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| author | zsloan | 2021-10-13 17:46:18 +0000 |
|---|---|---|
| committer | zsloan | 2021-10-13 17:46:18 +0000 |
| commit | 25cafac773edf3a053819b53ef860321a678941a (patch) | |
| tree | 3f35c7951cbf5986e69952abbea6fb0f9f638d82 /wqflask | |
| parent | a212ad123f902b6a9c74bcac1d98bc274cebbdda (diff) | |
| download | genenetwork2-25cafac773edf3a053819b53ef860321a678941a.tar.gz | |
Fix issue where score_type being set wrong caused an error when exporting mapping results (a while back it was changed from LOD to -logP)
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/marker_regression/run_mapping.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py index 80094057..769b9240 100644 --- a/wqflask/wqflask/marker_regression/run_mapping.py +++ b/wqflask/wqflask/marker_regression/run_mapping.py @@ -230,7 +230,7 @@ class RunMapping: self.perm_strata = get_perm_strata( self.this_trait, primary_samples, self.categorical_vars, self.samples) - self.score_type = "LOD" + self.score_type = "-logP" self.control_marker = start_vars['control_marker'] self.do_control = start_vars['do_control'] if 'mapmethod_rqtl_geno' in start_vars: |