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| author | zsloan | 2020-11-05 17:07:57 -0600 |
|---|---|---|
| committer | zsloan | 2020-11-05 17:07:57 -0600 |
| commit | 0afe0620216635eeda6e7481e7bc917e0976042b (patch) | |
| tree | 3f83d2483fc395fd3313e94496966385a292592c /wqflask | |
| parent | 8f70b408c6df130ba9bef2b159c32ef0c8d6c327 (diff) | |
| download | genenetwork2-0afe0620216635eeda6e7481e7bc917e0976042b.tar.gz | |
Added some additional necessary fields to generate_corr_json in show_corr_results.py
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/correlation/show_corr_results.py | 22 |
1 files changed, 21 insertions, 1 deletions
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index f0187ef9..ebfea8fe 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -486,8 +486,13 @@ def generate_corr_json(corr_results, this_trait, dataset, target_dataset, for_ap results_dict = {} results_dict['index'] = i + 1 results_dict['trait_id'] = trait.name + results_dict['dataset'] = trait.dataset.name if target_dataset.type == "ProbeSet": results_dict['symbol'] = trait.symbol + if len(trait.description_display) > 40: + results_dict['description'] = trait.description_display[:40] + "..." + else: + results_dict['description'] = trait.description_display results_dict['description'] = trait.description_display results_dict['location'] = trait.location_repr if trait.mean and trait.mean != "": @@ -512,11 +517,26 @@ def generate_corr_json(corr_results, this_trait, dataset, target_dataset, for_ap results_dict['lit_corr'] = "%0.3f" % float(trait.lit_corr) if trait.tissue_corr == "" or trait.tissue_corr == 0: results_dict['tissue_corr'] = "--" + results_dict['tissue_pvalue'] = "--" else: results_dict['tissue_corr'] = "%0.3f" % float(trait.tissue_corr) + results_dict['tissue_pvalue'] = "%0.3e" % float(trait.tissue_pvalue) elif target_dataset.type == "Publish": - results_dict['description'] = trait.description_display + results_dict['abbreviation'] = trait.abbreviation + if len(trait.abbreviation) > 20: + results_dict['abbreviation_display'] = trait.abbreviation[:20] + "..." + else: + results_dict['abbreviation_display'] = trait.abbreviation + if len(trait.description_display) > 40: + results_dict['description'] = trait.description_display[:40] + "..." + else: + results_dict['description'] = trait.description_display results_dict['authors'] = trait.authors + authors_list = trait.authors.split(',') + if len(authors_list > 6): + results_dict['authors_display'] = authors_list[:6].join(", ") + ", et al." + else: + results_dict['authors_display'] = trait.authors if trait.pubmed_id: if for_api: results_dict['pubmed_id'] = trait.pubmed_id |