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author | Alexander_Kabui | 2023-04-11 18:25:04 +0300 |
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committer | Alexander_Kabui | 2023-04-11 18:25:04 +0300 |
commit | 7fcd0aee1d9753856c14c8b4a21c6094dc7727ff (patch) | |
tree | ba09c1f8f3138a198d5b79db4b20651946031b59 /wqflask | |
parent | 8cf19b761c036f94e20c1ba7e214134173d9484c (diff) | |
download | genenetwork2-7fcd0aee1d9753856c14c8b4a21c6094dc7727ff.tar.gz |
modify default textfile path
Diffstat (limited to 'wqflask')
-rw-r--r-- | wqflask/wqflask/correlation/pre_computes.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/wqflask/wqflask/correlation/pre_computes.py b/wqflask/wqflask/correlation/pre_computes.py index f21ec06a..961f5161 100644 --- a/wqflask/wqflask/correlation/pre_computes.py +++ b/wqflask/wqflask/correlation/pre_computes.py @@ -171,13 +171,13 @@ def get_datasets_data(base_dataset, target_dataset_data): return (target_results, base_results) -def fetch_text_file(dataset_name, conn, text_dir=TEXTDIR): +def fetch_text_file(dataset_name, conn, text_dir=TMPDIR): """fetch textfiles with strain vals if exists""" def __file_scanner__(text_dir,target_file): for file in os.listdir(text_dir): - if file.startswith(f"ProbeSetFreezeId_{results[0]}_"): + if file.startswith(f"ProbeSetFreezeId_{target_file}_"): return os.path.join(text_dir,file) with conn.cursor() as cursor: @@ -186,9 +186,9 @@ def fetch_text_file(dataset_name, conn, text_dir=TEXTDIR): results = cursor.fetchone() if results: try: - # addition check for matrix file in gn_matrix folder + # checks first for recently generated textfiles if not use gn1 datamatrix - return __file_scanner__(text_dir,results) or __file_scanner__(TEXTDIR,results) + return __file_scanner__(text_dir,results[0]) or __file_scanner__(TEXTDIR,results[0]) except Exception: pass |