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authorPjotr Prins2015-03-09 15:34:16 +0300
committerPjotr Prins2015-03-09 15:34:16 +0300
commitf92657b08cb2dab8b24c69dee525f52c125713a3 (patch)
tree2f2d86d004f43b47fef833d133eb91be5b348745 /wqflask
parentd924bc5842d2813aad8359b9cb614c2a87df1ee9 (diff)
downloadgenenetwork2-f92657b08cb2dab8b24c69dee525f52c125713a3.tar.gz
Write genotype file (start)
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py6
1 files changed, 4 insertions, 2 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
index d04f9b94..7376a1d5 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
@@ -150,8 +150,10 @@ if options.geno:
     wrln("# Phenotypes = "+str(len(num_snps)))
 
     def out(i,x):
-        # print(i,x)
-        pass
+        wr(str(i)+"\t")
+        for v in x:
+          wr("\t".join(str(v)))
+        wr("\n")
         
     snps = plink.readbed(options.geno+'.bed',num_inds, out)
     # for i in range(num_snps):