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| author | Frederick Muriuki Muriithi | 2022-09-30 14:25:26 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-09-30 14:25:26 +0300 |
| commit | a9426eaf6e2f4180b8408bd7df06b0435330df12 (patch) | |
| tree | 862066892c2c5a356f0176f894063535d3d83afe /wqflask | |
| parent | 6f1a66b32cca2ac6e3178fde35ff45edace6522d (diff) | |
| download | genenetwork2-a9426eaf6e2f4180b8408bd7df06b0435330df12.tar.gz | |
Remove unused table and simplify query
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/correlation/pre_computes.py | 20 |
1 files changed, 7 insertions, 13 deletions
diff --git a/wqflask/wqflask/correlation/pre_computes.py b/wqflask/wqflask/correlation/pre_computes.py index afcea88f..20fe84e3 100644 --- a/wqflask/wqflask/correlation/pre_computes.py +++ b/wqflask/wqflask/correlation/pre_computes.py @@ -238,19 +238,13 @@ def write_db_to_textfile(db_name, conn, text_dir=TMPDIR): writer.writerows(data.values()) with conn.cursor() as cursor: cursor.execute( - "SELECT ProbeSet.Name,Strain.Name, ProbeSetData.value " - "FROM (ProbeSetData, ProbeSetFreeze, Strain, ProbeSet, " - "ProbeSetXRef) LEFT JOIN ProbeSetSE ON " - "(ProbeSetSE.DataId = ProbeSetData.Id AND " - "ProbeSetSE.StrainId = ProbeSetData.StrainId) " - "LEFT JOIN NStrain ON " - "(NStrain.DataId = ProbeSetData.Id AND " - "NStrain.StrainId = ProbeSetData.StrainId) " - "WHERE ProbeSetXRef.ProbeSetId = ProbeSet.Id " - "AND ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id " - "AND ProbeSetFreeze.Name = %s AND " - "ProbeSetXRef.DataId = ProbeSetData.Id " - "AND ProbeSetData.StrainId = Strain.Id " + "SELECT ProbeSet.Name, Strain.Name, ProbeSetData.value " + "FROM Strain LEFT JOIN ProbeSetData " + "ON Strain.Id = ProbeSetData.StrainId " + "LEFT JOIN ProbeSetXRef ON ProbeSetData.Id = ProbeSetXRef.DataId " + "LEFT JOIN ProbeSet ON ProbeSetXRef.ProbeSetId = ProbeSet.Id " + "WHERE ProbeSetXRef.ProbeSetFreezeId IN " + "(SELECT Id FROM ProbeSetFreeze WHERE Name = %s) " "ORDER BY Strain.Name", (db_name,)) results = cursor.fetchall() |