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| author | zsloan | 2021-08-10 20:19:27 +0000 |
|---|---|---|
| committer | zsloan | 2021-08-10 20:19:27 +0000 |
| commit | 10ef0e532324e838c7be5a0f7f451dcaec9c2ce8 (patch) | |
| tree | 3e05a1ea2c102cb0fd66763a1b3cdb4f0a95ce0e /wqflask | |
| parent | 162851e8f92ed6d01c25d4f6034bcac4986e8094 (diff) | |
| download | genenetwork2-10ef0e532324e838c7be5a0f7f451dcaec9c2ce8.tar.gz | |
Fixed issue that caused correlations to not work with temp traits after switching to using the GN3 code
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/correlation/correlation_gn3_api.py | 7 | ||||
| -rw-r--r-- | wqflask/wqflask/correlation/show_corr_results.py | 5 |
2 files changed, 9 insertions, 3 deletions
diff --git a/wqflask/wqflask/correlation/correlation_gn3_api.py b/wqflask/wqflask/correlation/correlation_gn3_api.py index c96da8ee..f7c06a46 100644 --- a/wqflask/wqflask/correlation/correlation_gn3_api.py +++ b/wqflask/wqflask/correlation/correlation_gn3_api.py @@ -18,7 +18,10 @@ from gn3.db_utils import database_connector def create_target_this_trait(start_vars): """this function creates the required trait and target dataset for correlation""" - this_dataset = data_set.create_dataset(dataset_name=start_vars['dataset']) + if start_vars['dataset'] == "Temp": + this_dataset = data_set.create_dataset(dataset_name="Temp", dataset_type="Temp", group_name=start_vars['group']) + else: + this_dataset = data_set.create_dataset(dataset_name=start_vars['dataset']) target_dataset = data_set.create_dataset( dataset_name=start_vars['corr_dataset']) this_trait = create_trait(dataset=this_dataset, @@ -306,4 +309,4 @@ def get_tissue_correlation_input(this_trait, trait_symbol_dict): "trait_symbol_dict": trait_symbol_dict, "symbol_tissue_vals_dict": corr_result_tissue_vals_dict } - return (primary_tissue_data, target_tissue_data)
\ No newline at end of file + return (primary_tissue_data, target_tissue_data) diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index e2daa991..d73965da 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -30,7 +30,10 @@ def set_template_vars(start_vars, correlation_data): corr_type = start_vars['corr_type'] corr_method = start_vars['corr_sample_method'] - this_dataset_ob = create_dataset(dataset_name=start_vars['dataset']) + if start_vars['dataset'] == "Temp": + this_dataset_ob = create_dataset(dataset_name="Temp", dataset_type="Temp", group_name=start_vars['group']) + else: + this_dataset_ob = create_dataset(dataset_name=start_vars['dataset']) this_trait = create_trait(dataset=this_dataset_ob, name=start_vars['trait_id']) |