aboutsummaryrefslogtreecommitdiff
path: root/wqflask
diff options
context:
space:
mode:
authorzsloan2021-05-27 20:18:36 +0000
committerzsloan2021-05-27 20:18:36 +0000
commit2c2e1dc3d4be635dbf73aab380e22acca6a2014b (patch)
treea3456bdd61648b538ab25f393272bfcb2a3dfc30 /wqflask
parent6a54fa84542458fe8cfd288bf4c507214a1ddd04 (diff)
downloadgenenetwork2-2c2e1dc3d4be635dbf73aab380e22acca6a2014b.tar.gz
Improved test_rqtl_mapping.py with Bonface's recommendation of uses dataclasses
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py23
1 files changed, 10 insertions, 13 deletions
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
index 6853c021..bd97b2d2 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
@@ -2,17 +2,17 @@ import unittest
from unittest import mock
from wqflask.marker_regression.rqtl_mapping import run_rqtl
-class AttributeSetter:
- def __init__(self, obj):
- for key, val in obj.items():
- setattr(self, key, val)
+@dataclass
+class MockGroup:
+ name: str,
+ genofile: str
-class MockGroup(AttributeSetter):
- def get_samplelist(self):
- return None
+@dataclass
+class MockDataset:
+ group: MockGroup
class TestRqtlMapping(unittest.TestCase):
-
+ """Tests for functions in rqtl_mapping.py"""
@mock.patch("wqflask.marker_regression.rqtl_mapping.process_rqtl_results")
@mock.patch("wqflask.marker_regression.rqtl_mapping.process_perm_results")
@mock.patch("wqflask.marker_regression.rqtl_mapping.requests.post")
@@ -22,15 +22,12 @@ class TestRqtlMapping(unittest.TestCase):
"""Test for run_rqtl with permutations > 0"""
dataset_group = MockGroup(
{"name": "GP1", "genofile": "file_geno"})
-
- dataset = AttributeSetter({"group": dataset_group})
+ dataset = MockDataset(dataset_group)
mock_write_pheno_file.return_value = "pheno_filename"
mock_locate.return_value = "geno_filename"
-
mock_post.return_value = {"output_file": "output_filename",
"rqtl_cmd": "the_command"}
-
mock_process_perm.return_value = [[], 3, 4]
mock_process_rqtl.return_value = []
@@ -44,4 +41,4 @@ class TestRqtlMapping(unittest.TestCase):
mock_post.assert_called_once()
mock_process_perm.assert_called_once()
mock_process_rqtl.assert_called_once()
- self.assertEqual(results, ([], 3, 4, [])) \ No newline at end of file
+ self.assertEqual(results, ([], 3, 4, []))