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authorzsloan2021-01-12 17:51:06 -0600
committerzsloan2021-01-12 17:51:06 -0600
commitb3aba44e452fbfeb9f79c91f94b00061057937a4 (patch)
tree2d488988b02157601a9109ff60bd5139f5c8cc34 /wqflask
parent295805eeb01aceb2651f79662c1462f06e1591cf (diff)
downloadgenenetwork2-b3aba44e452fbfeb9f79c91f94b00061057937a4.tar.gz
Fixed issue causing interval mapping to not be displayed correctly
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/marker_regression/run_mapping.py18
1 files changed, 9 insertions, 9 deletions
diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py
index 891fcc66..38f8c26d 100644
--- a/wqflask/wqflask/marker_regression/run_mapping.py
+++ b/wqflask/wqflask/marker_regression/run_mapping.py
@@ -138,15 +138,15 @@ class RunMapping(object):
mapping_results_filename = self.dataset.group.name + "_" + ''.join(random.choice(string.ascii_uppercase + string.digits) for _ in range(6))
self.mapping_results_path = "{}{}.csv".format(webqtlConfig.GENERATED_IMAGE_DIR, mapping_results_filename)
- if start_vars['manhattan_plot']:
- self.color_scheme = "alternating"
- if "color_scheme" in start_vars:
- self.color_scheme = start_vars['color_scheme']
- if self.color_scheme == "single":
- self.manhattan_single_color = start_vars['manhattan_single_color']
- self.manhattan_plot = True
- else:
- self.manhattan_plot = False
+ self.manhattan_plot = False
+ if 'manhattan_plot' in start_vars:
+ if start_vars['manhattan_plot'].lower() != "false":
+ self.color_scheme = "alternating"
+ if "color_scheme" in start_vars:
+ self.color_scheme = start_vars['color_scheme']
+ if self.color_scheme == "single":
+ self.manhattan_single_color = start_vars['manhattan_single_color']
+ self.manhattan_plot = True
self.maf = start_vars['maf'] # Minor allele frequency
if "use_loco" in start_vars: