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authorPjotr Prins2021-12-01 15:55:50 +0000
committerPjotr Prins2021-12-01 15:55:50 +0000
commit4bd10c0c4c2eddeb0e75de4da8fcbec222347fdc (patch)
tree4ccb55655cf508eb89e1146fef66617196f478fb /wqflask
parentd9843928fe5140c953078b5238c2ddb8fb12a96c (diff)
downloadgenenetwork2-4bd10c0c4c2eddeb0e75de4da8fcbec222347fdc.tar.gz
Figure out that we are using the wrong db_webqtl_s!
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/api/gen_menu.py12
1 files changed, 8 insertions, 4 deletions
diff --git a/wqflask/wqflask/api/gen_menu.py b/wqflask/wqflask/api/gen_menu.py
index a699a484..5d239343 100644
--- a/wqflask/wqflask/api/gen_menu.py
+++ b/wqflask/wqflask/api/gen_menu.py
@@ -1,4 +1,8 @@
from gn3.db.species import get_all_species
+
+import utility.logger
+logger = utility.logger.getLogger(__name__)
+
def gen_dropdown_json(conn):
"""Generates and outputs (as json file) the data for the main dropdown menus on
the home page
@@ -19,16 +23,16 @@ def get_groups(species, conn):
with conn.cursor() as cursor:
for species_name, _species_full_name in species:
groups[species_name] = []
- cursor.execute(
- ("SELECT InbredSet.Name, InbredSet.FullName, "
+ query = ("SELECT InbredSet.Name, InbredSet.FullName, "
"IFNULL(InbredSet.Family, 'None') "
"FROM InbredSet, Species WHERE Species.Name = '{}' "
"AND InbredSet.SpeciesId = Species.Id GROUP by "
"InbredSet.Name ORDER BY IFNULL(InbredSet.FamilyOrder, "
"InbredSet.FullName) ASC, IFNULL(InbredSet.Family, "
"InbredSet.FullName) ASC, InbredSet.FullName ASC, "
- "InbredSet.MenuOrderId ASC")
- .format(species_name))
+ "InbredSet.MenuOrderId ASC").format(species_name)
+ # logger.debug(query)
+ cursor.execute(query)
results = cursor.fetchall()
for result in results:
family_name = "Family:" + str(result[2])