harvested",
- "BXD NIA Longevity Study"
+ "B6D2F2",
+ "B6D2F2 OHSU Brain",
+ "Family:Crosses, AIL, HS"
],
[
- "BXD",
- "BXD RI Family"
+ "BDF2-2005",
+ "B6D2F2 OHSU Striatum",
+ "Family:Crosses, AIL, HS"
],
[
- "BXD300",
- "BXD300"
+ "B6D2F2-PSU",
+ "B6D2F2 PSU Muscle",
+ "Family:Crosses, AIL, HS"
],
[
- "BXH",
- "BXH RI Family"
+ "BDF2-1999",
+ "B6D2F2 UCLA Liver",
+ "Family:Crosses, AIL, HS"
],
[
"CTB6F2",
- "CastB6/B6Cast F2 UCLA"
+ "CastB6/B6Cast F2 UCLA",
+ "Family:Crosses, AIL, HS"
],
[
"CFW",
- "CFW Outbred GWAS"
+ "CFW Outbred GWAS",
+ "Family:Crosses, AIL, HS"
],
[
- "CIE-INIA",
- "Chronic Intermittent Ethanol Phase 1"
+ "HET3-ITP",
+ "HET3 ITP Longevity",
+ "Family:Crosses, AIL, HS"
],
[
- "CIE-RMA",
- "Chronic Intermittent Ethanol Phase 2"
+ "HS",
+ "Heterogeneous Stock",
+ "Family:Crosses, AIL, HS"
],
[
- "CMS",
- "Chronic Mild Stress"
+ "HS-CC",
+ "Heterogeneous Stock Collaborative Cross",
+ "Family:Crosses, AIL, HS"
],
[
- "CXB",
- "CXB RI Family (strain means)"
+ "LGSM-AI-G34_39-43-GBS",
+ "LGSM AI G34 G39-43 Palmer (GBS)",
+ "Family:Crosses, AIL, HS"
],
[
- "D2GM",
- "D2 Glaucoma Model"
+ "LGSM-AI-G34-A",
+ "LGSM AI G34 Palmer (Array)",
+ "Family:Crosses, AIL, HS"
],
[
- "B6D2",
- "Glaucoma and Aged Retina, UTHSC"
+ "LGSM-AI-G34-GBS",
+ "LGSM AI G34 Palmer (GBS)",
+ "Family:Crosses, AIL, HS"
],
[
- "HS",
- "Heterogeneous Stock"
+ "LGSM-AIG34_50-56-GBS",
+ "LGSM AI G34/50-56 Lionikas (GBS)",
+ "Family:Crosses, AIL, HS"
],
[
- "HS-CC",
- "Heterogeneous Stock Collaborative Cross"
+ "LGSM-AI-G39-43-GBS",
+ "LGSM AI G39-43 Palmer (GBS)",
+ "Family:Crosses, AIL, HS"
],
[
- "LXS",
- "ILSXISS (LXS) RI Family (strain means)"
+ "LGSM-AI",
+ "LGSM AI Palmer",
+ "Family:Crosses, AIL, HS"
],
[
- "LGSM-AIG34_50-56-GBS",
- "LGSM AI G34/50-56 Lionikas (GBS)"
+ "SOTNOT-OHSU",
+ "SOTNOT-OHSU",
+ "Family:Crosses, AIL, HS"
],
[
- "MDP",
- "Mouse Diversity Panel (strain means)"
+ "B6-Lens",
+ "B6 Lens",
+ "Family:Non-genetic Cohort"
+ ],
+ [
+ "CIE-INIA",
+ "Chronic Intermittent Ethanol Phase 1",
+ "Family:Non-genetic Cohort"
+ ],
+ [
+ "CIE-RMA",
+ "Chronic Intermittent Ethanol Phase 2",
+ "Family:Non-genetic Cohort"
+ ],
+ [
+ "CMS",
+ "Chronic Mild Stress",
+ "Family:Non-genetic Cohort"
+ ],
+ [
+ "D2GM",
+ "D2 Glaucoma Model",
+ "Family:Non-genetic Cohort"
+ ],
+ [
+ "JAX-D2-Mono-RNA-Seq",
+ "D2 Glaucoma Monocyte JAX",
+ "Family:Non-genetic Cohort"
+ ],
+ [
+ "EMSR",
+ "Ethanol-Medicated Stress Reduction",
+ "Family:Non-genetic Cohort"
+ ],
+ [
+ "B6D2",
+ "Glaucoma and Aged Retina UTHSC",
+ "Family:Non-genetic Cohort"
],
[
"NZBXFVB-N2",
- "NZB/FVB N2 NCI"
+ "NZB/FVB N2 NCI",
+ "Family:Non-genetic Cohort"
],
[
"C57BL-6JxC57BL-6NJF2",
- "Reduced Complexity Cross (B6JxB6N F2)"
+ "Reduced Complexity Cross (B6JxB6N F2)",
+ "Family:Non-genetic Cohort"
],
[
"Retina-RGC-Rheaume",
- "Retina RGC Rheaume"
+ "Retina RGC Rheaume",
+ "Family:Non-genetic Cohort"
],
[
- "SOTNOT-OHSU",
- "SOTNOT-OHSU"
+ "Scripps-2013",
+ "Scripps C57BL/6J",
+ "Family:Non-genetic Cohort"
+ ],
+ [
+ "BXD300",
+ "BXD300",
+ "Family:None"
]
],
"poplar": [
[
"Poplar",
- "Poplar"
+ "Poplar",
+ "Family:None"
]
],
"rat": [
[
"HXBBXH",
- "HXB/BXH"
- ],
- [
- "HRDP",
- "Hybrid Rat Diversity Panel"
+ "Hybrid Rat Diversity Panel (Includes HXB/BXH)",
+ "Family:None"
],
[
"HSNIH-Palmer",
- "NIH Heterogeneous Stock (Palmer)"
+ "NIH Heterogeneous Stock (Palmer)",
+ "Family:None"
],
[
"HSNIH-RGSMC",
- "NIH Heterogeneous Stock (RGSMC 2013)"
+ "NIH Heterogeneous Stock (RGSMC 2013)",
+ "Family:None"
],
[
"SRxSHRSPF2",
- "UIOWA SRxSHRSP F2"
+ "UIOWA SRxSHRSP F2",
+ "Family:None"
]
],
"soybean": [
[
"J12XJ58F11",
- "J12XJ58F11"
+ "J12XJ58F11",
+ "Family:None"
],
[
"J12XJ58F2",
- "J12XJ58F2"
+ "J12XJ58F2",
+ "Family:None"
]
],
"tomato": [
[
"LXP",
- "LXP"
+ "LXP",
+ "Family:None"
]
]
},
@@ -4309,6 +5747,10 @@
"Human (hg19)"
],
[
+ "macaque monkey",
+ "Macaque monkey"
+ ],
+ [
"mouse",
"Mouse (mm10)"
],
@@ -4481,6 +5923,10 @@
"Phenotypes"
],
[
+ "Methylation",
+ "Methylation"
+ ],
+ [
"Newborn Cord Blood mRNA",
"Newborn Cord Blood mRNA"
]
@@ -4493,12 +5939,12 @@
],
"GTEx": [
[
- "Adipose tissue, subcutaneous mRNA",
- "Adipose tissue, subcutaneous mRNA"
+ "Adipose Tissue, Subcutaneous mRNA",
+ "Adipose Tissue, Subcutaneous mRNA"
],
[
- "Adipose tissue, visceral mRNA",
- "Adipose tissue, visceral mRNA"
+ "Adipose Tissue, Visceral mRNA",
+ "Adipose Tissue, Visceral mRNA"
],
[
"Adrenal Gland mRNA",
@@ -4687,12 +6133,12 @@
"Phenotypes"
],
[
- "Adipose tissue, subcutaneous mRNA",
- "Adipose tissue, subcutaneous mRNA"
+ "Adipose Tissue, Subcutaneous mRNA",
+ "Adipose Tissue, Subcutaneous mRNA"
],
[
- "Adipose tissue, visceral mRNA",
- "Adipose tissue, visceral mRNA"
+ "Adipose Tissue, Visceral mRNA",
+ "Adipose Tissue, Visceral mRNA"
],
[
"Adrenal Gland mRNA",
@@ -4899,6 +6345,208 @@
"Whole Blood mRNA"
]
],
+ "GTEx_v8": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Adipose Tissue, Subcutaneous mRNA",
+ "Adipose Tissue, Subcutaneous mRNA"
+ ],
+ [
+ "Adipose Tissue, Visceral mRNA",
+ "Adipose Tissue, Visceral mRNA"
+ ],
+ [
+ "Adrenal Gland mRNA",
+ "Adrenal Gland mRNA"
+ ],
+ [
+ "Amygdala mRNA",
+ "Amygdala mRNA"
+ ],
+ [
+ "Anterior Cingulate Cortex mRNA",
+ "Anterior Cingulate Cortex mRNA"
+ ],
+ [
+ "Aorta mRNA",
+ "Aorta mRNA"
+ ],
+ [
+ "Breast - Mammary Tissue mRNA",
+ "Breast - Mammary Tissue mRNA"
+ ],
+ [
+ "Caudate mRNA",
+ "Caudate mRNA"
+ ],
+ [
+ "Cells - EBV-Transformed Lymphocytes mRNA",
+ "Cells - EBV-Transformed Lymphocytes mRNA"
+ ],
+ [
+ "Cells - Transformed Fibroblasts mRNA",
+ "Cells - Transformed Fibroblasts mRNA"
+ ],
+ [
+ "Cerebellar Cortex mRNA",
+ "Cerebellar Cortex mRNA"
+ ],
+ [
+ "Cerebellar Hemisphere mRNA",
+ "Cerebellar Hemisphere mRNA"
+ ],
+ [
+ "Cerebellum mRNA",
+ "Cerebellum mRNA"
+ ],
+ [
+ "Colon - Sigmoid mRNA",
+ "Colon - Sigmoid mRNA"
+ ],
+ [
+ "Colon - Transverse mRNA",
+ "Colon - Transverse mRNA"
+ ],
+ [
+ "Coronary mRNA",
+ "Coronary mRNA"
+ ],
+ [
+ "Esophagus - Gastroesophageal mRNA",
+ "Esophagus - Gastroesophageal mRNA"
+ ],
+ [
+ "Esophagus - Mucosa mRNA",
+ "Esophagus - Mucosa mRNA"
+ ],
+ [
+ "Esophagus - Muscularis mRNA",
+ "Esophagus - Muscularis mRNA"
+ ],
+ [
+ "Frontal Cortex mRNA",
+ "Frontal Cortex mRNA"
+ ],
+ [
+ "Heart - Atrial Appendage mRNA",
+ "Heart - Atrial Appendage mRNA"
+ ],
+ [
+ "Heart - Left Ventricle mRNA",
+ "Heart - Left Ventricle mRNA"
+ ],
+ [
+ "Hippocampus mRNA",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Hypothalamus mRNA",
+ "Hypothalamus mRNA"
+ ],
+ [
+ "Kidney mRNA",
+ "Kidney mRNA"
+ ],
+ [
+ "Liver mRNA",
+ "Liver mRNA"
+ ],
+ [
+ "Lung mRNA",
+ "Lung mRNA"
+ ],
+ [
+ "Muscle mRNA",
+ "Muscle mRNA"
+ ],
+ [
+ "Nerve - Tibial mRNA",
+ "Nerve - Tibial mRNA"
+ ],
+ [
+ "Nucleus Accumbens mRNA",
+ "Nucleus Accumbens mRNA"
+ ],
+ [
+ "Ovary mRNA",
+ "Ovary mRNA"
+ ],
+ [
+ "Pancreas mRNA",
+ "Pancreas mRNA"
+ ],
+ [
+ "Pituitary Gland mRNA",
+ "Pituitary Gland mRNA"
+ ],
+ [
+ "Prostate mRNA",
+ "Prostate mRNA"
+ ],
+ [
+ "Putamen mRNA",
+ "Putamen mRNA"
+ ],
+ [
+ "Salivary Gland mRNA",
+ "Salivary Gland mRNA"
+ ],
+ [
+ "Skin - Not Sun Exposed (Suprapubic) mRNA",
+ "Skin - Not Sun Exposed (Suprapubic) mRNA"
+ ],
+ [
+ "Skin - Sun Exposed (Lower leg) mRNA",
+ "Skin - Sun Exposed (Lower leg) mRNA"
+ ],
+ [
+ "Small Intestine - Terminal Ileum mRNA",
+ "Small Intestine - Terminal Ileum mRNA"
+ ],
+ [
+ "Spinal Cord mRNA",
+ "Spinal Cord mRNA"
+ ],
+ [
+ "Spleen mRNA",
+ "Spleen mRNA"
+ ],
+ [
+ "Stomach mRNA",
+ "Stomach mRNA"
+ ],
+ [
+ "Substantia Nigra mRNA",
+ "Substantia Nigra mRNA"
+ ],
+ [
+ "Testis mRNA",
+ "Testis mRNA"
+ ],
+ [
+ "Thyroid mRNA",
+ "Thyroid mRNA"
+ ],
+ [
+ "Tibial mRNA",
+ "Tibial mRNA"
+ ],
+ [
+ "Uterus mRNA",
+ "Uterus mRNA"
+ ],
+ [
+ "Vagina mRNA",
+ "Vagina mRNA"
+ ],
+ [
+ "Whole Blood mRNA",
+ "Whole Blood mRNA"
+ ]
+ ],
"HB": [
[
"Cerebellum mRNA",
@@ -5009,6 +6657,10 @@
[
"Phenotypes",
"Phenotypes"
+ ],
+ [
+ "Islets mRNA",
+ "Islets mRNA"
]
],
"TIGEM-Retina-RNA-Seq": [
@@ -5022,53 +6674,31 @@
]
]
},
- "mouse": {
- "AIL": [
+ "macaque monkey": {
+ "Macaca-fasicularis": [
[
- "Phenotypes",
- "Phenotypes"
+ "Amygdala mRNA",
+ "Amygdala mRNA"
],
[
- "Genotypes",
- "Genotypes"
+ "Brain mRNA",
+ "Brain mRNA"
],
[
"Hippocampus mRNA",
"Hippocampus mRNA"
],
[
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
+ "Nucleus Accumbens mRNA",
+ "Nucleus Accumbens mRNA"
],
[
- "Striatum mRNA",
- "Striatum mRNA"
- ]
- ],
- "AIL-LGSM-F34-A": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "AIL-LGSM-F34-F39-43-GBS": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "AIL-LGSM-F34-GBS": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ],
- "AIL-LGSM-F39-43-GBS": [
- [
- "Phenotypes",
- "Phenotypes"
+ "Prefrontal Cortex mRNA",
+ "Prefrontal Cortex mRNA"
]
- ],
+ ]
+ },
+ "mouse": {
"AKXD": [
[
"Genotypes",
@@ -5105,6 +6735,16 @@
"Liver mRNA"
]
],
+ "B6-Lens": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Ocular Lens mRNA",
+ "Ocular Lens mRNA"
+ ]
+ ],
"B6BTBRF2": [
[
"Phenotypes",
@@ -5123,6 +6763,14 @@
[
"Phenotypes",
"Phenotypes"
+ ],
+ [
+ "Retina microRNA",
+ "Retina microRNA"
+ ],
+ [
+ "Retina mRNA",
+ "Retina mRNA"
]
],
"B6D2F2": [
@@ -5143,6 +6791,10 @@
[
"Genotypes",
"Genotypes"
+ ],
+ [
+ "Muscle mRNA",
+ "Muscle mRNA"
]
],
"B6D2RI": [
@@ -5195,6 +6847,10 @@
[
"Liver mRNA",
"Liver mRNA"
+ ],
+ [
+ "Muscle mRNA",
+ "Muscle mRNA"
]
],
"BHHBF2": [
@@ -5285,6 +6941,10 @@
"Hippocampal Precursor Cells mRNA"
],
[
+ "Hippocampus microRNA",
+ "Hippocampus microRNA"
+ ],
+ [
"Hippocampus mRNA",
"Hippocampus mRNA"
],
@@ -5297,6 +6957,14 @@
"Kidney mRNA"
],
[
+ "Leucocytes mRNA",
+ "Leucocytes mRNA"
+ ],
+ [
+ "Liver DNAm",
+ "Liver DNAm"
+ ],
+ [
"Liver Metabolome",
"Liver Metabolome"
],
@@ -5317,6 +6985,10 @@
"Midbrain mRNA"
],
[
+ "Muscle Metabolome",
+ "Muscle Metabolome"
+ ],
+ [
"Muscle mRNA",
"Muscle mRNA"
],
@@ -5325,6 +6997,10 @@
"Neocortex mRNA"
],
[
+ "Neutrophils mRNA",
+ "Neutrophils mRNA"
+ ],
+ [
"Nucleus Accumbens mRNA",
"Nucleus Accumbens mRNA"
],
@@ -5333,6 +7009,10 @@
"Pituitary Gland mRNA"
],
[
+ "Popliteal Lymph Node mRNA",
+ "Popliteal Lymph Node mRNA"
+ ],
+ [
"Prefrontal Cortex mRNA",
"Prefrontal Cortex mRNA"
],
@@ -5357,6 +7037,10 @@
"T Cell (regulatory) mRNA"
],
[
+ "Thymus mRNA",
+ "Thymus mRNA"
+ ],
+ [
"Ventral Tegmental Area mRNA",
"Ventral Tegmental Area mRNA"
]
@@ -5377,12 +7061,20 @@
"Genotypes"
],
[
- "Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Hippocampus Proteome",
+ "Hippocampus Proteome"
+ ],
+ [
+ "Liver DNAm",
+ "Liver DNAm"
],
[
"Liver mRNA",
"Liver mRNA"
+ ],
+ [
+ "Liver Proteome",
+ "Liver Proteome"
]
],
"BXD300": [
@@ -5431,6 +7123,20 @@
"Genotypes"
]
],
+ "CC": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Midbrain mRNA",
+ "Midbrain mRNA"
+ ]
+ ],
"CFW": [
[
"Phenotypes",
@@ -5471,12 +7177,24 @@
[
"Midbrain mRNA",
"Midbrain mRNA"
+ ],
+ [
+ "Prefrontal Cortex mRNA",
+ "Prefrontal Cortex mRNA"
+ ],
+ [
+ "Striatum mRNA",
+ "Striatum mRNA"
]
],
"CMS": [
[
"Phenotypes",
"Phenotypes"
+ ],
+ [
+ "Hippocampus mRNA",
+ "Hippocampus mRNA"
]
],
"CTB6F2": [
@@ -5541,6 +7259,32 @@
"Retina mRNA"
]
],
+ "DOD-BXD-GWI": [
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Prefrontal Cortex mRNA",
+ "Prefrontal Cortex mRNA"
+ ]
+ ],
+ "EMSR": [
+ [
+ "Hippocampus mRNA",
+ "Hippocampus mRNA"
+ ]
+ ],
+ "HET3-ITP": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ],
"HS": [
[
"Phenotypes",
@@ -5565,6 +7309,54 @@
"Striatum mRNA"
]
],
+ "JAX-D2-Mono-RNA-Seq": [
+ [
+ "Retina mRNA",
+ "Retina mRNA"
+ ]
+ ],
+ "LGSM-AI": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Hippocampus mRNA",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Prefrontal Cortex mRNA",
+ "Prefrontal Cortex mRNA"
+ ],
+ [
+ "Striatum mRNA",
+ "Striatum mRNA"
+ ]
+ ],
+ "LGSM-AI-G34-A": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ]
+ ],
+ "LGSM-AI-G34-GBS": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ]
+ ],
+ "LGSM-AI-G34_39-43-GBS": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ]
+ ],
+ "LGSM-AI-G39-43-GBS": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ]
+ ],
"LGSM-AIG34_50-56-GBS": [
[
"Phenotypes",
@@ -5581,6 +7373,10 @@
"Genotypes"
],
[
+ "Brain mRNA",
+ "Brain mRNA"
+ ],
+ [
"Hippocampus mRNA",
"Hippocampus mRNA"
],
@@ -5654,6 +7450,22 @@
"Genotypes",
"Genotypes"
]
+ ],
+ "Scripps-2013": [
+ [
+ "Anterior Cingulate Cortex mRNA",
+ "Anterior Cingulate Cortex mRNA"
+ ]
+ ],
+ "UTHSC-Cannabinoid": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
]
},
"poplar": {
@@ -5665,16 +7477,6 @@
]
},
"rat": {
- "HRDP": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
"HSNIH-Palmer": [
[
"Phenotypes",
@@ -5779,4 +7581,4 @@
]
}
}
-} \ No newline at end of file
+}
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js
index 794804f4..ee7be68c 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js
+++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js
@@ -6,6 +6,7 @@ process_json = function(data) {
return apply_default();
}
};
+
$.ajax('/api/v_pre1/gen_dropdown', {
dataType: 'json',
success: process_json
diff --git a/wqflask/wqflask/templates/show_trait_mapping_tools.html b/wqflask/wqflask/templates/show_trait_mapping_tools.html
index 777d4a2d..777d4a2d 100644..100755
--- a/wqflask/wqflask/templates/show_trait_mapping_tools.html
+++ b/wqflask/wqflask/templates/show_trait_mapping_tools.html
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-25 03:20:44 +0000