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| author | zsloan | 2015-05-19 23:03:28 +0000 |
|---|---|---|
| committer | zsloan | 2015-05-19 23:03:28 +0000 |
| commit | 5580d54847d832887ca2f4def2aed9c7f00efa37 (patch) | |
| tree | 2f793063a950328077c795f12acac8a4c331fc3c /wqflask | |
| parent | 929f12176c4932c9cf370ab397e442e37802fbb9 (diff) | |
| download | genenetwork2-5580d54847d832887ca2f4def2aed9c7f00efa37.tar.gz | |
Fixed an issue causing position search to not work in a combined search.
Diffstat (limited to 'wqflask')
| -rwxr-xr-x | wqflask/wqflask/do_search.py | 16 |
1 files changed, 7 insertions, 9 deletions
diff --git a/wqflask/wqflask/do_search.py b/wqflask/wqflask/do_search.py index 44e2c875..5b042940 100755 --- a/wqflask/wqflask/do_search.py +++ b/wqflask/wqflask/do_search.py @@ -781,6 +781,10 @@ class PositionSearch(DoSearch): DoSearch.search_types[search_key] = "PositionSearch" def get_where_clause(self): + self.search_term = [float(value) if is_number(value) else value for value in self.search_term] + self.chr, self.mb_min, self.mb_max = self.search_term[:3] + self.get_chr() + where_clause = """ %s.Chr = %s and %s.Mb > %s and %s.Mb < %s """ % self.mescape(self.dataset.type, @@ -793,12 +797,6 @@ class PositionSearch(DoSearch): return where_clause - def setup(self): - self.search_term = [float(value) if is_number(value) else value for value in self.search_term] - self.chr, self.mb_min, self.mb_max = self.search_term[:3] - self.get_chr() - self.where_clause = self.get_where_clause() - def get_chr(self): try: self.chr = int(self.chr) @@ -807,7 +805,7 @@ class PositionSearch(DoSearch): def run(self): - self.setup() + self.get_where_clause() self.query = self.compile_final_query(where_clause = self.where_clause) return self.execute(self.query) @@ -820,7 +818,7 @@ class MrnaPositionSearch(PositionSearch, MrnaAssaySearch): def run(self): - self.setup() + self.get_where_clause() self.query = self.compile_final_query(where_clause = self.where_clause) return self.execute(self.query) @@ -833,7 +831,7 @@ class GenotypePositionSearch(PositionSearch, GenotypeSearch): def run(self): - self.setup() + self.get_where_clause() self.query = self.compile_final_query(where_clause = self.where_clause) return self.execute(self.query) |