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| author | uditgulati | 2021-03-06 15:59:18 -0600 |
|---|---|---|
| committer | BonfaceKilz | 2021-05-10 12:23:57 +0300 |
| commit | a9fb861de6834f7a3351c08bf2bde00810921ac7 (patch) | |
| tree | 1c0c9e3f912e45c50e908622df7fe35a74b58d4c /wqflask | |
| parent | 1afece5464520700901cbde19599ac45222ea58f (diff) | |
| download | genenetwork2-a9fb861de6834f7a3351c08bf2bde00810921ac7.tar.gz | |
update gsearch pheno search
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/gsearch.py | 12 |
1 files changed, 2 insertions, 10 deletions
diff --git a/wqflask/wqflask/gsearch.py b/wqflask/wqflask/gsearch.py index fb8bdc55..262ba3c2 100644 --- a/wqflask/wqflask/gsearch.py +++ b/wqflask/wqflask/gsearch.py @@ -177,16 +177,8 @@ class GSearch: {0} AND PublishXRef.`PhenotypeId`=Phenotype.`Id` AND PublishXRef.`PublicationId`=Publication.`Id` - AND (Phenotype.Post_publication_description REGEXP "[[:<:]]{1}[[:>:]]" - OR Phenotype.Pre_publication_description REGEXP "[[:<:]]{1}[[:>:]]" - OR Phenotype.Pre_publication_abbreviation REGEXP "[[:<:]]{1}[[:>:]]" - OR Phenotype.Post_publication_abbreviation REGEXP "[[:<:]]{1}[[:>:]]" - OR Phenotype.Lab_code REGEXP "[[:<:]]{1}[[:>:]]" - OR Publication.PubMed_ID REGEXP "[[:<:]]{1}[[:>:]]" - OR Publication.Abstract REGEXP "[[:<:]]{1}[[:>:]]" - OR Publication.Title REGEXP "[[:<:]]{1}[[:>:]]" - OR Publication.Authors REGEXP "[[:<:]]{1}[[:>:]]" - OR PublishXRef.Id REGEXP "[[:<:]]{1}[[:>:]]") + AND (MATCH (Phenotype.Post_publication_description, Phenotype.Pre_publication_description, Phenotype.Pre_publication_abbreviation, Phenotype.Post_publication_abbreviation, Phenotype.Lab_code) AGAINST ('{1}' IN BOOLEAN MODE) ) + AND (MATCH (Publication.Abstract, Publication.Title, Publication.Authors) AGAINST ('{1}' IN BOOLEAN MODE) ) ORDER BY Species.`Name`, InbredSet.`Name`, PublishXRef.`Id` LIMIT 6000 """.format(group_clause, search_term) |