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author | Pjotr Prins | 2021-12-01 15:55:50 +0000 |
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committer | Pjotr Prins | 2021-12-01 15:55:50 +0000 |
commit | 4bd10c0c4c2eddeb0e75de4da8fcbec222347fdc (patch) | |
tree | 4ccb55655cf508eb89e1146fef66617196f478fb /wqflask | |
parent | d9843928fe5140c953078b5238c2ddb8fb12a96c (diff) | |
download | genenetwork2-4bd10c0c4c2eddeb0e75de4da8fcbec222347fdc.tar.gz |
Figure out that we are using the wrong db_webqtl_s!
Diffstat (limited to 'wqflask')
-rw-r--r-- | wqflask/wqflask/api/gen_menu.py | 12 |
1 files changed, 8 insertions, 4 deletions
diff --git a/wqflask/wqflask/api/gen_menu.py b/wqflask/wqflask/api/gen_menu.py index a699a484..5d239343 100644 --- a/wqflask/wqflask/api/gen_menu.py +++ b/wqflask/wqflask/api/gen_menu.py @@ -1,4 +1,8 @@ from gn3.db.species import get_all_species + +import utility.logger +logger = utility.logger.getLogger(__name__) + def gen_dropdown_json(conn): """Generates and outputs (as json file) the data for the main dropdown menus on the home page @@ -19,16 +23,16 @@ def get_groups(species, conn): with conn.cursor() as cursor: for species_name, _species_full_name in species: groups[species_name] = [] - cursor.execute( - ("SELECT InbredSet.Name, InbredSet.FullName, " + query = ("SELECT InbredSet.Name, InbredSet.FullName, " "IFNULL(InbredSet.Family, 'None') " "FROM InbredSet, Species WHERE Species.Name = '{}' " "AND InbredSet.SpeciesId = Species.Id GROUP by " "InbredSet.Name ORDER BY IFNULL(InbredSet.FamilyOrder, " "InbredSet.FullName) ASC, IFNULL(InbredSet.Family, " "InbredSet.FullName) ASC, InbredSet.FullName ASC, " - "InbredSet.MenuOrderId ASC") - .format(species_name)) + "InbredSet.MenuOrderId ASC").format(species_name) + # logger.debug(query) + cursor.execute(query) results = cursor.fetchall() for result in results: family_name = "Family:" + str(result[2]) |