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authorZachary Sloan2013-04-30 19:16:51 +0000
committerZachary Sloan2013-04-30 19:16:51 +0000
commitd4138b76eae3aa54ba18d44d753cb440aac7a0f8 (patch)
tree2863714514b064b7c4a3c255e3dbc2010da10729 /wqflask
parent275f9210a7af6a2de32e8e102de816276b5ef237 (diff)
downloadgenenetwork2-d4138b76eae3aa54ba18d44d753cb440aac7a0f8.tar.gz
Did a little with correlation_plot.py
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/correlation/correlation_plot.py7
-rw-r--r--wqflask/wqflask/my_pylmm/pyLMM/process_plink.py2
2 files changed, 7 insertions, 2 deletions
diff --git a/wqflask/wqflask/correlation/correlation_plot.py b/wqflask/wqflask/correlation/correlation_plot.py
index 4b043fc3..c2b64d70 100644
--- a/wqflask/wqflask/correlation/correlation_plot.py
+++ b/wqflask/wqflask/correlation/correlation_plot.py
@@ -24,6 +24,10 @@ class CorrelationPlot(object):
self.samples_1 = self.get_samples(self.dataset1, sample_names_1, self.trait1)
self.samples_2 = self.get_samples(self.dataset2, sample_names_2, self.trait2)
+ coords = {}
+ for sample in self.samples_1:
+ coords[sample.name] = (sample.val)
+
def get_sample_names(self, dataset):
if dataset.group.parlist:
@@ -45,4 +49,5 @@ class CorrelationPlot(object):
sample_group_type='primary',
header="%s Only" % (dataset.group.name))
- return samples \ No newline at end of file
+ return samples
+ \ No newline at end of file
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py b/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py
index 8f7ad243..1274fe50 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py
@@ -17,6 +17,7 @@ identifier = plink_data['identifier']
print("identifier: ", identifier)
+
ps, ts = lmm.human_association(snp,
n,
keep,
@@ -25,4 +26,3 @@ ps, ts = lmm.human_association(snp,
covariate_matrix,
kinship_matrix,
refit)
-