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authorZachary Sloan2012-10-19 18:26:18 -0500
committerZachary Sloan2012-10-19 18:26:18 -0500
commitbbc5e266213e44af5713f7c9a4bbfd7f1035ad1d (patch)
tree1894573b3b3ebd3aeff3b866e66f9cfd85131a14 /wqflask
parentd53c70c1f2eb71077086ca7ad13eb59158d1351b (diff)
downloadgenenetwork2-bbc5e266213e44af5713f7c9a4bbfd7f1035ad1d.tar.gz
Finished gen_select_dataset.py which generates the json file that defines the
data structure used for the index page select dropdowns
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/maintenance/gen_select_dataset.py724
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_menu_structure.json6792
2 files changed, 6911 insertions, 605 deletions
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
index 7d2605c1..33813051 100644
--- a/wqflask/maintenance/gen_select_dataset.py
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -19,622 +19,136 @@
#
#
# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by NL 2011/01/27
-# created by Ning Liu 07/01/2010
-# This script is to generate selectDatasetMenu.js file for cascade menu in the main search page http://www.genenetwork.org/.
-# This script will be run automatically every one hour or manually when database has been changed .
+# This script is to generate the data for the main menus on the home page
+# It needs to be run manually when database has been changed .
from __future__ import print_function, division
-import sys, os
+import sys
-current_file_name = __file__
-pathname = os.path.dirname( current_file_name )
-abs_path = os.path.abspath(pathname)
-sys.path.insert(0, abs_path + '/..')
+sys.path.insert(0, "..")
import MySQLdb
-import os
-import string
-import time
-import datetime
-
-from base import template
-from base import webqtlConfig
-
-#################################################################################
-# input: searchArray, targetValue
-# function: retrieve index info of target value in designated array (searchArray)
-# output: return index info
-##################################################################################
-def getIndex(searchArray=None, targetValue=None):
- for index in range(len(searchArray)):
- if searchArray[index][0]==targetValue:
- return index
-
-# build MySql database connection
-con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER, user=webqtlConfig.DB_USER,passwd=webqtlConfig.DB_PASSWD)
-cursor = con.cursor()
-# create js_select.js file
-fileHandler = open(webqtlConfig.HTMLPATH + 'javascript/selectDatasetMenu.js', 'w')
+import simplejson as json
-# define SpeciesString, GroupString, TypeString, DatabasingString, LinkageString for output
-# outputSpeciesStr is for building Species Array(sArr) in js file; outputGroupStr is for Group Array(gArr)
-# outputTypeStr is for Type Array(tArr); outputDatabaseStr is for Database Array(dArr)
-# outputLinkStr is for Linkage Array(lArr)
-outputTimeStr ="/* Generated Date : %s , Time : %s */ \n" % (datetime.date.today(),time.strftime("%H:%M ", time.localtime()))
-outputTimeStr =""
-outputSpeciesStr ='var sArr = [\n{txt:\'\',val:\'\'},\n'
-outputGroupStr ='var gArr = [\n{txt:\'\',val:\'\'},\n'
-outputTypeStr ='var tArr = [\n{txt:\'\',val:\'\'},\n'
-outputDatabaseStr ='var dArr = [\n{txt:\'\',val:\'\'},\n'
-outputLinkStr ='var lArr = [\n null,\n'
+from pprint import pformat as pf
-# built speices array in js file for select menu in the main search page http://www.genenetwork.org/
-cursor.execute("select Name, MenuName from Species order by OrderId")
-speciesResult = cursor.fetchall()
-speciesTotalResult = list(speciesResult)
-speciesResultsTotalNum = cursor.rowcount
-if speciesResultsTotalNum >0:
- for speciesItem in speciesResult:
- speciesVal = speciesItem[0]
- speciesTxt = speciesItem[1]
- outputSpeciesStr += '{txt:\'%s\',val:\'%s\'},\n'%(speciesTxt,speciesVal)
-# 'All Species' option for 'Species' select menu
-outputSpeciesStr +='{txt:\'All Species\',val:\'All Species\'}];\n\n'
-#speciesTotalResult is a list which inclues all species' options
-speciesTotalResult.append(('All Species','All Species'))
-
-# built group array in js file for select menu in the main search page http://www.genenetwork.org/
-cursor.execute("select distinct InbredSet.Name, InbredSet.FullName from InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze where InbredSet.SpeciesId= Species.Id and InbredSet.Name != 'BXD300' and (PublishFreeze.InbredSetId = InbredSet.Id or GenoFreeze.InbredSetId = InbredSet.Id or ProbeFreeze.InbredSetId = InbredSet.Id) order by InbredSet.Name")
-groupResults = cursor.fetchall()
-groupTotalResults = list(groupResults)
-groupResultsTotalNum = cursor.rowcount
-if groupResultsTotalNum > 0:
- for groupItem in groupResults:
- groupVal = groupItem[0]
- groupTxt = groupItem[1]
- outputGroupStr += '{txt:\'%s\',val:\'%s\'},\n'%(groupTxt,groupVal)
-# add 'All Groups' option for 'Group' select menu
-outputGroupStr +='{txt:\'All Groups\',val:\'all groups\'}];\n\n'
-# groupTotalResults is a list which inclues all groups' options
-groupTotalResults.append(('all groups','All Groups'))
-
-# built type array in js file for select menu in the main search page http://www.genenetwork.org/
-cross = groupVal
-cursor.execute("select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeSetFreeze.public > %d order by Tissue.Name" % (webqtlConfig.PUBLICTHRESH))
-typeResults = cursor.fetchall()
-typeTotalResults = list(typeResults)
-typeResultsTotalNum = cursor.rowcount
-if typeResultsTotalNum > 0:
- for typeItem in typeResults:
- typeVal = typeItem[0]
- typeTxt = typeItem[1]
- outputTypeStr += '{txt:\'%s\',val:\'%s\'},\n'%(typeTxt,typeVal)
-# add 'Phenotypes' and 'Genotypes' options for 'Type' select menu
-outputTypeStr +='{txt:\'Phenotypes\',val:\'Phenotypes\'},\n'
-outputTypeStr +='{txt:\'Genotypes\',val:\'Genotypes\'}];\n\n'
-# typeTotalResults is a list which inclues all types' options
-typeTotalResults.append(('Phenotypes','Phenotypes'))
-typeTotalResults.append(('Genotypes','Genotypes'))
-
-# built dataset array in js file for select menu in the main search page http://www.genenetwork.org/
-tissue = typeVal
-cursor.execute("select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and ProbeSetFreeze.public > %d order by ProbeSetFreeze.CreateTime desc" % (webqtlConfig.PUBLICTHRESH))
-datasetResults = cursor.fetchall()
-datasetTotalResults = list(datasetResults)
-datasetResultsTotalNum = cursor.rowcount
-if datasetResultsTotalNum > 0:
- for datasetItem in datasetResults:
- datasetVal = datasetItem[0]
- datasetTxt = datasetItem[1]
- outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'%(datasetTxt,datasetVal)
-
-# This part is to built linkage array in js file, the linkage is among Species, Group, Type and Database.
-# The format of linkage array is [speciesIndex, groupIndex, typeIndex, databaseIndex]
-if speciesResultsTotalNum >0:
- for speciesItem in speciesResult:
- speciesVal = speciesItem[0]
- sIndex = getIndex(searchArray=speciesTotalResult,targetValue=speciesVal)+1
-
- # retrieve group info based on specie
- cursor.execute("select distinct InbredSet.Name, InbredSet.FullName from InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze where InbredSet.SpeciesId= Species.Id and Species.Name='%s' and InbredSet.Name != 'BXD300' and (PublishFreeze.InbredSetId = InbredSet.Id or GenoFreeze.InbredSetId = InbredSet.Id or ProbeFreeze.InbredSetId = InbredSet.Id) order by InbredSet.Name" % speciesVal)
- groupResults = cursor.fetchall()
- groupResultsNum = cursor.rowcount
+from base import webqtlConfig
- if groupResultsNum > 0:
- for groupItem in groupResults:
- groupVal = groupItem[0]
- gIndex = getIndex(searchArray=groupTotalResults, targetValue=groupVal)+1
- cross = groupVal
- # if group also exists in PublishFreeze table, then needs to add related Published Phenotypes in Database Array(dArr) and Linkage Array(lArr)
- # 'MDP' case is related to 'Mouse Phenome Database'
- cursor.execute("select PublishFreeze.Id from PublishFreeze, InbredSet where PublishFreeze.InbredSetId = InbredSet.Id and InbredSet.Name = '%s'" % cross)
- if (cursor.fetchall()):
- typeVal = "Phenotypes"
- if cross=='MDP':
- datasetTxt = "Mouse Phenome Database"
+# build MySql database connection
+Con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER,
+ user=webqtlConfig.DB_USER,
+ passwd=webqtlConfig.DB_PASSWD)
+Cursor = Con.cursor()
+
+
+def get_species():
+ """Build species list"""
+ Cursor.execute("select Name, MenuName from Species order by OrderId")
+ species = list(Cursor.fetchall())
+ return species
+
+
+def get_groups(species):
+ """Build groups list"""
+ groups = {}
+ for species_name, _species_full_name in species:
+ Cursor.execute("""select InbredSet.Name, InbredSet.FullName from InbredSet,
+ Species,
+ ProbeFreeze, GenoFreeze, PublishFreeze where Species.Name = %s
+ and InbredSet.SpeciesId = Species.Id and InbredSet.Name != 'BXD300' and
+ (PublishFreeze.InbredSetId = InbredSet.Id
+ or GenoFreeze.InbredSetId = InbredSet.Id
+ or ProbeFreeze.InbredSetId = InbredSet.Id)
+ group by InbredSet.Name
+ order by InbredSet.Name""", (species_name))
+ groups[species_name] = list(Cursor.fetchall())
+ return groups
+
+
+def get_types(groups):
+ """Build types list"""
+ types = {}
+ for species, group_dict in groups.iteritems():
+ types[species] = {}
+ for group_name, _group_full_name in group_dict:
+ # make group an alias to shorten the code
+ group = types[species][group_name] = [("Phenotypes", "Phenotypes"),
+ ("Genotypes", "Genotypes")]
+ Cursor.execute("""select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from
+ ProbeFreeze,
+ ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and
+ ProbeFreeze.InbredSetId = InbredSet.Id and
+ InbredSet.Name = %s and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and
+ ProbeSetFreeze.public > %s
+ order by Tissue.Name""", (group_name, webqtlConfig.PUBLICTHRESH))
+ group += Cursor.fetchall()
+ return types
+
+
+def get_datasets(types):
+ """Build datasets list"""
+ datasets = {}
+ for species, group_dict in types.iteritems():
+ datasets[species] = {}
+ for group, type_list in group_dict.iteritems():
+ datasets[species][group] = {}
+ for type_name, type_full_name in type_list:
+ dataset_text = dataset_value = None
+ if type_name == "Phenotypes":
+ dataset_value = "%sPublish" % group
+ if group == 'MDP':
+ dataset_text = "Mouse Phenome Database"
else:
- datasetTxt = "%s Published Phenotypes" % cross
- datasetVal = "%sPublish" % cross
- outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'% (datasetTxt,datasetVal)
- datasetTotalResults.append(('%s'% datasetVal,'%s' % datasetTxt))
-
- tIndex = getIndex(searchArray=typeTotalResults,targetValue=typeVal)+1
- dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1
- outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex)
-
- # if group also exists in GenoFreeze table, then needs to add related Genotypes in database Array(dArr)
- cursor.execute("select GenoFreeze.Id from GenoFreeze, InbredSet where GenoFreeze.InbredSetId = InbredSet.Id and InbredSet.Name = '%s'" % cross)
- if (cursor.fetchall()):
- typeVal = "Genotypes"
- datasetTxt = "%s Genotypes" % cross
- datasetVal = "%sGeno" % cross
- outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'%(datasetTxt,datasetVal)
- typeTotalResults.append(('Genotypes','Genotypes'))
- datasetTotalResults.append(('%s'% datasetVal,'%s' % datasetTxt))
-
- tIndex = getIndex(searchArray=typeTotalResults,targetValue=typeVal)+1
- dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1
- outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex)
-
- # retrieve type(tissue) info based on group
- # if cross is equal to 'BXD', then need to seach for 'BXD' and 'BXD300' InbredSet
- if cross == "BXD":
- cross2 = "BXD', 'BXD300"
+ dataset_text = "%s Published Phenotypes" % group
+
+ elif type_name == "Genotypes":
+ dataset_value = "%sGeno" % group
+ dataset_text = "%s Genotypes" % group
+
+ if dataset_value:
+ datasets[species][group][type_name] = [(dataset_value, dataset_text)]
else:
- cross2 = cross
- cursor.execute("select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and InbredSet.Name in ('%s') and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeSetFreeze.public > %d order by Tissue.Name" % (cross2, webqtlConfig.PUBLICTHRESH))
- typeResults = cursor.fetchall()
- typeResultsNum = cursor.rowcount
-
- if typeResultsNum > 0:
- for typeItem in typeResults:
- typeVal = typeItem[0]
- tIndex = getIndex(searchArray=typeTotalResults, targetValue=typeVal)+1
- # retrieve database(dataset) info based on group(InbredSet) and type(Tissue)
- tissue = typeVal
- cursor.execute("select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and InbredSet.Name in ('%s') and Tissue.name = '%s' and ProbeSetFreeze.public > %d order by ProbeSetFreeze.CreateTime desc" % (cross2, tissue, webqtlConfig.PUBLICTHRESH))
- datasetResults = cursor.fetchall()
- datasetResultsNum = cursor.rowcount
-
- if datasetResultsNum > 0:
- for datasetItem in datasetResults:
- datasetVal = datasetItem[0]
- dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1
- outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex)
-
-# add 'All Phenotypes' option for 'Database' select menu
-# for 'All Species'option in 'Species' select menu, 'Database' select menu will show 'All Phenotypes' option
-outputDatabaseStr += '{txt:\'%s\',val:\'%s\'}];\n\n'%('All Phenotypes','_allPublish')
-datasetTotalResults.append(('_allPublish','All Phenotypes'))
-
-sIndex = getIndex(searchArray=speciesTotalResult,targetValue='All Species')+1
-gIndex = getIndex(searchArray=groupTotalResults, targetValue='all groups')+1
-tIndex = getIndex(searchArray=typeTotalResults,targetValue='Phenotypes')+1
-dIndex = getIndex(searchArray=datasetTotalResults, targetValue='_allPublish')+1
-outputLinkStr +='[%d,%d,%d,%d]];\n\n'%(sIndex,gIndex,tIndex,dIndex)
-
-# Combine sArr, gArr, tArr, dArr and lArr output string together
-outputStr = outputTimeStr+outputSpeciesStr+outputGroupStr+outputTypeStr+outputDatabaseStr+outputLinkStr
-outputStr +='''
-
-/*
-* function: based on different browser use, will have different initial actions;
-* Once the index.html page is loaded, this function will be called
-*/
-function initialDatasetSelection()
-{
- defaultSpecies =getDefaultValue('species');
- defaultSet =getDefaultValue('cross');
- defaultType =getDefaultValue('tissue');
- defaultDB =getDefaultValue('database');
-
- if (navigator.userAgent.indexOf('MSIE')>=0)
- {
- sOptions = fillOptionsForIE(null,defaultSpecies);
- var menu0 ="<SELECT NAME='species' ID='species' SIZE='1' onChange='fillOptions(\\"species\\");'>"+sOptions+"</Select>";
- document.getElementById('menu0').innerHTML = menu0;
-
- gOptions = fillOptionsForIE('species',defaultSet);
- var menu1 ="<Select NAME='cross' size=1 id='cross' onchange='fillOptions(\\"cross\\");'>"+gOptions+"</Select><input type=\\"button\\" class=\\"button\\" value=\\"Info\\" onCLick=\\"javascript:crossinfo();\\">";
- document.getElementById('menu1').innerHTML =menu1;
-
- tOptions = fillOptionsForIE('cross',defaultType);
- var menu2 ="<Select NAME='tissue' size=1 id='tissue' onchange='fillOptions(\\"tissue\\");'>"+tOptions+"</Select>";
- document.getElementById('menu2').innerHTML =menu2;
-
- dOptions = fillOptionsForIE('tissue',defaultDB);
- var menu3 ="<Select NAME='database' size=1 id='database'>"+dOptions+"</Select><input type=\\"button\\" class=\\"button\\" value=\\"Info\\" onCLick=\\"javascript:databaseinfo();\\">";
- document.getElementById('menu3').innerHTML =menu3;
-
- }else{
- fillOptions(null);
- }
- searchtip();
-}
-
-/*
-* input: selectObjId (designated select menu, such as species, cross, etc... )
-* defaultValue (default Value of species, cross,tissue or database)
-* function: special for IE browser,setting options value for select menu dynamically based on linkage array(lArr),
-* output: options string
-*/
-function fillOptionsForIE(selectObjId,defaultValue)
-{
- var options='';
- if(selectObjId==null)
- {
- var len = sArr.length;
- for (var i=1; i < len; i++) {
- // setting Species' option
- if( sArr[i].val==defaultValue){
- options =options+"<option selected=\\"selected\\" value='"+sArr[i].val+"'>"+sArr[i].txt+"</option>";
- }else{
- options =options+"<option value='"+sArr[i].val+"'>"+sArr[i].txt+"</option>";
- }
- }
- }else if(selectObjId=='species')
- {
- var speciesObj = document.getElementById('species');
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get group(cross) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&!Contains(arr,lArr[i][1]))
- {
- arr[idx++]=lArr[i][1];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("cross");
- for (var i=0; i < len; i++) {
- // setting Group's option
- if( gArr[arr[i]].val==defaultValue){
- options =options+"<option selected=\\"selected\\" value='"+gArr[arr[i]].val+"'>"+gArr[arr[i]].txt+"</option>";
- }else{
- options =options+"<option value='"+gArr[arr[i]].val+"'>"+gArr[arr[i]].txt+"</option>";
- }
-
- }
- }else if(selectObjId=='cross')
- {
- var speciesObj = document.getElementById('species');
- var groupObj = document.getElementById('cross');
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get type(tissue) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&!Contains(arr,lArr[i][2]))
- {
- arr[idx++]=lArr[i][2];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("tissue");
- for (var i=0; i < len; i++) {
- // setting Type's option
- if( tArr[arr[i]].val==defaultValue){
- options =options+"<option selected=\\"selected\\" value='"+tArr[arr[i]].val+"'>"+tArr[arr[i]].txt+"</option>";
- }else{
- options =options+"<option value='"+tArr[arr[i]].val+"'>"+tArr[arr[i]].txt+"</option>";
- }
- }
-
- }else if(selectObjId=='tissue')
- {
- var speciesObj = document.getElementById('species');
- var groupObj = document.getElementById('cross');
- var typeObj = document.getElementById('tissue');
-
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get dataset(database) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&lArr[i][2]==(getIndexByValue('tissue',typeObj.value)).toString()&&!Contains(arr,lArr[i][3]))
- {
- arr[idx++]=lArr[i][3];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("database");
- for (var i=0; i < len; i++) {
- // setting Database's option
- if( dArr[arr[i]].val==defaultValue){
- options =options+"<option SELECTED value='"+dArr[arr[i]].val+"'>"+dArr[arr[i]].txt+"</option>";
- }else{
- options =options+"<option value='"+dArr[arr[i]].val+"'>"+dArr[arr[i]].txt+"</option>";
- }
- }
- }
- return options;
-}
-/*
-* input: selectObjId (designated select menu, such as species, cross, etc... )
-* function: setting options value for select menu dynamically based on linkage array(lArr)
-* output: null
-*/
-function fillOptions(selectObjId)
-{
- if(selectObjId==null)
- {
-
- var speciesObj = document.getElementById('species');
- var len = sArr.length;
- for (var i=1; i < len; i++) {
- // setting Species' option
- speciesObj.options[i-1] = new Option(sArr[i].txt, sArr[i].val);
- }
- updateChocie('species');
-
- }else if(selectObjId=='species')
- {
- var speciesObj = document.getElementById('species');
- var groupObj = document.getElementById('cross');
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get group(cross) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&!Contains(arr,lArr[i][1]))
- {
- arr[idx++]=lArr[i][1];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("cross");
- for (var i=0; i < len; i++) {
- // setting Group's option
- groupObj.options[idx++] = new Option(gArr[arr[i]].txt, gArr[arr[i]].val);
- }
- updateChocie('cross');
-
- }else if(selectObjId=='cross')
- {
- var speciesObj = document.getElementById('species');
- var groupObj = document.getElementById('cross');
- var typeObj = document.getElementById('tissue');
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get type(tissue) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&!Contains(arr,lArr[i][2]))
- {
- arr[idx++]=lArr[i][2];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("tissue");
- for (var i=0; i < len; i++) {
- // setting Type's option
- typeObj.options[idx++] = new Option(tArr[arr[i]].txt, tArr[arr[i]].val);
- }
- updateChocie('tissue');
-
- }else if(selectObjId=='tissue')
- {
- var speciesObj = document.getElementById('species');
- var groupObj = document.getElementById('cross');
- var typeObj = document.getElementById('tissue');
- var databaseObj = document.getElementById('database');
-
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get dataset(database) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&lArr[i][2]==(getIndexByValue('tissue',typeObj.value)).toString()&&!Contains(arr,lArr[i][3]))
- {
- arr[idx++]=lArr[i][3];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("database");
- for (var i=0; i < len; i++) {
- // setting Database's option
- databaseObj.options[idx++] = new Option(dArr[arr[i]].txt, dArr[arr[i]].val);
- }
- updateChocie('database');
- }
-}
-
-/*
-* input: arr (targeted array); obj (targeted value)
-* function: check whether targeted array contains targeted value or not
-* output: return true, if array contains targeted value, otherwise return false
-*/
-function Contains(arr,obj) {
- var i = arr.length;
- while (i--) {
- if (arr[i] == obj) {
- return true;
- }
- }
- return false;
-}
-
-/*
-* input: selectObj (designated select menu, such as species, cross, etc... )
-* function: clear designated select menu's option
-* output: null
-*/
-function removeOptions(selectObj) {
- if (typeof selectObj != 'object'){
- selectObj = document.getElementById(selectObj);
- }
- var len = selectObj.options.length;
- for (var i=0; i < len; i++) {
- // clear current selection
- selectObj.options[0] = null;
- }
-}
-
-/*
-* input: selectObjId (designated select menu, such as species, cross, etc... )
-* Value: target value
-* function: retrieve Index info of target value in designated array
-* output: index info
-*/
-function getIndexByValue(selectObjId,val)
-{
- if(selectObjId=='species')
- {
- for(var i=1;i<sArr.length;i++){
- if(sArr[i].val==val)
- return i;
- }
- }else if(selectObjId=='cross')
- {
- for(var i=1;i<gArr.length;i++)
- if(gArr[i].val==val)
- return i;
- }else if(selectObjId=='tissue')
- {
- for(var i=1;i<tArr.length;i++)
- if(tArr[i].val==val)
- return i;
- }
- else return;
-}
-
-/*
-* input: objId (designated select menu, such as species, cross, etc... )
-* val(targeted value)
-* function: setting option's selected status for designated select menu based on target value, also update the following select menu in the main search page
-* output: return true if selected status has been set, otherwise return false.
-*/
-function setChoice(objId,val)
-{
- var Obj = document.getElementById(objId);
- var idx=-1;
-
- for(i=0;i<Obj.options.length;i++){
- if(Obj.options[i].value==val){
- idx=i;
- break;
- }
- }
-
- if(idx>=0){
- //setting option's selected status
- Obj.options[idx].selected=true;
- //update the following select menu
- fillOptions(objId);
- }else{
- Obj.options[0].selected=true;
- fillOptions(objId);
- }
-}
-
-// setting option's selected status based on default setting or cookie setting for Species, Group, Type and Database select menu in the main search page http://www.genenetwork.org/
-function updateChocie(selectObjId){
-
- if (selectObjId =='species')
- {
- defaultSpecies= getDefaultValue('species');
- //setting option's selected status
- setChoice('species',defaultSpecies);
- }else if (selectObjId =='cross')
- {
- defaultSet= getDefaultValue('cross');
- //setting option's selected status
- setChoice('cross',defaultSet);
- }else if (selectObjId =='tissue')
- {
- defaultType= getDefaultValue('tissue');
- //setting option's selected status
- setChoice('tissue',defaultType);
- }else if (selectObjId =='database')
- {
- defaultDB= getDefaultValue('database');
- //setting option's selected status
- setChoice('database',defaultDB);
- }
-}
-
-//get default value;if cookie exists, then use cookie value, otherwise use default value
-function getDefaultValue(selectObjId){
- //define default value
- var defaultSpecies = 'mouse'
- var defaultSet = 'BXD'
- var defaultType = 'Hippocampus'
- var defaultDB = 'HC_M2_0606_P'
-
- if (selectObjId =='species')
- {
- //if cookie exists, then use cookie value, otherwise use default value
- var cookieSpecies = getCookie('defaultSpecies');
- if(cookieSpecies)
- {
- defaultSpecies= cookieSpecies;
- }
- return defaultSpecies;
- }else if (selectObjId =='cross'){
- var cookieSet = getCookie('defaultSet');
- if(cookieSet){
- defaultSet= cookieSet;
- }
- return defaultSet;
- }else if (selectObjId =='tissue'){
- var cookieType = getCookie('defaultType');
- if(cookieType){
- defaultType= cookieType;
- }
- return defaultType;
- }else if (selectObjId =='database')
- {
- var cookieDB = getCookie('defaultDB');
- if(cookieDB){
- defaultDB= cookieDB;
- }
- return defaultDB;
- }
-
-}
-
-//setting default value into cookies for the dropdown menus: Species,Group, Type, and Database
-function setDefault(thisform){
-
- setCookie('cookieTest', 'cookieTest', 1);
- var cookieTest = getCookie('cookieTest');
- delCookie('cookieTest');
- if (cookieTest){
- var defaultSpecies = thisform.species.value;
- setCookie('defaultSpecies', defaultSpecies, 10);
- var defaultSet = thisform.cross.value;
- setCookie('defaultSet', defaultSet, 10);
- var defaultType = thisform.tissue.value;
- setCookie('defaultType', defaultType, 10);
- var defaultDB = thisform.database.value;
- setCookie('defaultDB', defaultDB, 10);
- updateChocie('species');
- updateChocie('cross');
- updateChocie('tissue');
- updateChocie('database');
- alert("The current settings are now your default");
- }
- else{
- alert("You need to enable Cookies in your browser.");
- }
-}
-
-'''
-# write all strings' info into selectDatasetMenu.js file
-fileHandler.write(outputStr)
-fileHandler.close()
+ Cursor.execute("""select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from
+ ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where
+ ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and Tissue.Name = %s
+ and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId =
+ InbredSet.Id and ProbeSetFreeze.public > %s order by
+ ProbeSetFreeze.CreateTime desc""", (type_name,
+ webqtlConfig.PUBLICTHRESH))
+ datasets[species][group][type_name] = Cursor.fetchall()
+
+ return datasets
+
+
+def main():
+ species = get_species()
+ groups = get_groups(species)
+ types = get_types(groups)
+ datasets = get_datasets(types)
+
+ species.append(('All Species', 'All Species'))
+ groups['All Species'] = [('All Groups', 'All Groups')]
+ types['All Species'] = {}
+ types['All Species']['All Groups'] = [('Phenotypes', 'Phenotypes')]
+ datasets['All Species'] = {}
+ datasets['All Species']['All Groups'] = {}
+ datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')]
+
+ data = dict(species=species,
+ groups=groups,
+ types=types,
+ datasets=datasets,
+ )
+
+ output_file = """../wqflask/static/new/javascript/dataset_menu_structure.json"""
+
+ with open(output_file, 'w') as fh:
+ json.dump(data, fh, indent=" ", sort_keys=True)
+
+
+if __name__ == '__main__':
+ main() \ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
new file mode 100644
index 00000000..d25d3cf5
--- /dev/null
+++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
@@ -0,0 +1,6792 @@
+{
+ "datasets": {
+ "All Species": {
+ "All Groups": {
+ "Phenotypes": [
+ [
+ "All Phenotypes",
+ "All Phenotypes"
+ ]
+ ]
+ }
+ },
+ "arabidopsis": {
+ "BayXSha": {
+ "Genotypes": [
+ [
+ "BayXShaGeno",
+ "BayXSha Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BayXShaPublish",
+ "BayXSha Published Phenotypes"
+ ]
+ ]
+ },
+ "ColXBur": {
+ "Genotypes": [
+ [
+ "ColXBurGeno",
+ "ColXBur Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "ColXBurPublish",
+ "ColXBur Published Phenotypes"
+ ]
+ ]
+ },
+ "ColXCvi": {
+ "Genotypes": [
+ [
+ "ColXCviGeno",
+ "ColXCvi Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "ColXCviPublish",
+ "ColXCvi Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "barley": {
+ "QSM": {
+ "Genotypes": [
+ [
+ "QSMGeno",
+ "QSM Genotypes"
+ ]
+ ],
+ "Leaf": [
+ [
+ "B1LI0809R",
+ "Barley1 Leaf INOC TTKS (Aug09) RMA"
+ ],
+ [
+ "B1LI0809M5",
+ "Barley1 Leaf INOC TTKS (Aug09) MAS5"
+ ],
+ [
+ "B1MI0809M5",
+ "Barley1 Leaf MOCK TTKS (Aug09) MAS5"
+ ],
+ [
+ "B1MI0809R",
+ "Barley1 Leaf MOCK TTKS (Aug09) RMA"
+ ],
+ [
+ "B30_K_1206_M",
+ "Barley1 Leaf MAS 5.0 SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_R",
+ "Barley1 Leaf gcRMA SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_Rn",
+ "Barley1 Leaf gcRMAn SCRI (Dec06)"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "QSMPublish",
+ "QSM Published Phenotypes"
+ ]
+ ]
+ },
+ "SXM": {
+ "Embryo": [
+ [
+ "B139_K_1206_R",
+ "Barley1 Embryo gcRMA SCRI (Dec06)"
+ ],
+ [
+ "B139_K_1206_M",
+ "Barley1 Embryo MAS 5.0 SCRI (Dec06)"
+ ],
+ [
+ "B150_K_0406_R",
+ "Barley1 Embryo0 gcRMA SCRI (Apr06)"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "SXMGeno",
+ "SXM Genotypes"
+ ]
+ ],
+ "Leaf": [
+ [
+ "B1LI0809R",
+ "Barley1 Leaf INOC TTKS (Aug09) RMA"
+ ],
+ [
+ "B1LI0809M5",
+ "Barley1 Leaf INOC TTKS (Aug09) MAS5"
+ ],
+ [
+ "B1MI0809M5",
+ "Barley1 Leaf MOCK TTKS (Aug09) MAS5"
+ ],
+ [
+ "B1MI0809R",
+ "Barley1 Leaf MOCK TTKS (Aug09) RMA"
+ ],
+ [
+ "B30_K_1206_M",
+ "Barley1 Leaf MAS 5.0 SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_R",
+ "Barley1 Leaf gcRMA SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_Rn",
+ "Barley1 Leaf gcRMAn SCRI (Dec06)"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "SXMPublish",
+ "SXM Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "drosophila": {
+ "DGRP": {
+ "Genotypes": [
+ [
+ "DGRPGeno",
+ "DGRP Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "DGRPPublish",
+ "DGRP Published Phenotypes"
+ ]
+ ],
+ "Whole Body": [
+ [
+ "NCSU_DrosWB_LC_RMA_0111",
+ "NCSU Drosophila Whole Body (Jan11) RMA"
+ ],
+ [
+ "UAB_DrosWB_LC_RMA_1009",
+ "UAB Whole body D.m. mRNA control (Oct09) RMA"
+ ],
+ [
+ "UAB_DrosWB_LE_RMA_1009",
+ "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA"
+ ]
+ ]
+ },
+ "Oregon-R_x_2b3": {
+ "Genotypes": [
+ [
+ "Oregon-R_x_2b3Geno",
+ "Oregon-R_x_2b3 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "Oregon-R_x_2b3Publish",
+ "Oregon-R_x_2b3 Published Phenotypes"
+ ]
+ ],
+ "Whole Body": [
+ [
+ "NCSU_DrosWB_LC_RMA_0111",
+ "NCSU Drosophila Whole Body (Jan11) RMA"
+ ],
+ [
+ "UAB_DrosWB_LC_RMA_1009",
+ "UAB Whole body D.m. mRNA control (Oct09) RMA"
+ ],
+ [
+ "UAB_DrosWB_LE_RMA_1009",
+ "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA"
+ ]
+ ]
+ }
+ },
+ "human": {
+ "AD-cases-controls": {
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "AD-cases-controlsGeno",
+ "AD-cases-controls Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "AD-cases-controlsPublish",
+ "AD-cases-controls Published Phenotypes"
+ ]
+ ]
+ },
+ "AD-cases-controls-Myers": {
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "AD-cases-controls-MyersGeno",
+ "AD-cases-controls-Myers Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "AD-cases-controls-MyersPublish",
+ "AD-cases-controls-Myers Published Phenotypes"
+ ]
+ ]
+ },
+ "CANDLE": {
+ "Genotypes": [
+ [
+ "CANDLEGeno",
+ "CANDLE Genotypes"
+ ]
+ ],
+ "Newborn Cord Blood": [
+ [
+ "CANDLE_NB_0711",
+ "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "CANDLEPublish",
+ "CANDLE Published Phenotypes"
+ ]
+ ]
+ },
+ "CEPH-2004": {
+ "Genotypes": [
+ [
+ "CEPH-2004Geno",
+ "CEPH-2004 Genotypes"
+ ]
+ ],
+ "Lymphoblast B-cell": [
+ [
+ "UT_CEPH_RankInv0909",
+ "UTHSC CEPH B-cells Illumina (Sep09) RankInv"
+ ],
+ [
+ "Human_1008",
+ "Monks CEPH B-cells Agilent (Dec04) Log10Ratio"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "CEPH-2004Publish",
+ "CEPH-2004 Published Phenotypes"
+ ]
+ ]
+ },
+ "HB": {
+ "Cerebellum": [
+ [
+ "HBTRC-MLC_0611",
+ "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_N_0611",
+ "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_AD_0611",
+ "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_HD_0611",
+ "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "GCB_M2_0505_M",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5"
+ ],
+ [
+ "GCB_M2_0505_R",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA"
+ ],
+ [
+ "GCB_M2_0505_P",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN"
+ ],
+ [
+ "CB_M_0305_R",
+ "SJUT Cerebellum mRNA M430 (Mar05) RMA"
+ ],
+ [
+ "CB_M_0305_M",
+ "SJUT Cerebellum mRNA M430 (Mar05) MAS5"
+ ],
+ [
+ "CB_M_0305_P",
+ "SJUT Cerebellum mRNA M430 (Mar05) PDNN"
+ ],
+ [
+ "CB_M_1004_R",
+ "SJUT Cerebellum mRNA M430 (Oct04) RMA"
+ ],
+ [
+ "CB_M_1004_M",
+ "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
+ ],
+ [
+ "CB_M_1004_P",
+ "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
+ ],
+ [
+ "CB_M_1003_M",
+ "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "HBGeno",
+ "HB Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HBPublish",
+ "HB Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
+ [
+ "HBTRC-MLPFC_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_N_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_AD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_HD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "INIA_MacFas_Pf_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_PfE_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSal_1006_R",
+ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
+ [
+ "VCUEtOH_1206_R",
+ "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCUSal_1206_R",
+ "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCU_PF_Air_0111_R",
+ "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_Et_0111_R",
+ "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_AvE_0111_Ss",
+ "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
+ ],
+ [
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
+ ],
+ [
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
+ ],
+ [
+ "VCUSal_0806_R",
+ "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
+ ]
+ ],
+ "Primary Visual Cortex": [
+ [
+ "KIN_YSM_V1C_0711",
+ "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "HBTRC-MLVC_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_N_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_AD_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_HD_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
+ ]
+ ]
+ },
+ "HLC": {
+ "Genotypes": [
+ [
+ "HLCGeno",
+ "HLC Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HLCPublish",
+ "HLC Published Phenotypes"
+ ]
+ ]
+ },
+ "HSB": {
+ "Amygdala": [
+ [
+ "KIN_YSM_AMY_0711",
+ "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "INIA_AmgCoh_0311",
+ "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_M_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_F_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
+ ],
+ [
+ "INIA_MacFas_AMGc_RMA_0110",
+ "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_AMGe_RMA_0110",
+ "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
+ ]
+ ],
+ "Caudal Ganglionic Eminence": [
+ [
+ "KIN_YSM_CGE_0711",
+ "KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Cerebellar Cortex": [
+ [
+ "KIN_YSM_CBC_0711",
+ "KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Diencephalon": [
+ [
+ "KIN_YSM_DIE_0711",
+ "KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Dorsal Thalamus": [
+ [
+ "KIN_YSM_DTH_0711",
+ "KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Dorsolateral Prefrontal Cortex": [
+ [
+ "KIN_YSM_DFC_0711",
+ "KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Frontal Cerebral Wall": [
+ [
+ "KIN_YSM_FC_0711",
+ "KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "HSBGeno",
+ "HSB Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Inferior Temporal Cortex": [
+ [
+ "KIN_YSM_ITC_0711",
+ "KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Lateral Ganglionic Eminence": [
+ [
+ "KIN_YSM_LGE_0711",
+ "KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Medial Ganglionic Eminence": [
+ [
+ "KIN_YSM_MGE_0711",
+ "KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Medial Prefrontal Cortex": [
+ [
+ "KIN_YSM_MFC_0711",
+ "KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Mediodorsal Nucleus of Thalamus": [
+ [
+ "KIN_YSM_MD_0711",
+ "KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Occipital Cerebral Wall": [
+ [
+ "KIN_YSM_OC_0711",
+ "KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Orbital Prefrontal Cortex": [
+ [
+ "KIN_YSM_OFC_0711",
+ "KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Parietal Cerebral Wall": [
+ [
+ "KIN_YSM_PC_0711",
+ "KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HSBPublish",
+ "HSB Published Phenotypes"
+ ]
+ ],
+ "Posterior Inferior Parietal Cortex": [
+ [
+ "KIN_YSM_IPC_0711",
+ "KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Posterior Superior Temporal Cortex": [
+ [
+ "KIN_YSM_STC_0711",
+ "KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Primary Auditory (A1) Cortex": [
+ [
+ "KIN_YSM_A1C_0711",
+ "KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Primary Motor (M1) Cortex": [
+ [
+ "KIN_YSM_M1C_0711",
+ "KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Primary Somatosensory (S1) Cortex": [
+ [
+ "KIN_YSM_S1C_0711",
+ "KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Primary Visual Cortex": [
+ [
+ "KIN_YSM_V1C_0711",
+ "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "HBTRC-MLVC_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_N_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_AD_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_HD_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
+ ]
+ ],
+ "Striatum": [
+ [
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "KIN_YSM_STR_0711",
+ "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "OHSU_HS-CC_ILMStr_0211",
+ "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
+ ],
+ [
+ "UTHSC_Striatum_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
+ ],
+ [
+ "UTHSC_Str_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
+ ],
+ [
+ "UTHSC_1107_RankInv",
+ "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
+ ],
+ [
+ "SA_M2_0905_P",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ ],
+ [
+ "SA_M2_0905_M",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
+ ],
+ [
+ "SA_M2_0905_R",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
+ ],
+ [
+ "SA_M2_0405_MC",
+ "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
+ ],
+ [
+ "SA_M2_0405_RC",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
+ ],
+ [
+ "SA_M2_0405_PC",
+ "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
+ ],
+ [
+ "SA_M2_0405_SS",
+ "HBP Rosen Striatum M430V2 (Apr05) SScore"
+ ],
+ [
+ "SA_M2_0405_RR",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
+ ],
+ [
+ "Striatum_Exon_0209",
+ "HQF Striatum Exon (Feb09) RMA"
+ ],
+ [
+ "DevStriatum_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ],
+ "Temporal Cerebral Wall": [
+ [
+ "KIN_YSM_TC_0711",
+ "KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Upper (Rostral) Rhombic Lip": [
+ [
+ "KIN_YSM_URL_0711",
+ "KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Ventral Forebrain": [
+ [
+ "KIN_YSM_VF_0711",
+ "KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Ventrolateral Prefrontal Cortex": [
+ [
+ "KIN_YSM_VFC_0711",
+ "KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ]
+ }
+ },
+ "macaque monkey": {
+ "Macaca-fasicularis": {
+ "Amygdala": [
+ [
+ "KIN_YSM_AMY_0711",
+ "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "INIA_AmgCoh_0311",
+ "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_M_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_F_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
+ ],
+ [
+ "INIA_MacFas_AMGc_RMA_0110",
+ "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_AMGe_RMA_0110",
+ "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
+ ]
+ ],
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "Macaca-fasicularisGeno",
+ "Macaca-fasicularis Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Nucleus Accumbens": [
+ [
+ "INIA_MacFas_Ac_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_Ae_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSalo_1007_R",
+ "VCU BXD NA Sal M430 2.0 (Oct07) RMA"
+ ],
+ [
+ "VCUEtOH_1007_R",
+ "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **"
+ ],
+ [
+ "VCUSal_1007_R",
+ "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "Macaca-fasicularisPublish",
+ "Macaca-fasicularis Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
+ [
+ "HBTRC-MLPFC_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_N_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_AD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_HD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "INIA_MacFas_Pf_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_PfE_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSal_1006_R",
+ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
+ [
+ "VCUEtOH_1206_R",
+ "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCUSal_1206_R",
+ "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCU_PF_Air_0111_R",
+ "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_Et_0111_R",
+ "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_AvE_0111_Ss",
+ "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
+ ],
+ [
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
+ ],
+ [
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
+ ],
+ [
+ "VCUSal_0806_R",
+ "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
+ ]
+ ]
+ }
+ },
+ "mouse": {
+ "AKXD": {
+ "Genotypes": [
+ [
+ "AKXDGeno",
+ "AKXD Genotypes"
+ ]
+ ],
+ "Mammary Tumors": [
+ [
+ "NCI_Mam_Tum_RMA_0409",
+ "NCI Mammary M430v2 (Apr09) RMA"
+ ],
+ [
+ "NCI_Agil_Mam_Tum_RMA_0409",
+ "NCI Mammary LMT miRNA v2 (Apr09) RMA"
+ ],
+ [
+ "MA_M_0704_R",
+ "NCI Mammary mRNA M430 (July04) RMA"
+ ],
+ [
+ "MA_M_0704_M",
+ "NCI Mammary mRNA M430 (July04) MAS5"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "AKXDPublish",
+ "AKXD Published Phenotypes"
+ ]
+ ]
+ },
+ "AXBXA": {
+ "Eye": [
+ [
+ "Eye_AXBXA_1008_RankInv",
+ "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
+ ],
+ [
+ "Eye_M2_0908_R",
+ "Eye M430v2 (Sep08) RMA"
+ ],
+ [
+ "Eye_M2_0908_R_NB",
+ "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_ND",
+ "Eye M430v2 WT Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_WTWT",
+ "Eye M430v2 WT WT (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_WT",
+ "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_MT",
+ "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "BXD_GLA_0911",
+ "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
+ ],
+ [
+ "UIOWA_Eye_RMA_0906",
+ "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "AXBXAGeno",
+ "AXBXA Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "AXBXAPublish",
+ "AXBXA Published Phenotypes"
+ ]
+ ]
+ },
+ "B6BTBRF2": {
+ "Genotypes": [
+ [
+ "B6BTBRF2Geno",
+ "B6BTBRF2 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "B6BTBRF2Publish",
+ "B6BTBRF2 Published Phenotypes"
+ ]
+ ]
+ },
+ "B6D2F2": {
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "B6D2F2Geno",
+ "B6D2F2 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "B6D2F2Publish",
+ "B6D2F2 Published Phenotypes"
+ ]
+ ]
+ },
+ "BDF2-1999": {
+ "Genotypes": [
+ [
+ "BDF2-1999Geno",
+ "BDF2-1999 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BDF2-1999Publish",
+ "BDF2-1999 Published Phenotypes"
+ ]
+ ]
+ },
+ "BDF2-2005": {
+ "Genotypes": [
+ [
+ "BDF2-2005Geno",
+ "BDF2-2005 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BDF2-2005Publish",
+ "BDF2-2005 Published Phenotypes"
+ ]
+ ],
+ "Striatum": [
+ [
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "KIN_YSM_STR_0711",
+ "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "OHSU_HS-CC_ILMStr_0211",
+ "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
+ ],
+ [
+ "UTHSC_Striatum_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
+ ],
+ [
+ "UTHSC_Str_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
+ ],
+ [
+ "UTHSC_1107_RankInv",
+ "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
+ ],
+ [
+ "SA_M2_0905_P",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ ],
+ [
+ "SA_M2_0905_M",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
+ ],
+ [
+ "SA_M2_0905_R",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
+ ],
+ [
+ "SA_M2_0405_MC",
+ "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
+ ],
+ [
+ "SA_M2_0405_RC",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
+ ],
+ [
+ "SA_M2_0405_PC",
+ "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
+ ],
+ [
+ "SA_M2_0405_SS",
+ "HBP Rosen Striatum M430V2 (Apr05) SScore"
+ ],
+ [
+ "SA_M2_0405_RR",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
+ ],
+ [
+ "Striatum_Exon_0209",
+ "HQF Striatum Exon (Feb09) RMA"
+ ],
+ [
+ "DevStriatum_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ]
+ },
+ "BHF2": {
+ "Adipose": [
+ [
+ "UCLA_BHF2_ADIPOSE_MALE",
+ "UCLA BHF2 Adipose Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
+ "UCLA CTB6B6CTF2 Adipose Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_FEMALE",
+ "UCLA BHF2 Adipose Female mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
+ "UCLA CTB6B6CTF2 Adipose Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_MALE",
+ "UCLA BHHBF2 Adipose Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_FEMALE",
+ "UCLA BHHBF2 Adipose Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_2005",
+ "UCLA BHHBF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_2005",
+ "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_0605",
+ "UCLA BHF2 Adipose (June05) mlratio"
+ ]
+ ],
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "BHF2Geno",
+ "BHF2 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Muscle": [
+ [
+ "EPFLMouseMuscleRMA1211",
+ "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleCDRMA1211",
+ "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleHFDRMA1211",
+ "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
+ "UCLA CTB6B6CTF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_MALE",
+ "UCLA CTB6B6CTF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_FEMALE",
+ "UCLA BHHBF2 Muscle Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_MALE",
+ "UCLA BHHBF2 Muscle Male Only"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_FEMALE",
+ "UCLA BHF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_2005",
+ "UCLA BHHBF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_2005",
+ "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_0605",
+ "UCLA BHF2 Muscle (June05) mlratio **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BHF2Publish",
+ "BHF2 Published Phenotypes"
+ ]
+ ]
+ },
+ "BHHBF2": {
+ "Adipose": [
+ [
+ "UCLA_BHF2_ADIPOSE_MALE",
+ "UCLA BHF2 Adipose Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
+ "UCLA CTB6B6CTF2 Adipose Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_FEMALE",
+ "UCLA BHF2 Adipose Female mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
+ "UCLA CTB6B6CTF2 Adipose Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_MALE",
+ "UCLA BHHBF2 Adipose Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_FEMALE",
+ "UCLA BHHBF2 Adipose Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_2005",
+ "UCLA BHHBF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_2005",
+ "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_0605",
+ "UCLA BHF2 Adipose (June05) mlratio"
+ ]
+ ],
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "BHHBF2Geno",
+ "BHHBF2 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Muscle": [
+ [
+ "EPFLMouseMuscleRMA1211",
+ "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleCDRMA1211",
+ "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleHFDRMA1211",
+ "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
+ "UCLA CTB6B6CTF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_MALE",
+ "UCLA CTB6B6CTF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_FEMALE",
+ "UCLA BHHBF2 Muscle Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_MALE",
+ "UCLA BHHBF2 Muscle Male Only"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_FEMALE",
+ "UCLA BHF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_2005",
+ "UCLA BHHBF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_2005",
+ "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_0605",
+ "UCLA BHF2 Muscle (June05) mlratio **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BHHBF2Publish",
+ "BHHBF2 Published Phenotypes"
+ ]
+ ]
+ },
+ "BXD": {
+ "Amygdala": [
+ [
+ "KIN_YSM_AMY_0711",
+ "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "INIA_AmgCoh_0311",
+ "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_M_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_F_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
+ ],
+ [
+ "INIA_MacFas_AMGc_RMA_0110",
+ "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_AMGe_RMA_0110",
+ "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
+ ]
+ ],
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Cartilage": [
+ [
+ "UCLA_BXDBXH_CARTILAGE_V2",
+ "UCLA BXD and BXH Cartilage v2"
+ ],
+ [
+ "UCLA_BXHBXD_CARTILAGE_V2",
+ "UCLA BXH and BXD Cartilage v2"
+ ],
+ [
+ "UCLA_BXDBXH_CARTILAGE",
+ "UCLA BXD and BXH Cartilage"
+ ],
+ [
+ "UCLA_BXHBXD_CARTILAGE",
+ "UCLA BXH and BXD Cartilage"
+ ],
+ [
+ "UCLA_BXD_CARTILAGE",
+ "UCLA BXD Cartilage"
+ ],
+ [
+ "UCLA_BXH_CARTILAGE",
+ "UCLA BXH Cartilage"
+ ]
+ ],
+ "Cerebellum": [
+ [
+ "HBTRC-MLC_0611",
+ "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_N_0611",
+ "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_AD_0611",
+ "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_HD_0611",
+ "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "GCB_M2_0505_M",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5"
+ ],
+ [
+ "GCB_M2_0505_R",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA"
+ ],
+ [
+ "GCB_M2_0505_P",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN"
+ ],
+ [
+ "CB_M_0305_R",
+ "SJUT Cerebellum mRNA M430 (Mar05) RMA"
+ ],
+ [
+ "CB_M_0305_M",
+ "SJUT Cerebellum mRNA M430 (Mar05) MAS5"
+ ],
+ [
+ "CB_M_0305_P",
+ "SJUT Cerebellum mRNA M430 (Mar05) PDNN"
+ ],
+ [
+ "CB_M_1004_R",
+ "SJUT Cerebellum mRNA M430 (Oct04) RMA"
+ ],
+ [
+ "CB_M_1004_M",
+ "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
+ ],
+ [
+ "CB_M_1004_P",
+ "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
+ ],
+ [
+ "CB_M_1003_M",
+ "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
+ ]
+ ],
+ "Eye": [
+ [
+ "Eye_AXBXA_1008_RankInv",
+ "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
+ ],
+ [
+ "Eye_M2_0908_R",
+ "Eye M430v2 (Sep08) RMA"
+ ],
+ [
+ "Eye_M2_0908_R_NB",
+ "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_ND",
+ "Eye M430v2 WT Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_WTWT",
+ "Eye M430v2 WT WT (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_WT",
+ "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_MT",
+ "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "BXD_GLA_0911",
+ "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
+ ],
+ [
+ "UIOWA_Eye_RMA_0906",
+ "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "BXDGeno",
+ "BXD Genotypes"
+ ]
+ ],
+ "Hematopoietic Cells": [
+ [
+ "UMCG_0907_HemaStem_ori",
+ "UMCG Stem Cells ILM6v1.1 (Apr09) original"
+ ],
+ [
+ "UMCG_0907_HemaStem",
+ "UMCG Stem Cells ILM6v1.1 (Apr09) transformed"
+ ],
+ [
+ "UMCG_0907_Pro_ori",
+ "UMCG Progenitor Cells ILM6v1.1 (Apr09) original"
+ ],
+ [
+ "UMCG_0907_Pro",
+ "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed"
+ ],
+ [
+ "UMCG_0907_Eryth_ori",
+ "UMCG Erythroid Cells ILM6v1.1 (Apr09) original"
+ ],
+ [
+ "UMCG_0907_Eryth",
+ "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed"
+ ],
+ [
+ "UMCG_0907_Myeloid_ori",
+ "UMCG Myeloid Cells ILM6v1.1 (Apr09) original"
+ ],
+ [
+ "UMCG_0907_Myeloid",
+ "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed"
+ ],
+ [
+ "HC_U_0304_R",
+ "GNF Stem Cells U74Av2 (Mar04) RMA"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Hypothalamus": [
+ [
+ "INIA_Hyp_RMA_1110",
+ "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)"
+ ],
+ [
+ "INIA_Hyp_M_RMA_1110",
+ "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male"
+ ],
+ [
+ "INIA_Hyp_F_RMA_1110",
+ "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female"
+ ]
+ ],
+ "Kidney": [
+ [
+ "MA_M2F_0706_R",
+ "Mouse kidney M430v2 Female (Aug06) RMA"
+ ],
+ [
+ "MA_M2M_0706_R",
+ "Mouse kidney M430v2 Male (Aug06) RMA"
+ ],
+ [
+ "MA_M2_0806_R",
+ "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
+ ],
+ [
+ "MA_M2_0806_P",
+ "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
+ ],
+ [
+ "MA_M2_0706_P",
+ "Mouse Kidney M430v2 (Jul06) PDNN"
+ ],
+ [
+ "MA_M2_0706_R",
+ "Mouse Kidney M430v2 (Jul06) RMA"
+ ],
+ [
+ "KI_2A_0405_M",
+ "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
+ ],
+ [
+ "KI_2A_0405_Rz",
+ "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
+ ],
+ [
+ "KI_2A_0405_R",
+ "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
+ ]
+ ],
+ "Leucocytes": [
+ [
+ "Illum_BXD_PBL_1108",
+ "UWA Illumina PBL (Nov08) RSN **"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Lung": [
+ [
+ "OXUKHS_ILMLung_RI0510",
+ "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
+ ],
+ [
+ "HZI_0408_R",
+ "HZI Lung M430v2 (Apr08) RMA"
+ ],
+ [
+ "HZI_0408_M",
+ "HZI Lung M430v2 (Apr08) MAS5"
+ ]
+ ],
+ "Midbrain": [
+ [
+ "VUBXDMouseMidBrainQ0212",
+ "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (Feb12) Quantile"
+ ]
+ ],
+ "Muscle": [
+ [
+ "EPFLMouseMuscleRMA1211",
+ "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleCDRMA1211",
+ "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleHFDRMA1211",
+ "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
+ "UCLA CTB6B6CTF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_MALE",
+ "UCLA CTB6B6CTF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_FEMALE",
+ "UCLA BHHBF2 Muscle Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_MALE",
+ "UCLA BHHBF2 Muscle Male Only"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_FEMALE",
+ "UCLA BHF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_2005",
+ "UCLA BHHBF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_2005",
+ "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_0605",
+ "UCLA BHF2 Muscle (June05) mlratio **"
+ ]
+ ],
+ "Neocortex": [
+ [
+ "DevNeocortex_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevNeocortex_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "HQFNeoc_1210v2_RankInv",
+ "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv"
+ ],
+ [
+ "HQFNeoc_1210_RankInv",
+ "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv"
+ ],
+ [
+ "HQFNeoc_0208_RankInv",
+ "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv"
+ ],
+ [
+ "DevNeocortex_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevNeocortex_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ],
+ "Nucleus Accumbens": [
+ [
+ "INIA_MacFas_Ac_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_Ae_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSalo_1007_R",
+ "VCU BXD NA Sal M430 2.0 (Oct07) RMA"
+ ],
+ [
+ "VCUEtOH_1007_R",
+ "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **"
+ ],
+ [
+ "VCUSal_1007_R",
+ "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BXDPublish",
+ "BXD Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
+ [
+ "HBTRC-MLPFC_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_N_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_AD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_HD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "INIA_MacFas_Pf_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_PfE_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSal_1006_R",
+ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
+ [
+ "VCUEtOH_1206_R",
+ "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCUSal_1206_R",
+ "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCU_PF_Air_0111_R",
+ "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_Et_0111_R",
+ "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_AvE_0111_Ss",
+ "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
+ ],
+ [
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
+ ],
+ [
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
+ ],
+ [
+ "VCUSal_0806_R",
+ "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
+ ]
+ ],
+ "Retina": [
+ [
+ "Illum_Retina_BXD_RankInv0410",
+ "HEI Retina Illumina V6.2 (April 2010) RankInv"
+ ],
+ [
+ "B6D2ONCILM_0412",
+ "B6D2 ONC Illumina v6.1 (Apr12) RankInv **"
+ ],
+ [
+ "ONCRetILM6_0412",
+ "ONC Retina Illumina V6.2 (Apr12) RankInv **"
+ ],
+ [
+ "G2HEIONCRetILM6_0911",
+ "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
+ ],
+ [
+ "HEIONCRetILM6_0911",
+ "HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
+ ],
+ [
+ "HEIONCvsCRetILM6_0911",
+ "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **"
+ ],
+ [
+ "ILM_Retina_BXD_F_RankInv1210",
+ "HEI Retina Females Illumina V6.2 (Dec10) RankInv **"
+ ],
+ [
+ "ILM_Retina_BXD_M_RankInv1210",
+ "HEI Retina Males Illumina V6.2 (Dec10) RankInv **"
+ ],
+ [
+ "ILM_Retina_BXD_FM_RankInv1210",
+ "HEI Retina F-M Illumina V6.2 (Dec10) RankInv **"
+ ],
+ [
+ "G2NEI_ILM_Retina_BXD_RI0410",
+ "G2NEI Retina Illumina V6.2 (April 2010) RankInv **"
+ ]
+ ],
+ "Spleen": [
+ [
+ "UTHSC_SPL_RMA_1210",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
+ ],
+ [
+ "UTHSC_SPL_RMA_1010",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
+ ],
+ [
+ "IoP_SPL_RMA_0509",
+ "IoP Affy MOE 430v2 Spleen (May09) RMA"
+ ],
+ [
+ "Illum_BXD_Spl_1108",
+ "UWA Illumina Spleen (Nov08) RSN **"
+ ],
+ [
+ "UTK_BXDSpl_VST_0110",
+ "UTK Spleen ILM6.1 (Jan10) VST"
+ ],
+ [
+ "STSPL_1107_R",
+ "Stuart Spleen M430v2 (Nov07) RMA"
+ ]
+ ],
+ "Striatum": [
+ [
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "KIN_YSM_STR_0711",
+ "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "OHSU_HS-CC_ILMStr_0211",
+ "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
+ ],
+ [
+ "UTHSC_Striatum_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
+ ],
+ [
+ "UTHSC_Str_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
+ ],
+ [
+ "UTHSC_1107_RankInv",
+ "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
+ ],
+ [
+ "SA_M2_0905_P",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ ],
+ [
+ "SA_M2_0905_M",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
+ ],
+ [
+ "SA_M2_0905_R",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
+ ],
+ [
+ "SA_M2_0405_MC",
+ "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
+ ],
+ [
+ "SA_M2_0405_RC",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
+ ],
+ [
+ "SA_M2_0405_PC",
+ "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
+ ],
+ [
+ "SA_M2_0405_SS",
+ "HBP Rosen Striatum M430V2 (Apr05) SScore"
+ ],
+ [
+ "SA_M2_0405_RR",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
+ ],
+ [
+ "Striatum_Exon_0209",
+ "HQF Striatum Exon (Feb09) RMA"
+ ],
+ [
+ "DevStriatum_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ],
+ "T Cell (helper)": [
+ [
+ "RTHC_0211_R",
+ "HZI Thelp M430v2 (Feb11) RMA"
+ ]
+ ],
+ "T Cell (regulatory)": [
+ [
+ "RTC_1106_R",
+ "HZI Treg M430v2 (Feb11) RMA"
+ ]
+ ],
+ "Thymus": [
+ [
+ "Illum_BXD_Thy_1108",
+ "UWA Illumina Thymus (Nov08) RSN **"
+ ]
+ ],
+ "Ventral Tegmental Area": [
+ [
+ "VCUEtvsSal_0609_R",
+ "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **"
+ ],
+ [
+ "VCUEtOH_0609_R",
+ "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **"
+ ],
+ [
+ "VCUSal_0609_R",
+ "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **"
+ ]
+ ]
+ },
+ "BXH": {
+ "Cartilage": [
+ [
+ "UCLA_BXDBXH_CARTILAGE_V2",
+ "UCLA BXD and BXH Cartilage v2"
+ ],
+ [
+ "UCLA_BXHBXD_CARTILAGE_V2",
+ "UCLA BXH and BXD Cartilage v2"
+ ],
+ [
+ "UCLA_BXDBXH_CARTILAGE",
+ "UCLA BXD and BXH Cartilage"
+ ],
+ [
+ "UCLA_BXHBXD_CARTILAGE",
+ "UCLA BXH and BXD Cartilage"
+ ],
+ [
+ "UCLA_BXD_CARTILAGE",
+ "UCLA BXD Cartilage"
+ ],
+ [
+ "UCLA_BXH_CARTILAGE",
+ "UCLA BXH Cartilage"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "BXHGeno",
+ "BXH Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BXHPublish",
+ "BXH Published Phenotypes"
+ ]
+ ]
+ },
+ "CTB6F2": {
+ "Adipose": [
+ [
+ "UCLA_BHF2_ADIPOSE_MALE",
+ "UCLA BHF2 Adipose Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
+ "UCLA CTB6B6CTF2 Adipose Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_FEMALE",
+ "UCLA BHF2 Adipose Female mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
+ "UCLA CTB6B6CTF2 Adipose Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_MALE",
+ "UCLA BHHBF2 Adipose Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_FEMALE",
+ "UCLA BHHBF2 Adipose Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_2005",
+ "UCLA BHHBF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_2005",
+ "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_0605",
+ "UCLA BHF2 Adipose (June05) mlratio"
+ ]
+ ],
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "CTB6F2Geno",
+ "CTB6F2 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Muscle": [
+ [
+ "EPFLMouseMuscleRMA1211",
+ "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleCDRMA1211",
+ "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleHFDRMA1211",
+ "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
+ "UCLA CTB6B6CTF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_MALE",
+ "UCLA CTB6B6CTF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_FEMALE",
+ "UCLA BHHBF2 Muscle Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_MALE",
+ "UCLA BHHBF2 Muscle Male Only"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_FEMALE",
+ "UCLA BHF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_2005",
+ "UCLA BHHBF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_2005",
+ "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_0605",
+ "UCLA BHF2 Muscle (June05) mlratio **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "CTB6F2Publish",
+ "CTB6F2 Published Phenotypes"
+ ]
+ ]
+ },
+ "CXB": {
+ "Genotypes": [
+ [
+ "CXBGeno",
+ "CXB Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "CXBPublish",
+ "CXB Published Phenotypes"
+ ]
+ ],
+ "Spleen": [
+ [
+ "UTHSC_SPL_RMA_1210",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
+ ],
+ [
+ "UTHSC_SPL_RMA_1010",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
+ ],
+ [
+ "IoP_SPL_RMA_0509",
+ "IoP Affy MOE 430v2 Spleen (May09) RMA"
+ ],
+ [
+ "Illum_BXD_Spl_1108",
+ "UWA Illumina Spleen (Nov08) RSN **"
+ ],
+ [
+ "UTK_BXDSpl_VST_0110",
+ "UTK Spleen ILM6.1 (Jan10) VST"
+ ],
+ [
+ "STSPL_1107_R",
+ "Stuart Spleen M430v2 (Nov07) RMA"
+ ]
+ ]
+ },
+ "HS": {
+ "Genotypes": [
+ [
+ "HSGeno",
+ "HS Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Lung": [
+ [
+ "OXUKHS_ILMLung_RI0510",
+ "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
+ ],
+ [
+ "HZI_0408_R",
+ "HZI Lung M430v2 (Apr08) RMA"
+ ],
+ [
+ "HZI_0408_M",
+ "HZI Lung M430v2 (Apr08) MAS5"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HSPublish",
+ "HS Published Phenotypes"
+ ]
+ ]
+ },
+ "HS-CC": {
+ "Genotypes": [
+ [
+ "HS-CCGeno",
+ "HS-CC Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HS-CCPublish",
+ "HS-CC Published Phenotypes"
+ ]
+ ],
+ "Striatum": [
+ [
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "KIN_YSM_STR_0711",
+ "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "OHSU_HS-CC_ILMStr_0211",
+ "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
+ ],
+ [
+ "UTHSC_Striatum_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
+ ],
+ [
+ "UTHSC_Str_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
+ ],
+ [
+ "UTHSC_1107_RankInv",
+ "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
+ ],
+ [
+ "SA_M2_0905_P",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ ],
+ [
+ "SA_M2_0905_M",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
+ ],
+ [
+ "SA_M2_0905_R",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
+ ],
+ [
+ "SA_M2_0405_MC",
+ "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
+ ],
+ [
+ "SA_M2_0405_RC",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
+ ],
+ [
+ "SA_M2_0405_PC",
+ "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
+ ],
+ [
+ "SA_M2_0405_SS",
+ "HBP Rosen Striatum M430V2 (Apr05) SScore"
+ ],
+ [
+ "SA_M2_0405_RR",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
+ ],
+ [
+ "Striatum_Exon_0209",
+ "HQF Striatum Exon (Feb09) RMA"
+ ],
+ [
+ "DevStriatum_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ]
+ },
+ "LXS": {
+ "Genotypes": [
+ [
+ "LXSGeno",
+ "LXS Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "LXSPublish",
+ "LXS Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
+ [
+ "HBTRC-MLPFC_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_N_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_AD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_HD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "INIA_MacFas_Pf_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_PfE_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSal_1006_R",
+ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
+ [
+ "VCUEtOH_1206_R",
+ "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCUSal_1206_R",
+ "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCU_PF_Air_0111_R",
+ "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_Et_0111_R",
+ "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_AvE_0111_Ss",
+ "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
+ ],
+ [
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
+ ],
+ [
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
+ ],
+ [
+ "VCUSal_0806_R",
+ "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
+ ]
+ ]
+ },
+ "MDP": {
+ "Genotypes": [
+ [
+ "MDPGeno",
+ "MDP Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "MDPPublish",
+ "Mouse Phenome Database"
+ ]
+ ]
+ },
+ "NZBXFVB-N2": {
+ "Genotypes": [
+ [
+ "NZBXFVB-N2Geno",
+ "NZBXFVB-N2 Genotypes"
+ ]
+ ],
+ "Mammary Tumors": [
+ [
+ "NCI_Mam_Tum_RMA_0409",
+ "NCI Mammary M430v2 (Apr09) RMA"
+ ],
+ [
+ "NCI_Agil_Mam_Tum_RMA_0409",
+ "NCI Mammary LMT miRNA v2 (Apr09) RMA"
+ ],
+ [
+ "MA_M_0704_R",
+ "NCI Mammary mRNA M430 (July04) RMA"
+ ],
+ [
+ "MA_M_0704_M",
+ "NCI Mammary mRNA M430 (July04) MAS5"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "NZBXFVB-N2Publish",
+ "NZBXFVB-N2 Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "rat": {
+ "HXBBXH": {
+ "Adrenal Gland": [
+ [
+ "HXB_Adrenal_1208",
+ "MDC/CAS/UCL Adrenal 230A (Dec08) RMA"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "HXBBXHGeno",
+ "HXBBXH Genotypes"
+ ]
+ ],
+ "Heart": [
+ [
+ "HXB_Heart_1208",
+ "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Kidney": [
+ [
+ "MA_M2F_0706_R",
+ "Mouse kidney M430v2 Female (Aug06) RMA"
+ ],
+ [
+ "MA_M2M_0706_R",
+ "Mouse kidney M430v2 Male (Aug06) RMA"
+ ],
+ [
+ "MA_M2_0806_R",
+ "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
+ ],
+ [
+ "MA_M2_0806_P",
+ "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
+ ],
+ [
+ "MA_M2_0706_P",
+ "Mouse Kidney M430v2 (Jul06) PDNN"
+ ],
+ [
+ "MA_M2_0706_R",
+ "Mouse Kidney M430v2 (Jul06) RMA"
+ ],
+ [
+ "KI_2A_0405_M",
+ "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
+ ],
+ [
+ "KI_2A_0405_Rz",
+ "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
+ ],
+ [
+ "KI_2A_0405_R",
+ "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Peritoneal Fat": [
+ [
+ "FT_2A_0805_M",
+ "MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5"
+ ],
+ [
+ "FT_2A_0605_Rz",
+ "MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HXBBXHPublish",
+ "HXBBXH Published Phenotypes"
+ ]
+ ]
+ },
+ "SRxSHRSPF2": {
+ "Eye": [
+ [
+ "Eye_AXBXA_1008_RankInv",
+ "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
+ ],
+ [
+ "Eye_M2_0908_R",
+ "Eye M430v2 (Sep08) RMA"
+ ],
+ [
+ "Eye_M2_0908_R_NB",
+ "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_ND",
+ "Eye M430v2 WT Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_WTWT",
+ "Eye M430v2 WT WT (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_WT",
+ "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_MT",
+ "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "BXD_GLA_0911",
+ "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
+ ],
+ [
+ "UIOWA_Eye_RMA_0906",
+ "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "SRxSHRSPF2Geno",
+ "SRxSHRSPF2 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "SRxSHRSPF2Publish",
+ "SRxSHRSPF2 Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "soybean": {
+ "J12XJ58F2": {
+ "Genotypes": [
+ [
+ "J12XJ58F2Geno",
+ "J12XJ58F2 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "J12XJ58F2Publish",
+ "J12XJ58F2 Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "tomato": {
+ "LXP": {
+ "Genotypes": [
+ [
+ "LXPGeno",
+ "LXP Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "LXPPublish",
+ "LXP Published Phenotypes"
+ ]
+ ]
+ }
+ }
+ },
+ "groups": {
+ "All Species": [
+ [
+ "All Groups",
+ "All Groups"
+ ]
+ ],
+ "arabidopsis": [
+ [
+ "BayXSha",
+ "BayXSha"
+ ],
+ [
+ "ColXBur",
+ "ColXBur"
+ ],
+ [
+ "ColXCvi",
+ "ColXCvi"
+ ]
+ ],
+ "barley": [
+ [
+ "QSM",
+ "QSM"
+ ],
+ [
+ "SXM",
+ "SXM"
+ ]
+ ],
+ "drosophila": [
+ [
+ "DGRP",
+ "Drosophila Genetic Reference Panel"
+ ],
+ [
+ "Oregon-R_x_2b3",
+ "Oregon-R x 2b3"
+ ]
+ ],
+ "human": [
+ [
+ "AD-cases-controls",
+ "AD Cases & Controls (Liang)"
+ ],
+ [
+ "AD-cases-controls-Myers",
+ "AD Cases & Controls (Myers)"
+ ],
+ [
+ "CANDLE",
+ "CANDLE"
+ ],
+ [
+ "CEPH-2004",
+ "CEPH Families"
+ ],
+ [
+ "HB",
+ "Harvard Brain Tissue Resource Center"
+ ],
+ [
+ "HLC",
+ "Human Liver Cohort"
+ ],
+ [
+ "HSB",
+ "KIN/YSM"
+ ]
+ ],
+ "macaque monkey": [
+ [
+ "Macaca-fasicularis",
+ "Macaca fasicularis (Cynomolgus monkey)"
+ ]
+ ],
+ "mouse": [
+ [
+ "AKXD",
+ "AKXD"
+ ],
+ [
+ "AXBXA",
+ "AXB/BXA"
+ ],
+ [
+ "B6BTBRF2",
+ "B6BTBRF2"
+ ],
+ [
+ "B6D2F2",
+ "B6D2F2"
+ ],
+ [
+ "BDF2-1999",
+ "BDF2 UCLA"
+ ],
+ [
+ "BDF2-2005",
+ "BDF2-2005"
+ ],
+ [
+ "BHF2",
+ "BHF2 (Apoe Null) UCLA"
+ ],
+ [
+ "BHHBF2",
+ "BH/HB F2 UCLA"
+ ],
+ [
+ "BXD",
+ "BXD"
+ ],
+ [
+ "BXH",
+ "BXH"
+ ],
+ [
+ "CTB6F2",
+ "CastB6/B6Cast F2 UCLA"
+ ],
+ [
+ "CXB",
+ "CXB"
+ ],
+ [
+ "HS",
+ "Heterogeneous Stock"
+ ],
+ [
+ "HS-CC",
+ "Heterogeneous Stock Collaborative Cross"
+ ],
+ [
+ "LXS",
+ "LXS"
+ ],
+ [
+ "MDP",
+ "Mouse Diversity Panel"
+ ],
+ [
+ "NZBXFVB-N2",
+ "NZB/FVB N2 NCI"
+ ]
+ ],
+ "rat": [
+ [
+ "HXBBXH",
+ "HXB/BXH"
+ ],
+ [
+ "SRxSHRSPF2",
+ "UIOWA SRxSHRSP F2"
+ ]
+ ],
+ "soybean": [
+ [
+ "J12XJ58F2",
+ "J12XJ58F2"
+ ]
+ ],
+ "tomato": [
+ [
+ "LXP",
+ "LXP"
+ ]
+ ]
+ },
+ "species": [
+ [
+ "human",
+ "Human"
+ ],
+ [
+ "macaque monkey",
+ "Macaque monkey"
+ ],
+ [
+ "mouse",
+ "Mouse"
+ ],
+ [
+ "rat",
+ "Rat"
+ ],
+ [
+ "drosophila",
+ "Drosophila"
+ ],
+ [
+ "arabidopsis",
+ "Arabidopsis thaliana"
+ ],
+ [
+ "barley",
+ "Barley"
+ ],
+ [
+ "soybean",
+ "Soybean"
+ ],
+ [
+ "tomato",
+ "Tomato"
+ ],
+ [
+ "All Species",
+ "All Species"
+ ]
+ ],
+ "types": {
+ "All Species": {
+ "All Groups": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ]
+ ]
+ },
+ "arabidopsis": {
+ "BayXSha": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ],
+ "ColXBur": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ],
+ "ColXCvi": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ]
+ },
+ "barley": {
+ "QSM": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Leaf",
+ "Leaf mRNA"
+ ]
+ ],
+ "SXM": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Embryo",
+ "Embryo mRNA"
+ ],
+ [
+ "Leaf",
+ "Leaf mRNA"
+ ]
+ ]
+ },
+ "drosophila": {
+ "DGRP": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Whole Body",
+ "Whole Body mRNA"
+ ]
+ ],
+ "Oregon-R_x_2b3": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Whole Body",
+ "Whole Body mRNA"
+ ]
+ ]
+ },
+ "human": {
+ "AD-cases-controls": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ]
+ ],
+ "AD-cases-controls-Myers": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ]
+ ],
+ "CANDLE": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Newborn Cord Blood",
+ "Newborn Cord Blood mRNA"
+ ]
+ ],
+ "CEPH-2004": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Lymphoblast B-cell",
+ "Lymphoblast B-cell mRNA"
+ ]
+ ],
+ "HB": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Cerebellum",
+ "Cerebellum mRNA"
+ ],
+ [
+ "Prefrontal Cortex",
+ "Prefrontal Cortex mRNA"
+ ],
+ [
+ "Primary Visual Cortex",
+ "Primary Visual Cortex mRNA"
+ ]
+ ],
+ "HLC": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ]
+ ],
+ "HSB": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Amygdala",
+ "Amygdala mRNA"
+ ],
+ [
+ "Caudal Ganglionic Eminence",
+ "Caudal Ganglionic Eminence mRNA"
+ ],
+ [
+ "Cerebellar Cortex",
+ "Cerebellar Cortex mRNA"
+ ],
+ [
+ "Diencephalon",
+ "Diencephalon mRNA"
+ ],
+ [
+ "Dorsal Thalamus",
+ "Dorsal Thalamus mRNA"
+ ],
+ [
+ "Dorsolateral Prefrontal Cortex",
+ "Dorsolateral Prefrontal Cortex mRNA"
+ ],
+ [
+ "Frontal Cerebral Wall",
+ "Frontal Cerebral Wall mRNA"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Inferior Temporal Cortex",
+ "Inferior Temporal Cortex mRNA"
+ ],
+ [
+ "Lateral Ganglionic Eminence",
+ "Lateral Ganglionic Eminence mRNA"
+ ],
+ [
+ "Medial Ganglionic Eminence",
+ "Medial Ganglionic Eminence mRNA"
+ ],
+ [
+ "Medial Prefrontal Cortex",
+ "Medial Prefrontal Cortex mRNA"
+ ],
+ [
+ "Mediodorsal Nucleus of Thalamus",
+ "Mediodorsal Nucleus of Thalamus mRNA"
+ ],
+ [
+ "Occipital Cerebral Wall",
+ "Occipital Cerebral Wall mRNA"
+ ],
+ [
+ "Orbital Prefrontal Cortex",
+ "Orbital Prefrontal Cortex mRNA"
+ ],
+ [
+ "Parietal Cerebral Wall",
+ "Parietal Cerebral Wall mRNA"
+ ],
+ [
+ "Posterior Inferior Parietal Cortex",
+ "Posterior Inferior Parietal Cortex mRNA"
+ ],
+ [
+ "Posterior Superior Temporal Cortex",
+ "Posterior Superior Temporal Cortex mRNA"
+ ],
+ [
+ "Primary Auditory (A1) Cortex",
+ "Primary Auditory (A1) Cortex mRNA"
+ ],
+ [
+ "Primary Motor (M1) Cortex",
+ "Primary Motor (M1) Cortex mRNA"
+ ],
+ [
+ "Primary Somatosensory (S1) Cortex",
+ "Primary Somatosensory (S1) Cortex mRNA"
+ ],
+ [
+ "Primary Visual Cortex",
+ "Primary Visual Cortex mRNA"
+ ],
+ [
+ "Striatum",
+ "Striatum mRNA"
+ ],
+ [
+ "Temporal Cerebral Wall",
+ "Temporal Cerebral Wall mRNA"
+ ],
+ [
+ "Upper (Rostral) Rhombic Lip",
+ "Upper (Rostral) Rhombic Lip mRNA"
+ ],
+ [
+ "Ventral Forebrain",
+ "Ventral Forebrain mRNA"
+ ],
+ [
+ "Ventrolateral Prefrontal Cortex",
+ "Ventrolateral Prefrontal Cortex mRNA"
+ ]
+ ]
+ },
+ "macaque monkey": {
+ "Macaca-fasicularis": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Amygdala",
+ "Amygdala mRNA"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Nucleus Accumbens",
+ "Nucleus Accumbens mRNA"
+ ],
+ [
+ "Prefrontal Cortex",
+ "Prefrontal Cortex mRNA"
+ ]
+ ]
+ },
+ "mouse": {
+ "AKXD": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Mammary Tumors",
+ "Mammary Tumors mRNA"
+ ]
+ ],
+ "AXBXA": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Eye",
+ "Eye mRNA"
+ ]
+ ],
+ "B6BTBRF2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ]
+ ],
+ "B6D2F2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ]
+ ],
+ "BDF2-1999": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ]
+ ],
+ "BDF2-2005": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Striatum",
+ "Striatum mRNA"
+ ]
+ ],
+ "BHF2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Adipose",
+ "Adipose mRNA"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Muscle",
+ "Muscle mRNA"
+ ]
+ ],
+ "BHHBF2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Adipose",
+ "Adipose mRNA"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Muscle",
+ "Muscle mRNA"
+ ]
+ ],
+ "BXD": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Amygdala",
+ "Amygdala mRNA"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ],
+ [
+ "Cartilage",
+ "Cartilage mRNA"
+ ],
+ [
+ "Cerebellum",
+ "Cerebellum mRNA"
+ ],
+ [
+ "Eye",
+ "Eye mRNA"
+ ],
+ [
+ "Hematopoietic Cells",
+ "Hematopoietic Cells mRNA"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Hypothalamus",
+ "Hypothalamus mRNA"
+ ],
+ [
+ "Kidney",
+ "Kidney mRNA"
+ ],
+ [
+ "Leucocytes",
+ "Leucocytes mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Lung",
+ "Lung mRNA"
+ ],
+ [
+ "Midbrain",
+ "Midbrain mRNA"
+ ],
+ [
+ "Muscle",
+ "Muscle mRNA"
+ ],
+ [
+ "Neocortex",
+ "Neocortex mRNA"
+ ],
+ [
+ "Nucleus Accumbens",
+ "Nucleus Accumbens mRNA"
+ ],
+ [
+ "Prefrontal Cortex",
+ "Prefrontal Cortex mRNA"
+ ],
+ [
+ "Retina",
+ "Retina mRNA"
+ ],
+ [
+ "Spleen",
+ "Spleen mRNA"
+ ],
+ [
+ "Striatum",
+ "Striatum mRNA"
+ ],
+ [
+ "T Cell (helper)",
+ "T Cell (helper) mRNA"
+ ],
+ [
+ "T Cell (regulatory)",
+ "T Cell (regulatory) mRNA"
+ ],
+ [
+ "Thymus",
+ "Thymus mRNA"
+ ],
+ [
+ "Ventral Tegmental Area",
+ "Ventral Tegmental Area mRNA"
+ ]
+ ],
+ "BXH": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Cartilage",
+ "Cartilage mRNA"
+ ]
+ ],
+ "CTB6F2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Adipose",
+ "Adipose mRNA"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Muscle",
+ "Muscle mRNA"
+ ]
+ ],
+ "CXB": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Spleen",
+ "Spleen mRNA"
+ ]
+ ],
+ "HS": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Lung",
+ "Lung mRNA"
+ ]
+ ],
+ "HS-CC": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Striatum",
+ "Striatum mRNA"
+ ]
+ ],
+ "LXS": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Prefrontal Cortex",
+ "Prefrontal Cortex mRNA"
+ ]
+ ],
+ "MDP": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ]
+ ],
+ "NZBXFVB-N2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Mammary Tumors",
+ "Mammary Tumors mRNA"
+ ]
+ ]
+ },
+ "rat": {
+ "HXBBXH": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Adrenal Gland",
+ "Adrenal Gland mRNA"
+ ],
+ [
+ "Heart",
+ "Heart mRNA"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Kidney",
+ "Kidney mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Peritoneal Fat",
+ "Peritoneal Fat mRNA"
+ ]
+ ],
+ "SRxSHRSPF2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Eye",
+ "Eye mRNA"
+ ]
+ ]
+ },
+ "soybean": {
+ "J12XJ58F2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ]
+ },
+ "tomato": {
+ "LXP": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ]
+ }
+ }
+} \ No newline at end of file