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authoruditgulati2020-06-28 11:28:28 -0500
committeruditgulati2020-11-01 05:10:59 -0600
commit73e3f354b0bf6accfd884f0fab8ef93f03be7945 (patch)
treecd5d363c6d55454fc196f8d937d0cb14e6351c67 /wqflask
parent88715630c4d18d962a7473dcac7e34b1b9c098a0 (diff)
downloadgenenetwork2-73e3f354b0bf6accfd884f0fab8ef93f03be7945.tar.gz
fix typo in check_if_in_gene function while querying for species_id = 0
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/snp_browser/snp_browser.py5
1 files changed, 1 insertions, 4 deletions
diff --git a/wqflask/wqflask/snp_browser/snp_browser.py b/wqflask/wqflask/snp_browser/snp_browser.py
index 6c3fcf53..a2fb7195 100644
--- a/wqflask/wqflask/snp_browser/snp_browser.py
+++ b/wqflask/wqflask/snp_browser/snp_browser.py
@@ -526,7 +526,6 @@ class SnpBrowser(object):
the_rows.append(this_row)
return the_rows
-
def include_record(self, domain, function, snp_source, conservation_score):
""" Decide whether to add this record """
@@ -868,8 +867,6 @@ def get_gene_id_name_dict(species_id, gene_name_list):
if len(results) > 0:
for item in results:
gene_id_name_dict[item[1]] = item[0]
- else:
- pass
return gene_id_name_dict
@@ -883,7 +880,7 @@ def check_if_in_gene(species_id, chr, mb):
query = """SELECT geneId,geneSymbol
FROM GeneList
WHERE chromosome = '{0}' AND
- (txStart < {1} AND txEnd > {1}); """.format(species_id, chr, mb)
+ (txStart < {1} AND txEnd > {1}); """.format(chr, mb)
result = g.db.execute(query).fetchone()