diff options
| author | zsloan | 2016-01-27 21:02:03 +0000 |
|---|---|---|
| committer | zsloan | 2016-01-27 21:02:03 +0000 |
| commit | fdc0cdeda64213c82512da20b10264238bd210ea (patch) | |
| tree | af103b937f9003db84b1dd425554b1d20ae15abd /wqflask | |
| parent | 97b83d20a5f6896614024a3cc40535bfb738ef51 (diff) | |
| download | genenetwork2-fdc0cdeda64213c82512da20b10264238bd210ea.tar.gz | |
Added info button to Dataset dropdown on index page
Fixed script that generates dataset dropdown json file to include accession id
Fixed dataset link on search results page
Diffstat (limited to 'wqflask')
5 files changed, 613 insertions, 116 deletions
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py index a2ad8c91..fda46792 100755 --- a/wqflask/maintenance/gen_select_dataset.py +++ b/wqflask/maintenance/gen_select_dataset.py @@ -123,12 +123,12 @@ def get_types(groups): def phenotypes_exist(group_name): - print("group_name:", group_name) + #print("group_name:", group_name) Cursor.execute("""select Name from PublishFreeze where PublishFreeze.Name = %s""", (group_name+"Publish")) results = Cursor.fetchone() - print("RESULTS:", results) + #print("RESULTS:", results) if results != None: return True @@ -136,12 +136,12 @@ def phenotypes_exist(group_name): return False def genotypes_exist(group_name): - print("group_name:", group_name) + #print("group_name:", group_name) Cursor.execute("""select Name from GenoFreeze where GenoFreeze.Name = %s""", (group_name+"Geno")) results = Cursor.fetchone() - print("RESULTS:", results) + #print("RESULTS:", results) if results != None: return True @@ -220,7 +220,7 @@ def build_datasets(species, group, type_name): # and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = # InbredSet.Id and ProbeSetFreeze.public > 0 order by # ProbeSetFreeze.CreateTime desc""".format(species, group, type_name)) - Cursor.execute("""select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from + Cursor.execute("""select ProbeSetFreeze.Id, ProbeSetFreeze.Name, ProbeSetFreeze.FullName from ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue, Species where Species.Name = %s and Species.Id = InbredSet.SpeciesId and InbredSet.Name = %s and @@ -228,7 +228,16 @@ def build_datasets(species, group, type_name): and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and ProbeSetFreeze.public > 0 order by ProbeSetFreeze.CreateTime desc""", (species, group, type_name)) - return Cursor.fetchall() + + dataset_results = Cursor.fetchall() + datasets = [] + for dataset_info in dataset_results: + this_dataset_info = [] + for info in dataset_info: + this_dataset_info.append(str(info)) + datasets.append(this_dataset_info) + + return datasets def main(): diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json index e790c9c0..da9beb9b 100755 --- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json +++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json @@ -58,18 +58,22 @@ "QSM": { "Leaf mRNA": [ [ + "236", "B1LI0809R", "Barley1 Leaf INOC TTKS (Aug09) RMA" ], [ + "235", "B1LI0809M5", "Barley1 Leaf INOC TTKS (Aug09) MAS5" ], [ + "237", "B1MI0809M5", "Barley1 Leaf MOCK TTKS (Aug09) MAS5" ], [ + "238", "B1MI0809R", "Barley1 Leaf MOCK TTKS (Aug09) RMA" ] @@ -78,14 +82,17 @@ "SXM": { "Embryo mRNA": [ [ + "128", "B139_K_1206_R", "Barley1 Embryo gcRMA SCRI (Dec06)" ], [ + "124", "B139_K_1206_M", "Barley1 Embryo MAS 5.0 SCRI (Dec06)" ], [ + "114", "B150_K_0406_R", "Barley1 Embryo0 gcRMA SCRI (Apr06)" ] @@ -98,16 +105,19 @@ ], "Leaf mRNA": [ [ + "127", "B30_K_1206_M", "Barley1 Leaf MAS 5.0 SCRI (Dec06)" ], [ - "B30_K_1206_R", - "Barley1 Leaf gcRMA SCRI (Dec06)" - ], - [ + "126", "B30_K_1206_Rn", "Barley1 Leaf gcRMAn SCRI (Dec06)" + ], + [ + "125", + "B30_K_1206_R", + "Barley1 Leaf gcRMA SCRI (Dec06)" ] ], "Phenotypes": [ @@ -122,6 +132,7 @@ "DGRP": { "Whole Body mRNA": [ [ + "297", "NCSU_DrosWB_LC_RMA_0111", "NCSU Drosophila Whole Body (Jan11) RMA" ] @@ -130,10 +141,12 @@ "Oregon-R_x_2b3": { "Whole Body mRNA": [ [ + "249", "UAB_DrosWB_LC_RMA_1009", "UAB Whole body D.m. mRNA control (Oct09) RMA" ], [ + "250", "UAB_DrosWB_LE_RMA_1009", "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA" ] @@ -144,18 +157,22 @@ "AD-cases-controls": { "Brain mRNA": [ [ + "314", "GSE5281_F_RMA_N_0709", "GSE5281 Human Brain Normal Full Liang (Jul09) RMA" ], [ + "313", "GSE5281_F_RMA_Alzh_0709", "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA" ], [ + "233", "GSE5281_F_RMA0709", "GSE5281 Human Brain Full Liang (Jul09) RMA" ], [ + "232", "GSE5281_RMA0709", "GSE5281 Human Brain Best 102 Liang (Jul09) RMA" ] @@ -164,14 +181,17 @@ "AD-cases-controls-Myers": { "Brain mRNA": [ [ + "234", "GSE15222_F_RI_0409", "GSE15222 Human Brain All Cases Myers (Apr09) RankInv" ], [ + "290", "GSE15222_F_N_RI_0409", "GSE15222 Human Brain Normal Myers (Apr09) RankInv" ], [ + "289", "GSE15222_F_A_RI_0409", "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv" ] @@ -186,24 +206,28 @@ "Aging-Brain-UCI": { "Entorhinal Cortex mRNA": [ [ + "460", "UCI_EC_0913", "GSE11882 UCI Human Entorhinal Cortex Affy U133 Plus2 (Sep13) RMA" ] ], "Hippocampus mRNA": [ [ + "461", "UCI_HC_0913", "GSE11882 UCI Human Hippocampus Affy U133 Plus2 (Sep13) RMA" ] ], "Postcentral Gyrus mRNA": [ [ + "462", "UCI_PCG_0913", "GSE11882 UCI Human Postcentral Gyrus Affy U133 Plus2 (Sep13) RMA" ] ], "Superior Frontal Gyrus mRNA": [ [ + "463", "UCI_SG_0913", "GSE11882 UCI Human Superior Frontal Gyrus Affy U133 Plus2 (Sep13) RMA" ] @@ -212,24 +236,28 @@ "Brain-Normal-NIH-Gibbs": { "Cerebellum mRNA": [ [ + "481", "GSE15745-GPL6104_Cer0510", "GSE15745 NIH Human Brain Cerebellum ILM humanRef-8 v2.0 (May10) RankInv" ] ], "Pons mRNA": [ [ + "484", "GSE15745-GPL6104_Po0510", "GSE15745 NIH Human Brain Pons ILM humanRef-8 v2.0 (May10) RankInv" ] ], "Prefrontal Cortex mRNA": [ [ + "482", "GSE15745-GPL6104_PFC0510", "GSE15745 NIH Human Brain Prefrontal Cortex ILM humanRef-8 v2.0 (May10) RankInv" ] ], "Temporal Cerebral Wall mRNA": [ [ + "483", "GSE15745-GPL6104_TC0510", "GSE15745 NIH Human Brain Temporal Cerebral ILM humanRef-8 v2.0 (May10) RankInv" ] @@ -238,16 +266,19 @@ "CANDLE": { "Methylation": [ [ + "423", "CANDLE_Meth27_0313", "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13) **" ], [ + "422", "CANDLE_Meth_0313", "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13) Z-Score **" ] ], "Newborn Cord Blood mRNA": [ [ + "324", "CANDLE_NB_0711", "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT" ] @@ -262,10 +293,12 @@ "CEPH-2004": { "Lymphoblast B-cell mRNA": [ [ + "241", "UT_CEPH_RankInv0909", "UTHSC CEPH B-cells Illumina (Sep09) RankInv" ], [ + "215", "Human_1008", "Monks CEPH B-cells Agilent (Dec04) Log10Ratio" ] @@ -274,470 +307,564 @@ "GTEx": { "Adrenal Gland mRNA": [ [ + "545", "GTEx_log2_Adren_0314", "GTEx Human Adrenal Gland (Mar14) RPKM Log2" ], [ + "495", "GTEx_Adren_0414", "GTEx Human Adrenal Gland (Apr14) RPKM" ] ], "Amygdala mRNA": [ [ + "542", "GTEx_log2_AMY_0314", "GTEx Human Amygdala (Mar14) RPKM Log2" ], [ + "492", "GTEx_AMY_0314", "GTEx Human Amygdala (Mar14) RPKM" ] ], "Anterior Cingulate Cortex mRNA": [ [ + "546", "GTEx_log2_Anter_0314", "GTEx Human Anterior Cingulate Cortex (Mar14) RPKM Log2" ], [ + "496", "GTEx_Anter_0414", "GTEx Human Anterior Cingulate Cortex (Apr14) RPKM" ] ], "Aorta mRNA": [ [ + "547", "GTEx_log2_Aorta_0314", "GTEx Human Aorta (Mar14) RPKM Log2" ], [ + "497", "GTEx_Aorta_0414", "GTEx Human Aorta (Apr14) RPKM" ] ], "Blood, Cells - EBV-Transformed Lymphocytes mRNA": [ [ + "548", "GTEx_log2_Blood_0314", "GTEx Human Blood, Cells - EBV-Transformed Lymphocytes (Mar14) RPKM Log2" ], [ + "498", "GTEx_Blood_0414", "GTEx Human Blood, Cells - EBV-Transformed Lymphocytes (Apr14) RPKM" ] ], "Breast - Mammary Tissue mRNA": [ [ + "549", "GTEx_log2_Breas_0314", "GTEx Human Breast - Mammary Tissue (Mar14) RPKM Log2" ], [ + "499", "GTEx_Breas_0414", "GTEx Human Breast - Mammary Tissue (Apr14) RPKM" ] ], "Caudate mRNA": [ [ + "550", "GTEx_log2_Cauda_0314", "GTEx Human Caudate (Mar14) RPKM Log2" ], [ + "500", "GTEx_Cauda_0414", "GTEx Human Caudate (Apr14) RPKM" ] ], "Cells - EBV-Transformed Lymphocytes mRNA": [ [ + "551", "GTEx_log2_CellsEBV_0314", "GTEx Human Cells - EBV-Transformed Lymphocytes (Mar14) RPKM Log2" ], [ + "501", "GTEx_CellsEBV_0414", "GTEx Human Cells - EBV-Transformed Lymphocytes (Apr14) RPKM" ] ], "Cells - Leukemia Cell Line (CML) mRNA": [ [ + "552", "GTEx_log2_CellsLe_0314", "GTEx Human Cells - Leukemia Cell Line (CML) (Mar14) RPKM Log2" ], [ + "502", "GTEx_CellsLe_0414", "GTEx Human Cells - Leukemia Cell Line (CML) (Apr14) RPKM" ] ], "Cells - Transformed Fibroblasts mRNA": [ [ + "553", "GTEx_log2_CellsTr_0314", "GTEx Human Cells - Transformed Fibroblasts (Mar14) RPKM Log2" ], [ + "503", "GTEx_CellsTr_0414", "GTEx Human Cells - Transformed Fibroblasts (Apr14) RPKM" ] ], "Cerebellar Cortex mRNA": [ [ + "554", "GTEx_log2_CerebC_0314", "GTEx Human Cerebellar Cortex (Mar14) RPKM Log2" ], [ + "504", "GTEx_CerebC_0414", "GTEx Human Cerebellar Cortex (Apr14) RPKM" ] ], "Cerebellar Hemisphere mRNA": [ [ + "555", "GTEx_log2_CerebH_0314", "GTEx Human Cerebellar Hemisphere (Mar14) RPKM Log2" ], [ + "505", "GTEx_CerebH_0414", "GTEx Human Cerebellar Hemisphere (Apr14) RPKM" ] ], "Cerebellum mRNA": [ [ + "543", "GTEx_log2_CER_0314", "GTEx Human Cerebellum (Mar14) RPKM Log2" ], [ + "493", "GTEx_CER_0314", "GTEx Human Cerebellum (Mar14) RPKM" ] ], "Colon - Transverse mRNA": [ [ + "556", "GTEx_log2_Colon_0314", "GTEx Human Colon - Transverse (Mar14) RPKM Log2" ], [ + "506", "GTEx_Colon_0414", "GTEx Human Colon - Transverse (Apr14) RPKM" ] ], "Coronary mRNA": [ [ + "557", "GTEx_log2_Coron_0314", "GTEx Human Coronary (Mar14) RPKM Log2" ], [ + "507", "GTEx_Coron_0414", "GTEx Human Coronary (Apr14) RPKM" ] ], "Esophagus - Mucosa mRNA": [ [ + "558", "GTEx_log2_EsophMuc_0314", "GTEx Human Esophagus - Mucosa (Mar14) RPKM Log2" ], [ + "508", "GTEx_EsophMuc_0414", "GTEx Human Esophagus - Mucosa (Apr14) RPKM" ] ], "Esophagus - Muscularis mRNA": [ [ + "559", "GTEx_log2_EsophMus_0314", "GTEx Human Esophagus - Muscularis (Mar14) RPKM Log2" ], [ + "509", "GTEx_EsophMus_0414", "GTEx Human Esophagus - Muscularis (Apr14) RPKM" ] ], "Fallopian Tube mRNA": [ [ + "560", "GTEx_log2_Fallo_0314", "GTEx Human Fallopian Tube (Mar14) RPKM Log2" ], [ + "510", "GTEx_Fallo_0414", "GTEx Human Fallopian Tube (Apr14) RPKM" ] ], "Frontal Cortex mRNA": [ [ + "561", "GTEx_log2_Front_0314", "GTEx Human Frontal Cortex (Mar14) RPKM Log2" ], [ + "511", "GTEx_Front_0414", "GTEx Human Frontal Cortex (Apr14) RPKM" ] ], "Heart - Atrial Appendage mRNA": [ [ + "562", "GTEx_log2_HeartAt_0314", "GTEx Human Heart - Atrial Appendage (Mar14) RPKM Log2" ], [ + "512", "GTEx_HeartAt_0414", "GTEx Human Heart - Atrial Appendage (Apr14) RPKM" ] ], "Heart - Left Ventricle mRNA": [ [ + "563", "GTEx_log2_HeartLV_0314", "GTEx Human Heart - Left Ventricle (Mar14) RPKM Log2" ], [ + "513", "GTEx_HeartLV_0414", "GTEx Human Heart - Left Ventricle (Apr14) RPKM" ] ], "Hippocampus mRNA": [ [ + "544", "GTEx_log2_HIP_0314", "GTEx Human Hippocampus (Mar14) RPKM Log2" ], [ + "494", "GTEx_HIP_0314", "GTEx Human Hippocampus (Mar14) RPKM" ] ], "Hypothalamus mRNA": [ [ + "564", "GTEx_log2_Hypot_0314", "GTEx Human Hypothalamus (Mar14) RPKM Log2" ], [ + "514", "GTEx_Hypot_0414", "GTEx Human Hypothalamus (Apr14) RPKM" ] ], "Kidney mRNA": [ [ + "565", "GTEx_log2_Kidne_0314", "GTEx Human Kidney (Mar14) RPKM Log2" ], [ + "515", "GTEx_Kidne_0414", "GTEx Human Kidney (Apr14) RPKM" ] ], "Liver mRNA": [ [ + "566", "GTEx_log2_Liver_0314", "GTEx Human Liver (Mar14) RPKM Log2" ], [ + "516", "GTEx_Liver_0414", "GTEx Human Liver (Apr14) RPKM" ] ], "Lung mRNA": [ [ + "567", "GTEx_log2_Lung_0314", "GTEx Human Lung (Mar14) RPKM Log2" ], [ + "517", "GTEx_Lung _0414", "GTEx Human Lung (Apr14) RPKM" ] ], "Muscle mRNA": [ [ + "568", "GTEx_log2_Muscle_0314", "GTEx Human Muscle (Mar14) RPKM Log2" ], [ + "518", "GTEx_Muscl_0414", "GTEx Human Muscle (Apr14) RPKM" ] ], "Nerve - Tibial mRNA": [ [ + "569", "GTEx_log2_Nerve_0314", "GTEx Human Nerve - Tibial (Mar14) RPKM Log2" ], [ + "519", "GTEx_Nerve_0414", "GTEx Human Nerve - Tibial (Apr14) RPKM" ] ], "Nucleus Accumbens mRNA": [ [ + "570", "GTEx_log2_Nucle_0314", "GTEx Human Nucleus Accumbens (Mar14) RPKM Log2" ], [ + "520", "GTEx_Nucle_0414", "GTEx Human Nucleus Accumbens (Apr14) RPKM" ] ], "Ovary mRNA": [ [ + "571", "GTEx_log2_Ovary_0314", "GTEx Human Ovary (Mar14) RPKM Log2" ], [ + "521", "GTEx_Ovary_0414", "GTEx Human Ovary (Apr14) RPKM" ] ], "Pancreas mRNA": [ [ + "572", "GTEx_log2_Pancr_0314", "GTEx Human Pancreas (Mar14) RPKM Log2" ], [ + "522", "GTEx_Pancr_0414", "GTEx Human Pancreas (Apr14) RPKM" ] ], "Pituitary Gland mRNA": [ [ + "573", "GTEx_log2_Pitui_0314", "GTEx Human Pituitary (Mar14) RPKM Log2" ], [ + "523", "GTEx_Pitui_0414", "GTEx Human Pituitary (Apr14) RPKM" ] ], "Prostate mRNA": [ [ + "574", "GTEx_log2_Prost_0314", "GTEx Human Prostate (Mar14) RPKM Log2" ], [ + "524", "GTEx_Prost_0414", "GTEx Human Prostate (Apr14) RPKM" ] ], "Putamen mRNA": [ [ + "575", "GTEx_log2_Putam_0314", "GTEx Human Putamen (Mar14) RPKM Log2" ], [ + "525", "GTEx_Putam_0414", "GTEx Human Putamen (Apr14) RPKM" ] ], "Skin - Not Sun Exposed (Suprapubic) mRNA": [ [ + "576", "GTEx_log2_SkinN_0314", "GTEx Human Skin-Not Sun Exposed (Suprapubic) (Mar14) RPKM Log2" ], [ + "526", "GTEx_SkinN_0414", "GTEx Human Skin-Not Sun Exposed (Suprapubic) (Apr14) RPKM" ] ], "Skin - Sun Exposed (Lower leg) mRNA": [ [ + "577", "GTEx_log2_SkinE_0314", "GTEx Human Skin-Sun Exposed (Lower leg) (Mar14) RPKM Log2" ], [ + "527", "GTEx_SkinE_0414", "GTEx Human Skin-Sun Exposed (Lower leg) (Apr14) RPKM" ] ], "Spinal Cord mRNA": [ [ + "578", "GTEx_log2_Spina_0314", "GTEx Human Spinal Cord (Mar14) RPKM Log2" ], [ + "528", "GTEx_Spina_0414", "GTEx Human Spinal Cord (Apr14) RPKM" ] ], "Stomach mRNA": [ [ + "579", "GTEx_log2_Stoma_0314", "GTEx Human Stomach (Mar14) RPKM Log2" ], [ + "529", "GTEx_Stoma_0414", "GTEx Human Stomach (Apr14) RPKM" ] ], "Subcutaneous mRNA": [ [ + "580", "GTEx_log2_Subcu_0314", "GTEx Human Subcutaneous (Mar14) RPKM Log2" ], [ + "530", "GTEx_Subcu_0414", "GTEx Human Subcutaneous (Apr14) RPKM" ] ], "Substantia Nigra mRNA": [ [ + "581", "GTEx_log2_Subst_0314", "GTEx Human Substantia Nigra (Mar14) RPKM Log2" ], [ + "531", "GTEx_Subst_0414", "GTEx Human Substantia Nigra (Apr14) RPKM" ] ], "Testis mRNA": [ [ + "582", "GTEx_log2_Testi_0314", "GTEx Human Testis (Mar14) RPKM Log2" ], [ + "532", "GTEx_Testi_0414", "GTEx Human Testis (Apr14) RPKM" ] ], "Thyroid mRNA": [ [ + "583", "GTEx_log2_Thyro_0314", "GTEx Human Thyroid (Mar14) RPKM Log2" ], [ + "533", "GTEx_Thyro_0414", "GTEx Human Thyroid (Apr14) RPKM" ] ], "Tibial mRNA": [ [ + "584", "GTEx_log2_Tibial_0314", "GTEx Human Tibial (Mar14) RPKM Log2" ], [ + "534", "GTEx_Tibia_0414", "GTEx Human Tibial (Apr14) RPKM" ] ], "Uterus mRNA": [ [ + "585", "GTEx_log2_Uterus_0314", "GTEx Human Uterus (Mar14) RPKM Log2" ], [ + "535", "GTEx_Uteru_0414", "GTEx Human Uterus (Apr14) RPKM" ] ], "Vagina mRNA": [ [ + "586", "GTEx_log2_Vagin_0314", "GTEx Human Vagina (Mar14) RPKM Log2" ], [ + "536", "GTEx_Vagin_0414", "GTEx Human Vagina (Apr14) RPKM" ] ], "Visceral mRNA": [ [ + "587", "GTEx_log2_Visce_0314", "GTEx Human Visceral (Mar14) RPKM Log2" ], [ + "537", "GTEx_Visce_0414", "GTEx Human Visceral (Apr14) RPKM" ] ], "Whole Blood mRNA": [ [ + "588", "GTEx_log2_WholeB_0314", "GTEx Human Whole Blood (Mar14) RPKM Log2" ], [ + "538", "GTEx_Whole_0414", "GTEx Human Whole Blood (Apr14) RPKM" ] @@ -746,54 +873,66 @@ "HB": { "Cerebellum mRNA": [ [ + "326", "HBTRC-MLC_0611", "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio" ], [ + "361", "HBTRC-MLC_N_0611", "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio" ], [ + "362", "HBTRC-MLC_AD_0611", "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio" ], [ + "363", "HBTRC-MLC_HD_0611", "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio" ] ], "Prefrontal Cortex mRNA": [ [ + "328", "HBTRC-MLPFC_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio" ], [ + "367", "HBTRC-MLPFC_N_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio" ], [ + "368", "HBTRC-MLPFC_AD_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio" ], [ + "369", "HBTRC-MLPFC_HD_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio" ] ], "Primary Visual Cortex mRNA": [ [ + "327", "HBTRC-MLVC_0611", "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio" ], [ + "364", "HBTRC-MLVC_N_0611", "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio" ], [ + "365", "HBTRC-MLVC_AD_0611", "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio" ], [ + "366", "HBTRC-MLVC_HD_0611", "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio" ] @@ -810,14 +949,17 @@ "HLC": { "Liver mRNA": [ [ + "320", "HLC_0311", "GSE9588 Human Liver Normal (Mar11) Both Sexes" ], [ + "383", "HLCM_0311", "GSE9588 Human Liver Normal (Mar11) Males" ], [ + "384", "HLCF_0311", "GSE9588 Human Liver Normal (Mar11) Females" ] @@ -832,18 +974,22 @@ "HLT": { "Lung mRNA": [ [ + "455", "GSE23546HLT0613", "Super Series GSE23546 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA" ], [ + "452", "luCA_GSE23352HLT0613", "UL/GSE23352 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA (Jun11) RMA" ], [ + "453", "UBC-GSE23529HLT0613", "UBC/GSE23529 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA" ], [ + "454", "GRNG-GSE23545HLT0613", "GRNG/GSE23545 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA" ] @@ -852,96 +998,112 @@ "HSB": { "Amygdala mRNA": [ [ + "330", "KIN_YSM_AMY_0711", "GN330 Human Amygdala Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Cerebellar Cortex mRNA": [ [ + "331", "KIN_YSM_CBC_0711", "Human Cerebellar Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Dorsolateral Prefrontal Cortex mRNA": [ [ + "333", "KIN_YSM_DFC_0711", "Human Dorsolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Hippocampus mRNA": [ [ + "337", "KIN_YSM_HIP_0711", "Human Hippocampus Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Inferior Temporal Cortex mRNA": [ [ + "339", "KIN_YSM_ITC_0711", "Human Inferior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Medial Prefrontal Cortex mRNA": [ [ + "343", "KIN_YSM_MFC_0711", "Human Medial Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Mediodorsal Nucleus of Thalamus mRNA": [ [ + "342", "KIN_YSM_MD_0711", "Human Mediodorsal Nucleus of Thalamus Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Orbital Prefrontal Cortex mRNA": [ [ + "347", "KIN_YSM_OFC_0711", "Human Orbital Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Posterior Inferior Parietal Cortex mRNA": [ [ + "338", "KIN_YSM_IPC_0711", "Human Posterior Inferior Parietal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Posterior Superior Temporal Cortex mRNA": [ [ + "350", "KIN_YSM_STC_0711", "Human Posterior Superior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Auditory (A1) Cortex mRNA": [ [ + "329", "KIN_YSM_A1C_0711", "Human Primary Auditory (A1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Motor (M1) Cortex mRNA": [ [ + "341", "KIN_YSM_M1C_0711", "Human Primary Motor (M1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Somatosensory (S1) Cortex mRNA": [ [ + "349", "KIN_YSM_S1C_0711", "Human Primary Somatosensory (S1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Visual Cortex mRNA": [ [ + "354", "KIN_YSM_V1C_0711", "Human Primary Visual Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Striatum mRNA": [ [ + "351", "KIN_YSM_STR_0711", "Human Striatum Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Ventrolateral Prefrontal Cortex mRNA": [ [ + "356", "KIN_YSM_VFC_0711", "Human Ventrolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] @@ -952,30 +1114,35 @@ "Macaca-fasicularis": { "Amygdala mRNA": [ [ + "255", "INIA_MacFas_AMG_RMA_0110", "INIA Macaca fasicularis Amygdala (Jan10) RMA **" ] ], "Brain mRNA": [ [ + "251", "INIA_MacFas_brain_RMA_0110", "INIA Macaca fasicularis Brain (Jan10) RMA **" ] ], "Hippocampus mRNA": [ [ + "254", "INIA_MacFas_Hc_RMA_0110", "INIA Macaca fasicularis Hippocampus (Jan10) RMA **" ] ], "Nucleus Accumbens mRNA": [ [ + "253", "INIA_MacFas_Ac_RMA_0110", "INIA Macaca fasicularis Nucleus Accumbens (Jan10) RMA **" ] ], "Prefrontal Cortex mRNA": [ [ + "252", "INIA_MacFas_Pf_RMA_0110", "INIA Macaca fasicularis Prefrontal Cortex (Jan10) RMA **" ] @@ -992,28 +1159,33 @@ ], "Mammary Tumors mRNA": [ [ + "224", "NCI_Agil_Mam_Tum_RMA_0409", "NCI Mammary LMT miRNA v2 (Apr09) RMA" ], [ - "MA_M_0704_M", - "NCI Mammary mRNA M430 (July04) MAS5" - ], - [ + "37", "MA_M_0704_R", "NCI Mammary mRNA M430 (July04) RMA" + ], + [ + "36", + "MA_M_0704_M", + "NCI Mammary mRNA M430 (July04) MAS5" ] ] }, "AXBXA": { "Bone Femur mRNA": [ [ + "411", "UCLA_AXB/BXA_Femur_0113_RSN", "UCLA GSE27483 AXB/BXA Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ] ], "Eye mRNA": [ [ + "210", "Eye_AXBXA_1008_RankInv", "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta" ] @@ -1026,12 +1198,14 @@ ], "Heart mRNA": [ [ + "421", "IRCM_AXBXA_HRI0213", "IRCM AXB/BXA Mouse Heart ILM MouseRef-8 v2.0 (Feb13) RankInv" ] ], "Liver mRNA": [ [ + "352", "GSE16780AB_UCLA_ML0911", "GSE16780 UCLA Mouse AXB/BXA Liver Affy HT M430A (Sep11) RMA" ] @@ -1052,12 +1226,14 @@ ], "Liver mRNA": [ [ - "LVF2_M_0704_M", - "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5" - ], - [ + "39", "LVF2_M_0704_R", "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA" + ], + [ + "38", + "LVF2_M_0704_M", + "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5" ] ], "Phenotypes": [ @@ -1070,28 +1246,34 @@ "B6D2F2": { "Brain mRNA": [ [ + "76", + "BRF2_M_0805_M", + "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5" + ], + [ + "78", "BRF2_M_0805_P", "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN" ], [ + "77", "BRF2_M_0805_R", "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA" ], [ - "BRF2_M_0805_M", - "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5" - ], - [ + "33", "BRF2_M_0304_P", "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN" ], [ - "BRF2_M_0304_M", - "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5" - ], - [ + "32", "BRF2_M_0304_R", "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA" + ], + [ + "31", + "BRF2_M_0304_M", + "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5" ] ], "Genotypes": [ @@ -1110,18 +1292,22 @@ ], "Muscle mRNA": [ [ + "134", "PSU-B6D2F2_0812", "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA **" ], [ + "404", "PSU-B6D2F2_F0812", "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Females **" ], [ + "405", "PSU-B6D2F2_M0812", "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males **" ], [ + "406", "PSU-B6D2F2_M2000812", "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males Aged 200 **" ] @@ -1130,6 +1316,7 @@ "B6D2RI": { "Hippocampus mRNA": [ [ + "391", "UTHSC_B6D2RI_H_0912", "UTHSC B6D2RI Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA **" ] @@ -1144,6 +1331,7 @@ ], "Liver mRNA": [ [ + "169", "UCLA_BDF2_LIVER_1999", "UCLA BDF2 Liver (1999) mlratio" ] @@ -1158,44 +1346,53 @@ ], "Striatum mRNA": [ [ + "84", + "SA_M2_0905_R", + "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA" + ], + [ + "83", "SA_M2_0905_M", "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5" ], [ + "85", "SA_M2_0905_P", "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN" - ], - [ - "SA_M2_0905_R", - "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA" ] ] }, "BHF2": { "Adipose mRNA": [ [ - "UCLA_BHF2_ADIPOSE_FEMALE", - "UCLA BHF2 Adipose Female mlratio" - ], - [ + "196", "UCLA_BHF2_ADIPOSE_MALE", "UCLA BHF2 Adipose Male mlratio" ], [ + "197", + "UCLA_BHF2_ADIPOSE_FEMALE", + "UCLA BHF2 Adipose Female mlratio" + ], + [ + "165", "UCLA_BHF2_ADIPOSE_0605", "UCLA BHF2 Adipose (June05) mlratio" ] ], "Brain mRNA": [ [ - "UCLA_BHF2_BRAIN_FEMALE", - "UCLA BHF2 Brain Female mlratio" - ], - [ + "198", "UCLA_BHF2_BRAIN_MALE", "UCLA BHF2 Brain Male mlratio" ], [ + "199", + "UCLA_BHF2_BRAIN_FEMALE", + "UCLA BHF2 Brain Female mlratio" + ], + [ + "166", "UCLA_BHF2_BRAIN_0605", "UCLA BHF2 Brain (June05) mlratio" ] @@ -1208,28 +1405,34 @@ ], "Liver mRNA": [ [ - "UCLA_BHF2_LIVER_FEMALE", - "UCLA BHF2 Liver Female mlratio" - ], - [ + "200", "UCLA_BHF2_LIVER_MALE", "UCLA BHF2 Liver Male mlratio" ], [ + "201", + "UCLA_BHF2_LIVER_FEMALE", + "UCLA BHF2 Liver Female mlratio" + ], + [ + "167", "UCLA_BHF2_LIVER_0605", "UCLA BHF2 Liver (June05) mlratio" ] ], "Muscle mRNA": [ [ - "UCLA_BHF2_MUSCLE_FEMALE", - "UCLA BHF2 Muscle Female mlratio **" - ], - [ + "202", "UCLA_BHF2_MUSCLE_MALE", "UCLA BHF2 Muscle Male mlratio **" ], [ + "203", + "UCLA_BHF2_MUSCLE_FEMALE", + "UCLA BHF2 Muscle Female mlratio **" + ], + [ + "168", "UCLA_BHF2_MUSCLE_0605", "UCLA BHF2 Muscle (June05) mlratio **" ] @@ -1238,28 +1441,34 @@ "BHHBF2": { "Adipose mRNA": [ [ + "174", "UCLA_BHHBF2_ADIPOSE_2005", "UCLA BHHBF2 Adipose (2005) mlratio" ], [ + "180", "UCLA_BHHBF2_ADIPOSE_MALE", "UCLA BHHBF2 Adipose Male Only" ], [ + "181", "UCLA_BHHBF2_ADIPOSE_FEMALE", "UCLA BHHBF2 Adipose Female Only" ] ], "Brain mRNA": [ [ + "175", "UCLA_BHHBF2_BRAIN_2005", "UCLA BHHBF2 Brain (2005) mlratio" ], [ + "182", "UCLA_BHHBF2_BRAIN_MALE", "UCLA BHHBF2 Brain Male Only" ], [ + "183", "UCLA_BHHBF2_BRAIN_FEMALE", "UCLA BHHBF2 Brain Female Only" ] @@ -1272,28 +1481,34 @@ ], "Liver mRNA": [ [ + "176", "UCLA_BHHBF2_LIVER_2005", "UCLA BHHBF2 Liver (2005) mlratio" ], [ + "184", "UCLA_BHHBF2_LIVER_MALE", "UCLA BHHBF2 Liver Male Only" ], [ + "185", "UCLA_BHHBF2_LIVER_FEMALE", "UCLA BHHBF2 Liver Female Only" ] ], "Muscle mRNA": [ [ + "177", "UCLA_BHHBF2_MUSCLE_2005", "UCLA BHHBF2 Muscle (2005) mlratio" ], [ + "186", "UCLA_BHHBF2_MUSCLE_MALE", "UCLA BHHBF2 Muscle Male Only" ], [ + "187", "UCLA_BHHBF2_MUSCLE_FEMALE", "UCLA BHHBF2 Muscle Female Only" ] @@ -1302,250 +1517,308 @@ "BXD": { "Adipose mRNA": [ [ + "469", "EPFLADGL1013", "EPFL/LISP BXD CD Brown Adipose Affy Mouse Gene 2.0 ST Gene Level (Oct13) RMA" ], [ + "470", "EPFLADEL1013", "EPFL/LISP BXD CD Brown Adipose Affy Mouse Gene 2.0 ST Exon Level (Oct13) RMA" ] ], "Adrenal Gland mRNA": [ [ + "388", "INIA_Adrenal_RMA_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA" ], [ + "426", "INIA_Adrenal_RMA_F_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Females" ], [ + "425", "INIA_Adrenal_RMA_M_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Males" ], [ + "334", "INIA_Adrenal_RMA_Ex_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Exon Level" ] ], "Amygdala mRNA": [ [ + "323", "INIA_AmgCoh_0311", "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA" ], [ + "280", "INIA_Amg_BLA_RMA_1110", "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA" ], [ + "316", "INIA_Amg_BLA_RMA_M_1110", "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male" ], [ + "315", "INIA_Amg_BLA_RMA_F_1110", "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female" ], [ + "158", "INIA_Amg_BLA_Ex-RMA_1110", "INIA Amygdala Exon Affy MoGene 1.0 ST (Nov10) RMA" ] ], "Bone Femur mRNA": [ [ + "410", "UCLA_BXD_Femur_0113_RSN", "UCLA GSE27483 BXD Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ], [ + "414", "UCLA_BXD-on_Femur_0113_RSN", "UCLA GSE27483 BXD Only Bone Femur ILM Mouse WG-6 v2.0 (Jan13) RSN" ], [ + "464", "UTHSCWGU88BFMG1013", "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA **" ], [ + "465", "UTHSCWGU88BFMEx1013", "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA **" ], [ + "466", "UTHSCWGU88BFFG1013", "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA **" ], [ + "467", "UTHSCWGU88BFFEx1013", "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA **" ] ], "Brain mRNA": [ [ + "589", "UTHSC_BXD_WB_RNASeqtrim1112", "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Trimmed 2.0" ], [ - "UTHSC_BXD_WB_RNASeqtrim1_1112", - "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Trimmed 1.0" - ], - [ + "164", "UTHSC_BXD_WB_RNASeq1112", "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Untrimmed" ], [ + "590", + "UTHSC_BXD_WB_RNASeqtrim1_1112", + "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Trimmed 1.0" + ], + [ + "394", "UTHSC_BXD_WB_RNASeqEx1112", "UTHSC Mouse BXD Whole Brain RNA Sequence Exon Level (Nov12) RPKM" ], [ + "123", "BR_M2_1106_R", "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA" ], [ + "95", "BR_U_1105_P", "UTHSC Brain mRNA U74Av2 (Nov05) PDNN" ], [ - "BR_U_0805_P", - "UTHSC Brain mRNA U74Av2 (Aug05) PDNN" - ], - [ + "80", "BR_U_0805_M", "UTHSC Brain mRNA U74Av2 (Aug05) MAS5" ], [ + "82", "BR_U_0805_R", "UTHSC Brain mRNA U74Av2 (Aug05) RMA" ], [ + "81", + "BR_U_0805_P", + "UTHSC Brain mRNA U74Av2 (Aug05) PDNN" + ], + [ + "42", "CB_M_0204_P", "INIA Brain mRNA M430 (Feb04) PDNN" ] ], "Cartilage mRNA": [ [ + "208", "UCLA_BXDBXH_CARTILAGE_V2", "UCLA BXD and BXH Cartilage v2" ], [ + "204", "UCLA_BXDBXH_CARTILAGE", "UCLA BXD and BXH Cartilage" ], [ + "178", "UCLA_BXD_CARTILAGE", "UCLA BXD Cartilage" ] ], "Cerebellum mRNA": [ [ + "46", "CB_M_1004_R", "SJUT Cerebellum mRNA M430 (Oct04) RMA" ], [ + "45", "CB_M_1004_P", "SJUT Cerebellum mRNA M430 (Oct04) PDNN" ], [ + "44", "CB_M_1004_M", "SJUT Cerebellum mRNA M430 (Oct04) MAS5" ], [ + "9", "CB_M_1003_M", "SJUT Cerebellum mRNA M430 (Oct03) MAS5" ], [ + "436", "CMMTUBCBXDCerILM0513", "UBC/CMMT BXD Cerebellum All Ages Combined ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "441", "CMMTUBCBXDG12CerILM0513", "UBC/CMMT BXD E12 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "442", "CMMTUBCBXDG15CerILM0513", "UBC/CMMT BXD E15 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "443", "CMMTUBCBXDG18CerILM0513", "UBC/CMMT BXD E18 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "437", "CMMTUBCBXDP00CerILM0513", "UBC/CMMT BXD P0 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "438", "CMMTUBCBXDP03CerILM0513", "UBC/CMMT BXD P3 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "439", "CMMTUBCBXDP06CerILM0513", "UBC/CMMT BXD P6 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "440", "CMMTUBCBXDP09CerILM0513", "UBC/CMMT BXD P9 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "415", "GenEx_BXD_CerebEt_RMA_0213", "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes **" ], [ + "416", "GenEx_BXD_CerebEt_RMA_F_0213", "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Females **" ], [ + "417", "GenEx_BXD_CerebEt_RMA_M_0213", "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Males **" ], [ + "418", "GenEx_BXD_CerebSal_RMA_0213", "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes **" ], [ + "419", "GenEx_BXD_CerebSal_RMA_F_0213", "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Females **" ], [ + "420", "GenEx_BXD_CerebSal_RMA_M_0213", "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Males **" ] ], "Eye mRNA": [ [ + "207", "Eye_M2_0908_R", "Eye M430v2 (Sep08) RMA" ], [ + "10", "gn10", "Eye M430v2 No Mutant/Mutant (Aug12) RMA **" ], [ + "261", "Eye_M2_0908_R_NB", "Eye M430v2 Mutant Gpnmb (Sep08) RMA **" ], [ + "262", "Eye_M2_0908_R_ND", "Eye M430v2 WT Gpnmb (Sep08) RMA **" ], [ + "278", + "Eye_M2_0908_R_MT", + "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **" + ], + [ + "382", "Eye_M2_0908_WTWT", "Eye M430v2 WT WT (Sep08) RMA **" ], [ + "279", "Eye_M2_0908_R_WT", "Eye M430v2 WT Tyrp1 (Sep08) RMA **" ], [ - "Eye_M2_0908_R_MT", - "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **" - ], - [ + "400", "DBA2J-ONH-1212", "Howell et al. 2011, DBA/2J Glaucoma Optic Nerve Head M430 2.0 (Dec12) RMA" ], [ + "360", "BXD_GLA_0911", "Howell et al. 2011, DBA/2J Glaucoma Retina M430 2.0 (Sep11) RMA" ] ], "Gastrointestinal mRNA": [ [ + "539", "UTHSC_GutGL_0414", "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Gene Level (Apr14) RMA **" ] @@ -1558,408 +1831,502 @@ ], "Heart mRNA": [ [ + "485", "EPFL-LISPBXDHeCD0114", "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA **" ], [ + "486", "EPFL-LISPBXDHeHFD0114", "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA **" ], [ + "487", "EPFL-LISPBXDHeCDEx0114", "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA **" ], [ + "488", "EPFL-LISPBXDHeHFDEx0114", "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA **" ] ], "Hematopoietic Cells mRNA": [ [ + "149", "UMCG_0907_HemaStem_ori", "UMCG Stem Cells ILM6v1.1 (Apr09) original" ], [ + "145", "UMCG_0907_HemaStem", "UMCG Stem Cells ILM6v1.1 (Apr09) transformed" ], [ + "151", "UMCG_0907_Pro_ori", "UMCG Progenitor Cells ILM6v1.1 (Apr09) original" ], [ + "147", "UMCG_0907_Pro", "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed" ], [ + "150", "UMCG_0907_Eryth_ori", "UMCG Erythroid Cells ILM6v1.1 (Apr09) original" ], [ + "146", "UMCG_0907_Eryth", "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed" ], [ + "148", "UMCG_0907_Myeloid_ori", "UMCG Myeloid Cells ILM6v1.1 (Apr09) original" ], [ + "144", "UMCG_0907_Myeloid", "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed" ], [ + "7", "HC_U_0304_R", "GNF Stem Cells U74Av2 (Mar04) RMA" ] ], "Hippocampus mRNA": [ [ + "112", "HC_M2_0606_P", "Hippocampus Consortium M430v2 (Jun06) PDNN" ], [ + "111", "HC_M2_0606_M", "Hippocampus Consortium M430v2 (Jun06) MAS5" ], [ + "110", "HC_M2_0606_R", "Hippocampus Consortium M430v2 (Jun06) RMA" ], [ + "291", "UT_ILM_BXD_hipp_5T_1112", "UTHSC Hippocampus Illumina v6.1 All Combined (Nov12) RankInv" ], [ + "292", "UT_ILM_BXD_hipp_NON_1112", "UTHSC Hippocampus Illumina v6.1 NON (Nov12) RankInv" ], [ + "293", "UT_ILM_BXD_hipp_NOS_1112", "UTHSC Hippocampus Illumina v6.1 NOS (Nov12) RankInv" ], [ + "294", "UT_ILM_BXD_hipp_NOE_1112", "UTHSC Hippocampus Illumina v6.1 NOE (Nov12) RankInv" ], [ + "295", "UT_ILM_BXD_hipp_RSS_1112", "UTHSC Hippocampus Illumina v6.1 RSS (Nov12) RankInv" ], [ - "UT_ILM_BXD_hipp_RSE_1112", - "UTHSC Hippocampus Illumina v6.1 RSE (Nov12) RankInv" - ], - [ + "206", "UMUTAffyExon_0209_RMA", "UMUTAffy Hippocampus Exon (Feb09) RMA" ], [ + "296", + "UT_ILM_BXD_hipp_RSE_1112", + "UTHSC Hippocampus Illumina v6.1 RSE (Nov12) RankInv" + ], + [ + "242", "UT_ILM_BXD_hipp_NON_0909", "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv" ], [ + "243", "UT_ILM_BXD_hipp_NOS_0909", "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv" ], [ + "246", "UT_ILM_BXD_hipp_NOE_0909", "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv" ], [ + "244", "UT_ILM_BXD_hipp_RSS_0909", "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv" ], [ + "245", "UT_ILM_BXD_hipp_RSE_0909", "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv" ], [ + "393", "UTHSC_BXD_HArev3_0912", "UTHSC BXD Aged Hippocampus rev3 Affy Mouse Gene 1.0 ST (Sep12) RMA **" ], [ + "392", "UTHSC_BXD_H_0912", "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA Exon Level **" ] ], "Hippocampus microRNA": [ [ + "491", "UTHSC_BXD_Hip_miRNASeq0214", "UTHSC BXD Hippocampus Ion Torrent microRNA (Feb14) RPKM **" ] ], "Hypothalamus mRNA": [ [ + "281", "INIA_Hyp_RMA_1110", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)" ], [ + "318", "INIA_Hyp_M_RMA_1110", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male" ], [ + "317", "INIA_Hyp_F_RMA_1110", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female" ], [ + "459", "INIA_Hyp_PCA_0813_v4", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080913" ], [ + "458", "INIA_Hyp_PCA_0813_v3", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080813" ], [ + "457", "INIA_Hyp_PCA_0813_v2", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080513" ], [ + "456", "INIA_Hyp_PCA_0813", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080213" ], [ + "159", "INIA_Hyp_RMA_Ex-1110", "INIA Hypothalamus Exon Affy MoGene 1.0 ST (Nov10)" ] ], "Kidney mRNA": [ [ + "240", "MA_M2M_0706_R", "Mouse kidney M430v2 Male (Aug06) RMA" ], [ + "239", "MA_M2F_0706_R", "Mouse kidney M430v2 Female (Aug06) RMA" ], [ + "118", "MA_M2_0806_R", "Mouse kidney M430v2 Sex Balanced (Aug06) RMA" ], [ + "117", "MA_M2_0806_P", "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN" ], [ - "MA_M2_0706_R", - "Mouse Kidney M430v2 (Jul06) RMA" - ], - [ + "116", "MA_M2_0706_P", "Mouse Kidney M430v2 (Jul06) PDNN" + ], + [ + "115", + "MA_M2_0706_R", + "Mouse Kidney M430v2 (Jul06) RMA" ] ], "Leucocytes mRNA": [ [ + "218", "Illum_BXD_PBL_1108", "UWA Illumina PBL (Nov08) RSN **" ] ], "Liver Metabolome": [ [ + "474", "EPFL-LISP_LivPMetHFD1213", "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14) **" ], [ + "475", "EPFL-LISP_LivPMetCD1213", "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14) **" ] ], "Liver Proteome": [ [ - "EPFLETHZBXDprotCD0514", - "EPFL/ETHZ BXD Liver, Soluble Proteins CD (May14) SWATH **" - ], - [ + "541", "EPFLETHZBXDprotHFD0514", "EPFL/ETHZ BXD Liver, Soluble Proteins HFD (May14) SWATH **" ], [ + "540", + "EPFLETHZBXDprotCD0514", + "EPFL/ETHZ BXD Liver, Soluble Proteins CD (May14) SWATH **" + ], + [ + "489", "EPFLBXDprotHFDRPN0214", "EPFL/LISP BXD Liver, Soluble Proteins HFD (Feb14) SRM **" ], [ + "490", "EPFLBXDprotCDRPN0214", "EPFL/LISP BXD Liver, Soluble Proteins CD (Feb14) SRM **" ] ], "Liver mRNA": [ [ + "373", "GSE16780_UCLA_ML0911", "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA" ], [ + "325", "SUH_Liv_RMA_0611", "SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST (Jun11) RMA" ], [ + "430", "EPFLMouseLiverRMA0413", "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" ], [ + "431", "EPFLMouseLiverHFDRMA0413", "EPFL/LISP BXD HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" ], [ + "432", "EPFLMouseLiverCDRMA0413", "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" ], [ + "433", "EPFLMouseLiverBothExRMA0413", "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level **" ], [ + "256", "GenEx_BXD_liverEt_M5_0912", "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Both Sexes **" ], [ + "257", "GenEx_BXD_liverEt_M5M_0912", "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Males **" ], [ + "258", "GenEx_BXD_liverEt_M5F_0912", "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Females **" ], [ + "307", "GenEx_BXD_liverEt_RMA_0211", "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **" ], [ + "308", "GenEx_BXD_liverEt_RMA_M_0211", "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **" ], [ + "309", "GenEx_BXD_liverEt_RMA_F_0211", "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **" ], [ + "310", "GenEx_BXD_liverSal_RMA_0211", "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **" ], [ + "311", "GenEx_BXD_liverSal_RMA_M_0211", "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **" ], [ + "312", "GenEx_BXD_liverSal_RMA_F_0211", "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **" ] ], "Lung mRNA": [ [ + "160", "HZI_0408_R", "HZI Lung M430v2 (Apr08) RMA" ], [ + "161", "HZI_0408_M", "HZI Lung M430v2 (Apr08) MAS5" ], [ + "468", "HZI_PR8M-F_1113", "HZI PR8M-Infected Lungs Females RNAseq (Nov13) RPKM **" ], [ + "387", "HZI_PR8M_Q_0612", "HZI PR8M-Infected Lungs Agilent4x44 (Apr12) Quantile Females **" ], [ + "424", "HZI_LTCF_0313", "HZI Lung Time Course Flu PR8M (Mar13) Schughart **" ] ], "Midbrain mRNA": [ [ + "381", "VUBXDMouseMidBrainQ0512", "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile" ] ], "Muscle Metabolome": [ [ + "477", "EPFL-LISP_MusPMetHFD1213", "EPFL/LISP BXD Muscle Polar Metabolites HFD (Jun14) **" ], [ + "478", "EPFL-LISP_MusPMetCD1213", "EPFL/LISP BXD Muscle Polar Metabolites CD (Jun14) **" ] ], "Muscle mRNA": [ [ + "395", "EPFLMouseMuscleRMA_Ex1112", "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" ], [ + "396", "EPFLMouseMuscleHFDRMAEx1112", "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" ], [ + "397", "EPFLMouseMuscleCDRMAEx1112", "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" ], [ + "378", "EPFLMouseMuscleRMA1211", "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" ], [ + "380", "EPFLMouseMuscleHFDRMA1211", "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" ], [ + "379", "EPFLMouseMuscleCDRMA1211", "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" ] ], "Neocortex mRNA": [ [ - "DevNeocortex_ILM6.2P3RInv_1111", - "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv" - ], - [ + "375", "DevNeocortex_ILM6.2P14RInv_1111", "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv" ], [ + "374", + "DevNeocortex_ILM6.2P3RInv_1111", + "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv" + ], + [ + "284", "HQFNeoc_1210v2_RankInv", "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv" ], [ + "282", "HQFNeoc_1210_RankInv", "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv" ], [ + "157", "HQFNeoc_0208_RankInv", "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv" ], [ - "DevNeocortex_ILM6.2P14RInv_1110", - "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv" - ], - [ + "274", "DevNeocortex_ILM6.2P3RInv_1110", "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv" + ], + [ + "275", + "DevNeocortex_ILM6.2P14RInv_1110", + "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv" ] ], "Nucleus Accumbens mRNA": [ [ + "156", "VCUSalo_1007_R", "VCU BXD NAc Sal M430 2.0 (Oct07) RMA" ], [ + "155", "VCUEtOH_1007_R", "VCU BXD NAc EtOH M430 2.0 (Oct07) RMA **" ], [ + "154", "VCUSal_1007_R", "VCU BXD NAc EtOH vs Sal M430 2.0 (Oct07) Sscore **" ], [ + "409", "VCU_NAc_Air_0113_R", "VCU BXD NAc CIE Air M430 2.0 (Jan13) RMA **" ], [ + "408", "VCU_NAc_Et_0113_R", "VCU BXD NAc CIE EtOH M430 2.0 (Jan13) RMA **" ], [ + "407", "VCU_NAc_AvE_0113_Ss", "VCU BXD NAc EtOH vs CIE Air M430 2.0 (Jan13) Sscore **" ] @@ -1972,246 +2339,301 @@ ], "Pituitary Gland mRNA": [ [ + "389", "INIA_PG_RMA_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA" ], [ + "427", "INIA_Pituitary_RMA_F_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Females" ], [ + "428", "INIA_Pituitary_RMA_M_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Males" ], [ + "335", "INIA_PG_RMA_Ex_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Exon Level" ] ], "Popliteal Lymph Node mRNA": [ [ + "390", "STJ_PLN_0912", "St Jude BXD Popliteal Lymph Node Affy HT MG-430 PM (Sep12) RMA **" ] ], "Prefrontal Cortex mRNA": [ [ + "135", "VCUSal_1206_R", "VCU BXD PFC Sal M430 2.0 (Dec06) RMA" ], [ + "136", "VCUEtOH_1206_R", "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA" ], [ + "137", "VCUSal_1006_R", "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore" ], [ + "299", "VCU_PF_AvE_0111_Ss", "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **" ], [ + "300", "VCU_PF_Et_0111_R", "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **" ], [ + "301", "VCU_PF_Air_0111_R", "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **" ] ], "Retina mRNA": [ [ + "302", "G2NEI_ILM_Retina_BXD_RI0410", "Normal HEI Retina (April 2010) RankInv" ], [ + "267", "Illum_Retina_BXD_RankInv0410", "Full HEI Retina (April 2010) RankInv" ], [ + "385", "ONCRetILM6_0412", "ONC HEI Retina (April 2012) RankInv" ], [ - "DoDTATRCRetExMoGene2_1313", - "DoD TATRC Retina Affy MoGene 2.0 ST (Dec13) RMA Exon Level" - ], - [ + "471", "DoDTATRCRetMoGene2_1313", "DoD TATRC Retina Affy MoGene 2.0 ST (Dec13) RMA" ], [ + "472", + "DoDTATRCRetExMoGene2_1313", + "DoD TATRC Retina Affy MoGene 2.0 ST (Dec13) RMA Exon Level" + ], + [ + "434", "ONCRetMoGene2_0413", "DoD TATRC Retina Affy MoGene 2.0 ST (Oct13) RMA **" ], [ + "435", "ONCRetExMoGene2_0413", "DoD TATRC Retina Affy MoGene 2.0 ST (Oct13) RMA Exon Level **" ], [ + "479", "DoDTATRCRetBLMoGene2_1213", "DoD TATRC Retina Blast Affy MoGene 2.0 ST (Dec13) RMA **" ], [ + "480", "DoDTATRCRetBLExMoGene2_1213", "DoD TATRC Retina Blast Affy MoGene 2.0 ST (Dec13) RMA Exon Level **" ], [ + "386", "B6D2ONCILM_0412", "B6D2 ONC Retina (April 2012) RankInv **" ], [ - "G2HEIONCRetILM6_0911", - "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **" - ], - [ + "371", "HEIONCvsCRetILM6_0911", "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **" + ], + [ + "372", + "G2HEIONCRetILM6_0911", + "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **" ] ], "Spleen mRNA": [ [ + "283", "UTHSC_SPL_RMA_1210", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA" ], [ + "286", "UTHSC_SPL_RMA_1210M", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Males" ], [ + "287", "UTHSC_SPL_RMA_1210F", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Females" ], [ + "429", "UTHSC_SPL_RMAEx_1210", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Exon Level" ], [ + "271", "UTHSC_SPL_RMA_1010", "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA" ], [ + "260", "UTK_BXDSpl_VST_0110", "UTK Spleen ILM6.1 (Jan10) VST" ], [ + "227", "IoP_SPL_RMA_0509", "IoP Affy MOE 430v2 Spleen (May09) RMA" ], [ + "216", "Illum_BXD_Spl_1108", "UWA Illumina Spleen (Nov08) RSN **" ] ], "Striatum mRNA": [ [ + "399", "Striatum_Exon_1212", "HQF Striatum Affy Mouse Exon 1.0ST Gene Level (Dec09) RMA" ], [ + "163", "Striatum_Exon_0209", "HQF Striatum Affy Mouse Exon 1.0ST Exon Level (Dec09) RMA" ], [ + "285", "UTHSC_Striatum_RankInv_1210", "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv" ], [ + "298", "UTHSC_Str_RankInv_1210", "HQF BXD Striatum ILM6.1 (Dec10) RankInv" ], [ + "152", "UTHSC_1107_RankInv", "HQF BXD Striatum ILM6.1 (Nov07) RankInv" ], [ + "74", "SA_M2_0405_MC", "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean" ], [ + "69", "SA_M2_0405_RC", "HBP Rosen Striatum M430V2 (Apr05) RMA Clean" ], [ + "68", "SA_M2_0405_PC", "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean" ], [ + "67", "SA_M2_0405_SS", "HBP Rosen Striatum M430V2 (Apr05) SScore" ], [ + "66", "SA_M2_0405_RR", "HBP Rosen Striatum M430V2 (Apr05) RMA Orig" ], [ + "376", "DevStriatum_ILM6.2P3RInv_1111", "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **" ], [ + "377", "DevStriatum_ILM6.2P14RInv_1111", "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **" ], [ - "DevStriatum_ILM6.2P3RInv_1110", - "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **" - ], - [ + "277", "DevStriatum_ILM6.2P14RInv_1110", "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **" + ], + [ + "276", + "DevStriatum_ILM6.2P3RInv_1110", + "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **" ] ], "T Cell (helper) mRNA": [ [ + "319", "RTHC_0211_R", "HZI Thelp M430v2 (Feb11) RMA" ] ], "T Cell (regulatory) mRNA": [ [ + "122", "RTC_1106_R", "HZI Treg M430v2 (Feb11) RMA" ] ], "Thymus mRNA": [ [ + "217", "Illum_BXD_Thy_1108", "UWA Illumina Thymus (Nov08) RSN **" ] ], "Ventral Tegmental Area mRNA": [ [ + "229", + "VCUEtOH_0609_R", + "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **" + ], + [ + "228", "VCUSal_0609_R", "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **" ], [ + "230", "VCUEtvsSal_0609_R", "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **" - ], - [ - "VCUEtOH_0609_R", - "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **" ] ] }, "BXH": { "Bone Femur mRNA": [ [ + "412", "UCLA_BXH_Femur_0113_RSN", "UCLA GSE27483 BXH Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ] ], "Cartilage mRNA": [ [ + "209", "UCLA_BXHBXD_CARTILAGE_V2", "UCLA BXH and BXD Cartilage v2" ], [ + "205", "UCLA_BXHBXD_CARTILAGE", "UCLA BXH and BXD Cartilage" ], [ + "179", "UCLA_BXH_CARTILAGE", "UCLA BXH Cartilage" ] @@ -2224,6 +2646,7 @@ ], "Liver mRNA": [ [ + "353", "GSE16780BXH_UCLA_ML0911", "GSE16780 UCLA Mouse BXH Liver Affy HT M430A (Sep11) RMA" ] @@ -2252,28 +2675,34 @@ "CTB6F2": { "Adipose mRNA": [ [ + "170", "UCLA_CTB6B6CTF2_ADIPOSE_2005", "UCLA CTB6/B6CTF2 Adipose (2005) mlratio" ], [ + "189", "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE", "UCLA CTB6B6CTF2 Adipose Female mlratio **" ], [ + "188", "UCLA_CTB6B6CTF2_ADIPOSE_MALE", "UCLA CTB6B6CTF2 Adipose Male mlratio **" ] ], "Brain mRNA": [ [ + "171", "UCLA_CTB6B6CTF2_BRAIN_2005", "UCLA CTB6/B6CTF2 Brain (2005) mlratio" ], [ + "190", "UCLA_CTB6B6CTF2_BRAIN_MALE", "UCLA CTB6/B6CTF2 Brain Males (2005) mlratio" ], [ + "191", "UCLA_CTB6B6CTF2_BRAIN_FEMALE", "UCLA CTB6/B6CTF2 Brain Females (2005) mlratio" ] @@ -2286,28 +2715,34 @@ ], "Liver mRNA": [ [ + "172", "UCLA_CTB6B6CTF2_LIVER_2005", "UCLA CTB6/B6CTF2 Liver (2005) mlratio" ], [ + "193", "UCLA_CTB6B6CTF2_LIVER_FEMALE", "UCLA CTB6B6CTF2 Liver Female mlratio **" ], [ + "192", "UCLA_CTB6B6CTF2_LIVER_MALE", "UCLA CTB6B6CTF2 Liver Male mlratio **" ] ], "Muscle mRNA": [ [ + "173", "UCLA_CTB6B6CTF2_MUSCLE_2005", "UCLA CTB6/B6CTF2 Muscle (2005) mlratio" ], [ + "195", "UCLA_CTB6B6CTF2_MUSCLE_FEMALE", "UCLA CTB6B6CTF2 Muscle Female mlratio **" ], [ + "194", "UCLA_CTB6B6CTF2_MUSCLE_MALE", "UCLA CTB6B6CTF2 Muscle Male mlratio **" ] @@ -2328,12 +2763,14 @@ ], "Hippocampus mRNA": [ [ - "HC_M2CB_1205_P", - "Hippocampus Consortium M430v2 CXB (Dec05) PDNN" - ], - [ + "100", "HC_M2CB_1205_R", "Hippocampus Consortium M430v2 CXB (Dec05) RMA" + ], + [ + "99", + "HC_M2CB_1205_P", + "Hippocampus Consortium M430v2 CXB (Dec05) PDNN" ] ], "Phenotypes": [ @@ -2344,6 +2781,7 @@ ], "Spleen mRNA": [ [ + "153", "STSPL_1107_R", "Stuart Spleen M430v2 (Nov07) RMA" ] @@ -2352,18 +2790,21 @@ "HS": { "Hippocampus mRNA": [ [ + "268", "OXUKHS_ILMHipp_RI0510", "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv" ] ], "Liver mRNA": [ [ + "269", "OXUKHS_ILMLiver_RI0510", "OX UK HS ILM6v1.1 Liver (May 2010) RankInv" ] ], "Lung mRNA": [ [ + "270", "OXUKHS_ILMLung_RI0510", "OX UK HS ILM6v1.1 Lung (May 2010) RankInv" ] @@ -2378,6 +2819,7 @@ "HS-CC": { "Striatum mRNA": [ [ + "304", "OHSU_HS-CC_ILMStr_0211", "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv" ] @@ -2392,52 +2834,64 @@ ], "Hippocampus mRNA": [ [ + "143", "Illum_LXS_Hipp_loess0807", "Hippocampus Illumina (Aug07) LOESS" ], [ + "142", "Illum_LXS_Hipp_loess_nb0807", "Hippocampus Illumina (Aug07) LOESS_NB" ], [ + "141", "Illum_LXS_Hipp_quant0807", "Hippocampus Illumina (Aug07) QUANT" ], [ + "140", "Illum_LXS_Hipp_quant_nb0807", "Hippocampus Illumina (Aug07) QUANT_NB" ], [ + "139", "Illum_LXS_Hipp_rsn0807", "Hippocampus Illumina (Aug07) RSN" ], [ + "138", "Illum_LXS_Hipp_rsn_nb0807", "Hippocampus Illumina (Aug07) RSN_NB" ], [ + "133", "Hipp_Illumina_RankInv_0507", "Hippocampus Illumina (May07) RankInv" ], [ + "212", + "Illum_LXS_Hipp_RSE_1008", + "Hippocampus Illumina RSE (Oct08) RankInv beta" + ], + [ + "214", "Illum_LXS_Hipp_NOE_1008", "Hippocampus Illumina NOE (Oct08) RankInv beta" ], [ + "211", "Illum_LXS_Hipp_RSS_1008", "Hippocampus Illumina RSS (Oct08) RankInv beta" ], [ + "213", "Illum_LXS_Hipp_NOS_1008", "Hippocampus Illumina NOS (Oct08) RankInv beta" ], [ + "219", "Illum_LXS_Hipp_NON_1008", "Hippocampus Illumina NON (Oct08) RankInv beta" - ], - [ - "Illum_LXS_Hipp_RSE_1008", - "Hippocampus Illumina RSE (Oct08) RankInv beta" ] ], "Phenotypes": [ @@ -2448,16 +2902,19 @@ ], "Prefrontal Cortex mRNA": [ [ + "131", + "VCUEtOH_0806_R", + "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **" + ], + [ + "130", "VCUSal_0806_R", "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA" ], [ + "132", "VCUEt_vs_Sal_0806_R", "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **" - ], - [ - "VCUEtOH_0806_R", - "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **" ] ] }, @@ -2478,12 +2935,14 @@ "MDP": { "Bone Femur mRNA": [ [ + "413", "UCLA_MDP_Femur_0113_RSN", "UCLA GSE27483 MDP Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ] ], "Dorsal Root Ganglia mRNA": [ [ + "402", "TSRI-DRG-AffyMOE430_0113-MDP", "TSRI DRG Affy Mouse Genome 430 2.0 (Jan13) RMA MDP" ] @@ -2496,32 +2955,39 @@ ], "Hippocampus mRNA": [ [ - "HC_M2_0606_MDP", - "Hippocampus Consortium M430v2 (Jun06) RMA MDP" - ], - [ + "273", "UMUTAffyExon_0209_RMA_MDP", "UMUTAffy Hippocampus Exon (Feb09) RMA MDP" + ], + [ + "272", + "HC_M2_0606_MDP", + "Hippocampus Consortium M430v2 (Jun06) RMA MDP" ] ], "Liver mRNA": [ [ + "370", "GSE16780MDP_UCLA_ML0911", "GSE16780 UCLA Mouse MDP Liver Affy HT M430A (Sep11) RMA" ], [ + "357", "JAX_CSB_L_0711", "JAX Liver Affy M430 2.0 (Jul11) MDP" ], [ + "358", "JAX_CSB_L_HF_0711", "JAX Liver HF Affy M430 2.0 (Jul11) MDP" ], [ + "359", "JAX_CSB_L_6C_0711", "JAX Liver 6C Affy M430 2.0 (Jul11) MDP" ], [ + "403", "JAX_liver_agil_MDP-0113", "Harrill-Rusyn MDP Liver Acetaminophen Tox Study (G4121A, 2009)" ] @@ -2536,6 +3002,7 @@ "NZBXFVB-N2": { "Mammary Tumors mRNA": [ [ + "225", "NCI_Mam_Tum_RMA_0409", "NCI Mammary M430v2 (Apr09) RMA" ] @@ -2558,10 +3025,12 @@ "Scripps-2013": { "Anterior Cingulate Cortex mRNA": [ [ + "450", "ScrBXDACC4G0513", "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Gene Level **" ], [ + "451", "ScrBXDACC4GEx0513", "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Exon Level **" ] @@ -2580,6 +3049,7 @@ "HXBBXH": { "Adrenal Gland mRNA": [ [ + "220", "HXB_Adrenal_1208", "MDC/CAS/UCL Adrenal 230A (Dec08) RMA" ] @@ -2592,42 +3062,50 @@ ], "Heart mRNA": [ [ + "221", "HXB_Heart_1208", "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA" ] ], "Hippocampus mRNA": [ [ + "231", "UT_HippRatEx_RMA_0709", "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA" ] ], "Kidney mRNA": [ [ + "70", "KI_2A_0405_M", "MDC/CAS/ICL Kidney 230A (Apr05) MAS5" ], [ + "65", "KI_2A_0405_Rz", "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8" ], [ + "64", "KI_2A_0405_R", "MDC/CAS/ICL Kidney 230A (Apr05) RMA" ] ], "Liver mRNA": [ [ + "222", "HXB_Liver_1208", "MDC/CAS/UCL Liver 230v2 (Dec08) RMA" ] ], "Peritoneal Fat mRNA": [ [ + "79", "FT_2A_0805_M", "MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5" ], [ + "75", "FT_2A_0605_Rz", "MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8" ] @@ -2642,6 +3120,7 @@ "SRxSHRSPF2": { "Eye mRNA": [ [ + "226", "UIOWA_Eye_RMA_0906", "UIOWA Eye mRNA RAE230v2 (Sep06) RMA" ] diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js index f91504be..1fe4cf75 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js +++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js @@ -28,6 +28,7 @@ $(function() { window.populate_group = populate_group; populate_type = function() { var group, species, type_list; + console.log("in populate type"); species = $('#species').val(); group = $('#group').val(); type_list = this.jdata.types[species][group]; @@ -37,6 +38,7 @@ $(function() { window.populate_type = populate_type; populate_dataset = function() { var dataset_list, group, species, type; + console.log("in populate dataset"); species = $('#species').val(); group = $('#group').val(); type = $('#type').val(); @@ -53,7 +55,11 @@ $(function() { _results = []; for (_i = 0, _len = items.length; _i < _len; _i++) { item = items[_i]; - _results.push(dropdown.append($("<option />").val(item[0]).text(item[1]))); + if (item.length > 2){ + _results.push(dropdown.append($("<option data-id=\""+item[0]+"\" />").val(item[1]).text(item[2]))); + } else { + _results.push(dropdown.append($("<option />").val(item[0]).text(item[1]))); + } } return _results; }; @@ -87,8 +93,8 @@ $(function() { $('#group_info').click(group_info); dataset_info = function() { var dataset, url; - dataset = $('#dataset').val(); - url = "/webqtl/main.py?FormID=sharinginfo&InfoPageName=" + dataset; + accession_id = $('#dataset option:selected').data("id"); + url = "http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=" + accession_id; return open_window(url, "Dataset Info"); }; $('#dataset_info').click(dataset_info); diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html index 4803b17c..5d658bc7 100755 --- a/wqflask/wqflask/templates/index_page.html +++ b/wqflask/wqflask/templates/index_page.html @@ -61,10 +61,13 @@ <div class="form-group"> <label for="dataset" class="col-xs-1 control-label" style="width: 65px !important;">Dataset:</label> <div class="col-xs-10 controls input-append"> - <div class="col-xs-8"> - <select name="dataset" id="dataset" class="form-control span5" style="width: 450px !important;"></select> + <div class="col-xs-10"> + <select name="dataset" id="dataset" class="form-control span5" style="width: 340px !important;"></select> <i class="icon-question-sign"></i> </div> + <div class="col-xs-2"> + <button type="button" id="dataset_info" class="btn btn-primary form-control" style="width: 75px !important;">Info</button> + </div> </div> </div> diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html index 7b7f0037..02365b1d 100755 --- a/wqflask/wqflask/templates/search_result_page.html +++ b/wqflask/wqflask/templates/search_result_page.html @@ -16,7 +16,7 @@ <input type="hidden" name="uc_id" id="uc_id" value="{{ uc_id }}"> <!-- Need to customize text more for other types of searches --> - <p>We searched <a href="/static/dbdoc/{{dataset.fullname}}">{{ dataset.fullname }}</a> + <p>We searched <a href="http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{dataset.id}}">{{ dataset.fullname }}</a> to find all records {% for word in search_terms %} {% if word.key|lower == "rif" %} |