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authorzsloan2016-02-18 17:14:26 +0000
committerzsloan2016-02-18 17:14:26 +0000
commit6d8503e53b48ba2e398ff7950d2a722ffc2b6026 (patch)
tree0805a4a77b464a2575519cdda466522b0f9ab14b /wqflask/wqflask
parent7f5536635ac20f7c670e4dc8e650f27d47503d78 (diff)
downloadgenenetwork2-6d8503e53b48ba2e398ff7950d2a722ffc2b6026.tar.gz
Edited gen_select_dataset to remove confidential datasets
Also hard-coded the removal of Macaque Monkey since I couldn't think of a good way to retroactively check if every dataset in a species is confidential
Diffstat (limited to 'wqflask/wqflask')
-rwxr-xr-xwqflask/wqflask/static/new/javascript/dataset_menu_structure.json1542
1 files changed, 884 insertions, 658 deletions
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
index 5194cb96..2154541c 100755
--- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
+++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
@@ -210,6 +210,13 @@
"AD-cases-controls-MyersGeno",
"AD-cases-controls-Myers Genotypes"
]
+ ],
+ "Phenotypes": [
+ [
+ "None",
+ "AD-cases-controls-MyersPublish",
+ "AD-cases-controls-Myers Published Phenotypes"
+ ]
]
},
"Aging-Brain-UCI": {
@@ -227,6 +234,13 @@
"GSE11882 UCI Human Hippocampus Affy U133 Plus2 (Sep13) RMA"
]
],
+ "Phenotypes": [
+ [
+ "None",
+ "Aging-Brain-UCIPublish",
+ "Aging-Brain-UCI Published Phenotypes"
+ ]
+ ],
"Postcentral Gyrus mRNA": [
[
"462",
@@ -273,18 +287,6 @@
]
},
"CANDLE": {
- "Methylation": [
- [
- "423",
- "CANDLE_Meth27_0313",
- "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13) **"
- ],
- [
- "422",
- "CANDLE_Meth_0313",
- "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13) Z-Score **"
- ]
- ],
"Newborn Cord Blood mRNA": [
[
"324",
@@ -880,6 +882,379 @@
]
]
},
+ "GTEx_v5": {
+ "Adrenal Gland mRNA": [
+ [
+ "720",
+ "GTEXv5_AdrGla_0915",
+ "GTEXv5 Human Adrenal Gland RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Amygdala mRNA": [
+ [
+ "725",
+ "GTEXv5_Amy_0915",
+ "GTEXv5 Human Brain Amygdala RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Anterior Cingulate Cortex mRNA": [
+ [
+ "726",
+ "GTEXv5_AntCtx_0915",
+ "GTEXv5 Human Brain Anterior Cingulate Cortex BA24 RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Aorta mRNA": [
+ [
+ "721",
+ "GTEXv5_ArtAor_0915",
+ "GTEXv5 Human Artery Aorta RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Bladder mRNA": [
+ [
+ "724",
+ "GTEXv5_Bla_0915",
+ "GTEXv5 Human Bladder RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Bone Marrow mRNA": [
+ [
+ "740",
+ "GTEXv5_BM_0915",
+ "GTEXv5 Human Cells-Leukemia Cell Line CML RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Breast - Mammary Tissue mRNA": [
+ [
+ "738",
+ "GTEXv5_BrMa_0915",
+ "GTEXv5 Human Breast Mammary Tissue RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Caudate mRNA": [
+ [
+ "727",
+ "GTEXv5_BrCa_0915",
+ "GTEXv5 Human Brain Caudate Basal Ganglia RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Cells - EBV-Transformed Lymphocytes mRNA": [
+ [
+ "739",
+ "GTEXv5_EBV_0915",
+ "GTEXv5 Human Cells-EBV-Transformed Lymphocytes RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Cells - Transformed Fibroblasts mRNA": [
+ [
+ "741",
+ "GTEXv5_CTF_0915",
+ "GTEXv5 Human Cells-Transformed Fibroblasts RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Cerebellar Cortex mRNA": [
+ [
+ "730",
+ "GTEXv5_BrCtx_0915",
+ "GTEXv5 Human Brain Cortex RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Cerebellar Hemisphere mRNA": [
+ [
+ "728",
+ "GTEXv5_CerH_0915",
+ "GTEXv5 Human Brain Cerebellar Hemisphere RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Cerebellum mRNA": [
+ [
+ "729",
+ "GTEXv5_BrCe_0915",
+ "GTEXv5 Human Brain Cerebellum RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Cervix mRNA": [
+ [
+ "742",
+ "GTEXv5_CerEct_0915",
+ "GTEXv5 Human Cervix-Ectocervix RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Colon - Sigmoid mRNA": [
+ [
+ "743",
+ "GTEXv5_ColSig_0915",
+ "GTEXv5 Human Colon-Sigmoid RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Colon - Transverse mRNA": [
+ [
+ "744",
+ "GTEXv5_ColTra_0915",
+ "GTEXv5 Human Colon-Transverse RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Coronary mRNA": [
+ [
+ "722",
+ "GTEXv5_ArtCor_0915",
+ "GTEXv5 Human Artery Coronary RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Esophagus - Gastroesophageal mRNA": [
+ [
+ "745",
+ "GTEXv5_GastJun_0915",
+ "GTEXv5 Human Esophagus - Gastroesophageal Junction RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Esophagus - Mucosa mRNA": [
+ [
+ "746",
+ "GTEXv5_EsoMu_0915",
+ "GTEXv5 Human Esophagus - Mucosa RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Esophagus - Muscularis mRNA": [
+ [
+ "747",
+ "GTEXv5_EsoMus_0915",
+ "GTEXv5 Human Esophagus - Muscularis RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Fallopian Tube mRNA": [
+ [
+ "748",
+ "GTEXv5_Fatu_0915",
+ "GTEXv5 Human Fallopian Tube RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Frontal Cortex mRNA": [
+ [
+ "731",
+ "GTEXv5_BrFr_0915",
+ "GTEXv5 Human Brain Frontal Cortex BA9 RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Heart - Atrial Appendage mRNA": [
+ [
+ "749",
+ "GTEXv5_HAA_0915",
+ "GTEXv5 Human Heart - Atrial Appendage RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Heart - Left Ventricle mRNA": [
+ [
+ "750",
+ "GTEXv5_LV_0915",
+ "GTEXv5 Human Heart - Left Ventricle RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Hippocampus mRNA": [
+ [
+ "732",
+ "GTEXv5_Hip_0915",
+ "GTEXv5 Human Brain Hippocampus RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Hypothalamus mRNA": [
+ [
+ "733",
+ "GTEXv5_Hiptha_0915",
+ "GTEXv5 Human Brain Hypothalamus RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Kidney mRNA": [
+ [
+ "751",
+ "GTEXv5_Kidn_0915",
+ "GTEXv5 Human Kidney - Cortex RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Liver mRNA": [
+ [
+ "752",
+ "GTEXv5_Liv_0915",
+ "GTEXv5 Human Liver RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Lung mRNA": [
+ [
+ "753",
+ "GTEXv5_Lung_0915",
+ "GTEXv5 Human Lung RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Muscle mRNA": [
+ [
+ "754",
+ "GTEXv5_MuSk_0915",
+ "GTEXv5 Human Muscle - Skeletal RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Nerve - Tibial mRNA": [
+ [
+ "755",
+ "GTEXv5_Tib_0915",
+ "GTEXv5 Human Nerve - Tibial RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Nucleus Accumbens mRNA": [
+ [
+ "734",
+ "GTEXv5_NuAcc_0915",
+ "GTEXv5 Human Brain Nucleus Accumbens Basal Ganglia RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Ovary mRNA": [
+ [
+ "756",
+ "GTEXv5_Ov_0915",
+ "GTEXv5 Human Ovary RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Pancreas mRNA": [
+ [
+ "757",
+ "GTEXv5_Panc_0915",
+ "GTEXv5 Human Pancreas RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Pituitary Gland mRNA": [
+ [
+ "758",
+ "GTEXv5_Pit_0915",
+ "GTEXv5 Human Pituitary RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Prostate mRNA": [
+ [
+ "759",
+ "GTEXv5_Prost_0915",
+ "GTEXv5 Human Prostate RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Putamen mRNA": [
+ [
+ "735",
+ "GTEXv5_PutB_0915",
+ "GTEXv5 Human Brain Putamen Basal Ganglia RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Salivary Gland mRNA": [
+ [
+ "760",
+ "GTEXv5_SalGl_0915",
+ "GTEXv5 Human Salivary Gland Minor RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Skin - Not Sun Exposed (Suprapubic) mRNA": [
+ [
+ "761",
+ "GTEXv5_SkN_0915",
+ "GTEXv5 Human Skin-Not Sun Exposed-Suprapubic RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Skin - Sun Exposed (Lower leg) mRNA": [
+ [
+ "762",
+ "GTEXv5_SkS_0915",
+ "GTEXv5 Human Skin-Sun Exposed-Lower Leg RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Small Intestine - Terminal Ileum mRNA": [
+ [
+ "763",
+ "GTEXv5_SInt_0915",
+ "GTEXv5 Human Small Intestine - Terminal Ileum RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Spinal Cord mRNA": [
+ [
+ "736",
+ "GTEXv5_SpCo_0915",
+ "GTEXv5 Human Brain Spinal Cord Cervical C-1 RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Spleen mRNA": [
+ [
+ "764",
+ "GTEXv5_Sple_0915",
+ "GTEXv5 Human Spleen RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Stomach mRNA": [
+ [
+ "765",
+ "GTEXv5_Sto_0915",
+ "GTEXv5 Human Stomach RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Subcutaneous mRNA": [
+ [
+ "718",
+ "GTEXv5_AdipSub_0915",
+ "GTEXv5 Human Adipose Subcutaneous RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Substantia Nigra mRNA": [
+ [
+ "737",
+ "GTEXv5_SubN_0915",
+ "GTEXv5 Human Brain Substantia Nigra RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Testis mRNA": [
+ [
+ "766",
+ "GTEXv5_Test_0915",
+ "GTEXv5 Human Testis RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Thyroid mRNA": [
+ [
+ "767",
+ "GTEXv5_Thy_0915",
+ "GTEXv5 Human Thyroid RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Tibial mRNA": [
+ [
+ "723",
+ "GTEXv5_ArtTib_0915",
+ "GTEXv5 Human Artery Tibial RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Uterus mRNA": [
+ [
+ "768",
+ "GTEXv5_Ut_0915",
+ "GTEXv5 Human Uterus RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Vagina mRNA": [
+ [
+ "769",
+ "GTEXv5_Vag_0915",
+ "GTEXv5 Human Vagina RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Visceral mRNA": [
+ [
+ "719",
+ "GTEXv5_AdiVis_0915",
+ "GTEXv5 Human Adipose Visceral Omentum RefSeq (Sep15) RPKM log2"
+ ]
+ ],
+ "Whole Blood mRNA": [
+ [
+ "770",
+ "GTEXv5_Wbl_0915",
+ "GTEXv5 Human Whole Blood RefSeq (Sep15) RPKM log2"
+ ]
+ ]
+ },
"HB": {
"Cerebellum mRNA": [
[
@@ -991,16 +1366,6 @@
"Super Series GSE23546 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA"
],
[
- "452",
- "luCA_GSE23352HLT0613",
- "UL/GSE23352 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA (Jun11) RMA"
- ],
- [
- "453",
- "UBC-GSE23529HLT0613",
- "UBC/GSE23529 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA"
- ],
- [
"454",
"GRNG-GSE23545HLT0613",
"GRNG/GSE23545 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA"
@@ -1064,6 +1429,13 @@
"Human Orbital Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
+ "Phenotypes": [
+ [
+ "None",
+ "HSBPublish",
+ "HSB Published Phenotypes"
+ ]
+ ],
"Posterior Inferior Parietal Cortex mRNA": [
[
"338",
@@ -1122,45 +1494,6 @@
]
}
},
- "macaque monkey": {
- "Macaca-fasicularis": {
- "Amygdala mRNA": [
- [
- "255",
- "INIA_MacFas_AMG_RMA_0110",
- "INIA Macaca fasicularis Amygdala (Jan10) RMA **"
- ]
- ],
- "Brain mRNA": [
- [
- "251",
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ]
- ],
- "Hippocampus mRNA": [
- [
- "254",
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus (Jan10) RMA **"
- ]
- ],
- "Nucleus Accumbens mRNA": [
- [
- "253",
- "INIA_MacFas_Ac_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens (Jan10) RMA **"
- ]
- ],
- "Prefrontal Cortex mRNA": [
- [
- "252",
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex (Jan10) RMA **"
- ]
- ]
- }
- },
"mouse": {
"AKXD": {
"Genotypes": [
@@ -1263,11 +1596,6 @@
"B6D2F2": {
"Brain mRNA": [
[
- "77",
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
"76",
"BRF2_M_0805_M",
"OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
@@ -1278,6 +1606,11 @@
"OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
],
[
+ "77",
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
"33",
"BRF2_M_0304_P",
"OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
@@ -1309,35 +1642,20 @@
"B6D2F2-PSU Genotypes"
]
],
- "Muscle mRNA": [
- [
- "134",
- "PSU-B6D2F2_0812",
- "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA **"
- ],
- [
- "404",
- "PSU-B6D2F2_F0812",
- "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Females **"
- ],
- [
- "405",
- "PSU-B6D2F2_M0812",
- "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males **"
- ],
+ "Phenotypes": [
[
- "406",
- "PSU-B6D2F2_M2000812",
- "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males Aged 200 **"
+ "None",
+ "B6D2F2-PSUPublish",
+ "B6D2F2-PSU Published Phenotypes"
]
]
},
"B6D2RI": {
- "Hippocampus mRNA": [
+ "Phenotypes": [
[
- "391",
- "UTHSC_B6D2RI_H_0912",
- "UTHSC B6D2RI Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA **"
+ "None",
+ "B6D2RIPublish",
+ "B6D2RI Published Phenotypes"
]
]
},
@@ -1442,21 +1760,11 @@
"UCLA BHF2 Liver (June05) mlratio"
]
],
- "Muscle mRNA": [
- [
- "202",
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
- "203",
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio **"
- ],
+ "Phenotypes": [
[
- "168",
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio **"
+ "None",
+ "BHF2Publish",
+ "BHF2 Published Phenotypes"
]
]
},
@@ -1609,35 +1917,10 @@
"414",
"UCLA_BXD-on_Femur_0113_RSN",
"UCLA GSE27483 BXD Only Bone Femur ILM Mouse WG-6 v2.0 (Jan13) RSN"
- ],
- [
- "464",
- "UTHSCWGU88BFMG1013",
- "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA **"
- ],
- [
- "465",
- "UTHSCWGU88BFMEx1013",
- "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA **"
- ],
- [
- "466",
- "UTHSCWGU88BFFG1013",
- "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA **"
- ],
- [
- "467",
- "UTHSCWGU88BFFEx1013",
- "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA **"
]
],
"Brain mRNA": [
[
- "589",
- "UTHSC_BXD_WB_RNASeqtrim1112",
- "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Trimmed 2.0"
- ],
- [
"164",
"UTHSC_BXD_WB_RNASeq1112",
"UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Untrimmed"
@@ -1720,76 +2003,6 @@
"9",
"CB_M_1003_M",
"SJUT Cerebellum mRNA M430 (Oct03) MAS5"
- ],
- [
- "436",
- "CMMTUBCBXDCerILM0513",
- "UBC/CMMT BXD Cerebellum All Ages Combined ILM Mouse WG-6 v2.0 (May13) RankInv **"
- ],
- [
- "441",
- "CMMTUBCBXDG12CerILM0513",
- "UBC/CMMT BXD E12 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **"
- ],
- [
- "442",
- "CMMTUBCBXDG15CerILM0513",
- "UBC/CMMT BXD E15 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **"
- ],
- [
- "443",
- "CMMTUBCBXDG18CerILM0513",
- "UBC/CMMT BXD E18 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **"
- ],
- [
- "437",
- "CMMTUBCBXDP00CerILM0513",
- "UBC/CMMT BXD P0 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **"
- ],
- [
- "438",
- "CMMTUBCBXDP03CerILM0513",
- "UBC/CMMT BXD P3 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **"
- ],
- [
- "439",
- "CMMTUBCBXDP06CerILM0513",
- "UBC/CMMT BXD P6 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **"
- ],
- [
- "440",
- "CMMTUBCBXDP09CerILM0513",
- "UBC/CMMT BXD P9 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **"
- ],
- [
- "415",
- "GenEx_BXD_CerebEt_RMA_0213",
- "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes **"
- ],
- [
- "416",
- "GenEx_BXD_CerebEt_RMA_F_0213",
- "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Females **"
- ],
- [
- "417",
- "GenEx_BXD_CerebEt_RMA_M_0213",
- "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Males **"
- ],
- [
- "418",
- "GenEx_BXD_CerebSal_RMA_0213",
- "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes **"
- ],
- [
- "419",
- "GenEx_BXD_CerebSal_RMA_F_0213",
- "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Females **"
- ],
- [
- "420",
- "GenEx_BXD_CerebSal_RMA_M_0213",
- "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Males **"
]
],
"Eye mRNA": [
@@ -1801,32 +2014,32 @@
[
"10",
"gn10",
- "Eye M430v2 No Mutant/Mutant (Aug12) RMA **"
+ "Eye M430v2 No Mutant/Mutant (Aug12) RMA"
],
[
"261",
"Eye_M2_0908_R_NB",
- "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
+ "Eye M430v2 Mutant Gpnmb (Sep08) RMA"
],
[
"262",
"Eye_M2_0908_R_ND",
- "Eye M430v2 WT Gpnmb (Sep08) RMA **"
- ],
- [
- "279",
- "Eye_M2_0908_R_WT",
- "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
+ "Eye M430v2 WT Gpnmb (Sep08) RMA"
],
[
"278",
"Eye_M2_0908_R_MT",
- "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
+ "Eye M430v2 Mutant Tyrp1 (Sep08) RMA"
],
[
"382",
"Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA **"
+ "Eye M430v2 WT WT (Sep08) RMA"
+ ],
+ [
+ "279",
+ "Eye_M2_0908_R_WT",
+ "Eye M430v2 WT Tyrp1 (Sep08) RMA"
],
[
"400",
@@ -1839,11 +2052,33 @@
"Howell et al. 2011, DBA/2J Glaucoma Retina M430 2.0 (Sep11) RMA"
]
],
+ "Fecal Metabolome": [
+ [
+ "717",
+ "RTI_RCMRC-BXDFecMetlog0814",
+ "RTI RCMRC BXD Fecal Metabolites CD+HFD (Aug14) Log2"
+ ],
+ [
+ "716",
+ "RTI_RCMRC-BXDFecMetHFlog0814",
+ "RTI RCMRC BXD Fecal Metabolites HFD (Aug14) Log2"
+ ],
+ [
+ "715",
+ "RTI_RCMRC-BXDFecMetLFlog0814",
+ "RTI RCMRC BXD Fecal Metabolites CD (Aug14) Log2"
+ ]
+ ],
"Gastrointestinal mRNA": [
[
"539",
"UTHSC_GutGL_0414",
- "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Gene Level (Apr14) RMA **"
+ "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Gene Level (Apr14) RMA"
+ ],
+ [
+ "597",
+ "UTHSC_GutExL_0414",
+ "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Exon Level (Apr14) RMA"
]
],
"Genotypes": [
@@ -1853,28 +2088,6 @@
"BXD Genotypes"
]
],
- "Heart mRNA": [
- [
- "485",
- "EPFL-LISPBXDHeCD0114",
- "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA **"
- ],
- [
- "486",
- "EPFL-LISPBXDHeHFD0114",
- "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA **"
- ],
- [
- "487",
- "EPFL-LISPBXDHeCDEx0114",
- "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA **"
- ],
- [
- "488",
- "EPFL-LISPBXDHeHFDEx0114",
- "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA **"
- ]
- ],
"Hematopoietic Cells mRNA": [
[
"149",
@@ -1922,6 +2135,13 @@
"GNF Stem Cells U74Av2 (Mar04) RMA"
]
],
+ "Hippocampal Precursor Cells mRNA": [
+ [
+ "706",
+ "CRTD_HipPreCell1214",
+ "CRTD BXD Hippocampal Precursor Cells ILM MouseWG-6_R13 (Dec14) Quantile"
+ ]
+ ],
"Hippocampus mRNA": [
[
"112",
@@ -1939,6 +2159,11 @@
"Hippocampus Consortium M430v2 (Jun06) RMA"
],
[
+ "206",
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
"291",
"UT_ILM_BXD_hipp_5T_1112",
"UTHSC Hippocampus Illumina v6.1 All Combined (Nov12) RankInv"
@@ -1969,11 +2194,6 @@
"UTHSC Hippocampus Illumina v6.1 RSE (Nov12) RankInv"
],
[
- "206",
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
"242",
"UT_ILM_BXD_hipp_NON_0909",
"UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
@@ -1997,23 +2217,6 @@
"245",
"UT_ILM_BXD_hipp_RSE_0909",
"UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "393",
- "UTHSC_BXD_HArev3_0912",
- "UTHSC BXD Aged Hippocampus rev3 Affy Mouse Gene 1.0 ST (Sep12) RMA **"
- ],
- [
- "392",
- "UTHSC_BXD_H_0912",
- "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA Exon Level **"
- ]
- ],
- "Hippocampus microRNA": [
- [
- "491",
- "UTHSC_BXD_Hip_miRNASeq0214",
- "UTHSC BXD Hippocampus Ion Torrent microRNA (Feb14) RPKM **"
]
],
"Hypothalamus mRNA": [
@@ -2060,16 +2263,16 @@
],
"Kidney mRNA": [
[
- "239",
- "MA_M2F_0706_R",
- "Mouse kidney M430v2 Female (Aug06) RMA"
- ],
- [
"240",
"MA_M2M_0706_R",
"Mouse kidney M430v2 Male (Aug06) RMA"
],
[
+ "239",
+ "MA_M2F_0706_R",
+ "Mouse kidney M430v2 Female (Aug06) RMA"
+ ],
+ [
"118",
"MA_M2_0806_R",
"Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
@@ -2090,49 +2293,82 @@
"Mouse Kidney M430v2 (Jul06) RMA"
]
],
- "Leucocytes mRNA": [
- [
- "218",
- "Illum_BXD_PBL_1108",
- "UWA Illumina PBL (Nov08) RSN **"
- ]
- ],
"Liver Metabolome": [
[
+ "473",
+ "EPFL-LISP_LivPMetCDHFD1213",
+ "EPFL/LISP BXD Liver Polar Metabolites CD+HFD (Jun14)"
+ ],
+ [
"474",
"EPFL-LISP_LivPMetHFD1213",
- "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14) **"
+ "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14)"
],
[
"475",
"EPFL-LISP_LivPMetCD1213",
- "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14) **"
+ "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14)"
+ ],
+ [
+ "713",
+ "EPFL-LISP_LivPMetlog2HFD1213",
+ "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14) Log2"
+ ],
+ [
+ "714",
+ "EPFL-LISP_LivPMetlog2CD1213",
+ "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14) Log2"
]
],
"Liver Proteome": [
[
- "541",
- "EPFLETHZBXDprotHFD0514",
- "EPFL/ETHZ BXD Liver, Soluble Proteins HFD (May14) SWATH **"
+ "704",
+ "EPFLETHZBXDprotCD_LS1114",
+ "EPFL/ETHZ BXD Liver, Chow Diet (Oct14) Light SWATH"
],
[
- "540",
- "EPFLETHZBXDprotCD0514",
- "EPFL/ETHZ BXD Liver, Soluble Proteins CD (May14) SWATH **"
+ "705",
+ "EPFLETHZBXDprotHF_LS1114",
+ "EPFL/ETHZ BXD Liver, High Fat Diet (Oct14) Light SWATH"
],
[
- "489",
- "EPFLBXDprotHFDRPN0214",
- "EPFL/LISP BXD Liver, Soluble Proteins HFD (Feb14) SRM **"
+ "703",
+ "EPFLBXDprotCD-CDHFDRPN0214",
+ "EPFL/LISP BXD Liver, Soluble Proteins CD+HFD (Feb14) SRM"
],
[
"490",
"EPFLBXDprotCDRPN0214",
- "EPFL/LISP BXD Liver, Soluble Proteins CD (Feb14) SRM **"
+ "EPFL/LISP BXD Liver, Soluble Proteins CD (Feb14) SRM"
+ ],
+ [
+ "489",
+ "EPFLBXDprotHFDRPN0214",
+ "EPFL/LISP BXD Liver, Soluble Proteins HFD (Feb14) SRM"
+ ],
+ [
+ "540",
+ "EPFLETHZBXDprotCD0514",
+ "EPFL/ETHZ BXD Liver, Soluble Proteins CD (Jun14) SWATH"
+ ],
+ [
+ "541",
+ "EPFLETHZBXDprotHFD0514",
+ "EPFL/ETHZ BXD Liver, Soluble Proteins HFD (Jun14) SWATH"
]
],
"Liver mRNA": [
[
+ "700",
+ "UT-VGX_HGL1014",
+ "UT-VGX Hepatocytes Affy Mouse Gene 1.0 ST Gene Level (Oct14) RMA"
+ ],
+ [
+ "701",
+ "UT-VGX_HEL1014",
+ "UT-VGX Hepatocytes Affy Mouse Gene 1.0 ST Exon Level (Oct14) RMA"
+ ],
+ [
"373",
"GSE16780_UCLA_ML0911",
"GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
@@ -2143,6 +2379,11 @@
"SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST (Jun11) RMA"
],
[
+ "702",
+ "SUH_Liv_RMAEx_0611",
+ "SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST Exon Level (Jun11) RMA"
+ ],
+ [
"430",
"EPFLMouseLiverRMA0413",
"EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA"
@@ -2156,56 +2397,6 @@
"432",
"EPFLMouseLiverCDRMA0413",
"EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA"
- ],
- [
- "433",
- "EPFLMouseLiverBothExRMA0413",
- "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level **"
- ],
- [
- "256",
- "GenEx_BXD_liverEt_M5_0912",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Both Sexes **"
- ],
- [
- "257",
- "GenEx_BXD_liverEt_M5M_0912",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Males **"
- ],
- [
- "258",
- "GenEx_BXD_liverEt_M5F_0912",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Females **"
- ],
- [
- "307",
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "308",
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "309",
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "310",
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "311",
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "312",
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
]
],
"Lung mRNA": [
@@ -2218,21 +2409,6 @@
"161",
"HZI_0408_M",
"HZI Lung M430v2 (Apr08) MAS5"
- ],
- [
- "468",
- "HZI_PR8M-F_1113",
- "HZI PR8M-Infected Lungs Females RNAseq (Nov13) RPKM **"
- ],
- [
- "387",
- "HZI_PR8M_Q_0612",
- "HZI PR8M-Infected Lungs Agilent4x44 (Apr12) Quantile Females **"
- ],
- [
- "424",
- "HZI_LTCF_0313",
- "HZI Lung Time Course Flu PR8M (Mar13) Schughart **"
]
],
"Midbrain mRNA": [
@@ -2242,18 +2418,6 @@
"VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile"
]
],
- "Muscle Metabolome": [
- [
- "477",
- "EPFL-LISP_MusPMetHFD1213",
- "EPFL/LISP BXD Muscle Polar Metabolites HFD (Jun14) **"
- ],
- [
- "478",
- "EPFL-LISP_MusPMetCD1213",
- "EPFL/LISP BXD Muscle Polar Metabolites CD (Jun14) **"
- ]
- ],
"Muscle mRNA": [
[
"395",
@@ -2328,31 +2492,6 @@
"156",
"VCUSalo_1007_R",
"VCU BXD NAc Sal M430 2.0 (Oct07) RMA"
- ],
- [
- "155",
- "VCUEtOH_1007_R",
- "VCU BXD NAc EtOH M430 2.0 (Oct07) RMA **"
- ],
- [
- "154",
- "VCUSal_1007_R",
- "VCU BXD NAc EtOH vs Sal M430 2.0 (Oct07) Sscore **"
- ],
- [
- "409",
- "VCU_NAc_Air_0113_R",
- "VCU BXD NAc CIE Air M430 2.0 (Jan13) RMA **"
- ],
- [
- "408",
- "VCU_NAc_Et_0113_R",
- "VCU BXD NAc CIE EtOH M430 2.0 (Jan13) RMA **"
- ],
- [
- "407",
- "VCU_NAc_AvE_0113_Ss",
- "VCU BXD NAc EtOH vs CIE Air M430 2.0 (Jan13) Sscore **"
]
],
"Phenotypes": [
@@ -2384,13 +2523,6 @@
"INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Exon Level"
]
],
- "Popliteal Lymph Node mRNA": [
- [
- "390",
- "STJ_PLN_0912",
- "St Jude BXD Popliteal Lymph Node Affy HT MG-430 PM (Sep12) RMA **"
- ]
- ],
"Prefrontal Cortex mRNA": [
[
"135",
@@ -2406,33 +2538,18 @@
"137",
"VCUSal_1006_R",
"VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
- "299",
- "VCU_PF_AvE_0111_Ss",
- "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ],
- [
- "300",
- "VCU_PF_Et_0111_R",
- "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
- ],
- [
- "301",
- "VCU_PF_Air_0111_R",
- "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
]
],
"Retina mRNA": [
[
- "302",
- "G2NEI_ILM_Retina_BXD_RI0410",
- "Normal HEI Retina (April 2010) RankInv"
+ "709",
+ "DoDCMMRPRetMoGene2_0515",
+ "DoD CDMRP Retina Affy MoGene 2.0 ST (May15) RMA Gene Level"
],
[
- "267",
- "Illum_Retina_BXD_RankInv0410",
- "Full HEI Retina (April 2010) RankInv"
+ "710",
+ "DoDCMMRPRetMoGene2Ex_0515",
+ "DoD CDMRP Retina Affy MoGene 2.0 ST (May15) RMA Exon Level"
],
[
"385",
@@ -2440,49 +2557,14 @@
"ONC HEI Retina (April 2012) RankInv"
],
[
- "471",
- "DoDTATRCRetMoGene2_1313",
- "DoD TATRC Retina Affy MoGene 2.0 ST (Dec13) RMA"
- ],
- [
- "472",
- "DoDTATRCRetExMoGene2_1313",
- "DoD TATRC Retina Affy MoGene 2.0 ST (Dec13) RMA Exon Level"
- ],
- [
- "434",
- "ONCRetMoGene2_0413",
- "DoD TATRC Retina Affy MoGene 2.0 ST (Oct13) RMA **"
- ],
- [
- "435",
- "ONCRetExMoGene2_0413",
- "DoD TATRC Retina Affy MoGene 2.0 ST (Oct13) RMA Exon Level **"
- ],
- [
- "479",
- "DoDTATRCRetBLMoGene2_1213",
- "DoD TATRC Retina Blast Affy MoGene 2.0 ST (Dec13) RMA **"
- ],
- [
- "480",
- "DoDTATRCRetBLExMoGene2_1213",
- "DoD TATRC Retina Blast Affy MoGene 2.0 ST (Dec13) RMA Exon Level **"
- ],
- [
- "386",
- "B6D2ONCILM_0412",
- "B6D2 ONC Retina (April 2012) RankInv **"
- ],
- [
- "371",
- "HEIONCvsCRetILM6_0911",
- "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **"
+ "302",
+ "G2NEI_ILM_Retina_BXD_RI0410",
+ "Normal HEI Retina (April 2010) RankInv"
],
[
- "372",
- "G2HEIONCRetILM6_0911",
- "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
+ "267",
+ "Illum_Retina_BXD_RankInv0410",
+ "Full HEI Retina (April 2010) RankInv"
]
],
"Spleen mRNA": [
@@ -2492,6 +2574,16 @@
"UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
],
[
+ "773",
+ "UTHSC_SPLs1_RMA_1210",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Set1"
+ ],
+ [
+ "774",
+ "UTHSC_SPLs2_RMA_1210",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Set2"
+ ],
+ [
"286",
"UTHSC_SPL_RMA_1210M",
"UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Males"
@@ -2520,15 +2612,20 @@
"227",
"IoP_SPL_RMA_0509",
"IoP Affy MOE 430v2 Spleen (May09) RMA"
- ],
- [
- "216",
- "Illum_BXD_Spl_1108",
- "UWA Illumina Spleen (Nov08) RSN **"
]
],
"Striatum mRNA": [
[
+ "376",
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv"
+ ],
+ [
+ "377",
+ "DevStriatum_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv"
+ ],
+ [
"399",
"Striatum_Exon_1212",
"HQF Striatum Affy Mouse Exon 1.0ST Gene Level (Dec09) RMA"
@@ -2577,26 +2674,6 @@
"66",
"SA_M2_0405_RR",
"HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
- ],
- [
- "376",
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "377",
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "277",
- "DevStriatum_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "276",
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
]
],
"T Cell (helper) mRNA": [
@@ -2612,30 +2689,6 @@
"RTC_1106_R",
"HZI Treg M430v2 (Feb11) RMA"
]
- ],
- "Thymus mRNA": [
- [
- "217",
- "Illum_BXD_Thy_1108",
- "UWA Illumina Thymus (Nov08) RSN **"
- ]
- ],
- "Ventral Tegmental Area mRNA": [
- [
- "229",
- "VCUEtOH_0609_R",
- "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **"
- ],
- [
- "228",
- "VCUSal_0609_R",
- "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **"
- ],
- [
- "230",
- "VCUEtvsSal_0609_R",
- "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **"
- ]
]
},
"BXH": {
@@ -2701,22 +2754,47 @@
]
]
},
+ "CIE-INIA": {
+ "LCM Brain Regions mRNA": [
+ [
+ "776",
+ "INIA_LCM_CAB_1215",
+ "INIA LCM (11 Regions) CIE/AIR/BAS RNA-seq Transcript Level (Dec15)"
+ ],
+ [
+ "772",
+ "INIA_LCM_1215",
+ "INIA LCM (11 Regions) CIE/AIR RNA-seq Transcript Level (Dec15)"
+ ],
+ [
+ "775",
+ "INIA_LCMB_1215",
+ "INIA LCM (11 Regions) BASELINE RNA-seq Transcript Level (Dec15)"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "None",
+ "CIE-INIAPublish",
+ "CIE-INIA Published Phenotypes"
+ ]
+ ]
+ },
+ "CMS": {
+ "Phenotypes": [
+ [
+ "None",
+ "CMSPublish",
+ "CMS Published Phenotypes"
+ ]
+ ]
+ },
"CTB6F2": {
"Adipose mRNA": [
[
"170",
"UCLA_CTB6B6CTF2_ADIPOSE_2005",
"UCLA CTB6/B6CTF2 Adipose (2005) mlratio"
- ],
- [
- "189",
- "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
- "UCLA CTB6B6CTF2 Adipose Female mlratio **"
- ],
- [
- "188",
- "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
- "UCLA CTB6B6CTF2 Adipose Male mlratio **"
]
],
"Brain mRNA": [
@@ -2748,16 +2826,6 @@
"172",
"UCLA_CTB6B6CTF2_LIVER_2005",
"UCLA CTB6/B6CTF2 Liver (2005) mlratio"
- ],
- [
- "193",
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "192",
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
]
],
"Muscle mRNA": [
@@ -2765,16 +2833,6 @@
"173",
"UCLA_CTB6B6CTF2_MUSCLE_2005",
"UCLA CTB6/B6CTF2 Muscle (2005) mlratio"
- ],
- [
- "195",
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
- "194",
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
]
],
"Phenotypes": [
@@ -2869,6 +2927,31 @@
],
"Hippocampus mRNA": [
[
+ "219",
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ],
+ [
+ "212",
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "214",
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "211",
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "213",
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
"143",
"Illum_LXS_Hipp_loess0807",
"Hippocampus Illumina (Aug07) LOESS"
@@ -2902,31 +2985,6 @@
"133",
"Hipp_Illumina_RankInv_0507",
"Hippocampus Illumina (May07) RankInv"
- ],
- [
- "219",
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
- ],
- [
- "212",
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "214",
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "211",
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "213",
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
]
],
"Phenotypes": [
@@ -2938,19 +2996,9 @@
],
"Prefrontal Cortex mRNA": [
[
- "131",
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
"130",
"VCUSal_0806_R",
"VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
- ],
- [
- "132",
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
]
]
},
@@ -3064,20 +3112,7 @@
]
]
},
- "Scripps-2013": {
- "Anterior Cingulate Cortex mRNA": [
- [
- "450",
- "ScrBXDACC4G0513",
- "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Gene Level **"
- ],
- [
- "451",
- "ScrBXDACC4GEx0513",
- "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Exon Level **"
- ]
- ]
- }
+ "Scripps-2013": {}
},
"rat": {
"HSNIH": {
@@ -3279,7 +3314,11 @@
],
[
"GTEx",
- "All Tissues, RNA-Seq GTEx v3"
+ "GTEx v3 All Tissues, RNA-Seq"
+ ],
+ [
+ "GTEx_v5",
+ "GTEx v5 All Tissues, RNA-Seq"
],
[
"HB",
@@ -3302,12 +3341,6 @@
"Brain, Development: Normal Gene Expression (Yale/Sestan)"
]
],
- "macaque monkey": [
- [
- "Macaca-fasicularis",
- "Macaca fasicularis (Cynomolgus monkey)"
- ]
- ],
"mouse": [
[
"AKXD",
@@ -3331,7 +3364,7 @@
],
[
"B6D2RI",
- "B6D2RI Aged"
+ "BXD Aged"
],
[
"BDF2-1999",
@@ -3362,6 +3395,14 @@
"Reduced Complexity Cross (B6JxB6N F2)"
],
[
+ "CIE-INIA",
+ "Chronic Intermittent Ethanol"
+ ],
+ [
+ "CMS",
+ "Chronic Mild Stress"
+ ],
+ [
"CTB6F2",
"CastB6/B6Cast F2 UCLA"
],
@@ -3439,10 +3480,6 @@
"Human"
],
[
- "macaque monkey",
- "Macaque monkey"
- ],
- [
"mouse",
"Mouse"
],
@@ -3565,6 +3602,10 @@
],
"AD-cases-controls-Myers": [
[
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
"Genotypes",
"Genotypes"
],
@@ -3575,6 +3616,10 @@
],
"Aging-Brain-UCI": [
[
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
"Entorhinal Cortex mRNA",
"Entorhinal Cortex mRNA"
],
@@ -3615,10 +3660,6 @@
"Phenotypes"
],
[
- "Methylation",
- "Methylation"
- ],
- [
"Newborn Cord Blood mRNA",
"Newborn Cord Blood mRNA"
]
@@ -3819,6 +3860,220 @@
"Whole Blood mRNA"
]
],
+ "GTEx_v5": [
+ [
+ "Adrenal Gland mRNA",
+ "Adrenal Gland mRNA"
+ ],
+ [
+ "Amygdala mRNA",
+ "Amygdala mRNA"
+ ],
+ [
+ "Anterior Cingulate Cortex mRNA",
+ "Anterior Cingulate Cortex mRNA"
+ ],
+ [
+ "Aorta mRNA",
+ "Aorta mRNA"
+ ],
+ [
+ "Bladder mRNA",
+ "Bladder mRNA"
+ ],
+ [
+ "Bone Marrow mRNA",
+ "Bone Marrow mRNA"
+ ],
+ [
+ "Breast - Mammary Tissue mRNA",
+ "Breast - Mammary Tissue mRNA"
+ ],
+ [
+ "Caudate mRNA",
+ "Caudate mRNA"
+ ],
+ [
+ "Cells - EBV-Transformed Lymphocytes mRNA",
+ "Cells - EBV-Transformed Lymphocytes mRNA"
+ ],
+ [
+ "Cells - Transformed Fibroblasts mRNA",
+ "Cells - Transformed Fibroblasts mRNA"
+ ],
+ [
+ "Cerebellar Cortex mRNA",
+ "Cerebellar Cortex mRNA"
+ ],
+ [
+ "Cerebellar Hemisphere mRNA",
+ "Cerebellar Hemisphere mRNA"
+ ],
+ [
+ "Cerebellum mRNA",
+ "Cerebellum mRNA"
+ ],
+ [
+ "Cervix mRNA",
+ "Cervix mRNA"
+ ],
+ [
+ "Colon - Sigmoid mRNA",
+ "Colon - Sigmoid mRNA"
+ ],
+ [
+ "Colon - Transverse mRNA",
+ "Colon - Transverse mRNA"
+ ],
+ [
+ "Coronary mRNA",
+ "Coronary mRNA"
+ ],
+ [
+ "Esophagus - Gastroesophageal mRNA",
+ "Esophagus - Gastroesophageal mRNA"
+ ],
+ [
+ "Esophagus - Mucosa mRNA",
+ "Esophagus - Mucosa mRNA"
+ ],
+ [
+ "Esophagus - Muscularis mRNA",
+ "Esophagus - Muscularis mRNA"
+ ],
+ [
+ "Fallopian Tube mRNA",
+ "Fallopian Tube mRNA"
+ ],
+ [
+ "Frontal Cortex mRNA",
+ "Frontal Cortex mRNA"
+ ],
+ [
+ "Heart - Atrial Appendage mRNA",
+ "Heart - Atrial Appendage mRNA"
+ ],
+ [
+ "Heart - Left Ventricle mRNA",
+ "Heart - Left Ventricle mRNA"
+ ],
+ [
+ "Hippocampus mRNA",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Hypothalamus mRNA",
+ "Hypothalamus mRNA"
+ ],
+ [
+ "Kidney mRNA",
+ "Kidney mRNA"
+ ],
+ [
+ "Liver mRNA",
+ "Liver mRNA"
+ ],
+ [
+ "Lung mRNA",
+ "Lung mRNA"
+ ],
+ [
+ "Muscle mRNA",
+ "Muscle mRNA"
+ ],
+ [
+ "Nerve - Tibial mRNA",
+ "Nerve - Tibial mRNA"
+ ],
+ [
+ "Nucleus Accumbens mRNA",
+ "Nucleus Accumbens mRNA"
+ ],
+ [
+ "Ovary mRNA",
+ "Ovary mRNA"
+ ],
+ [
+ "Pancreas mRNA",
+ "Pancreas mRNA"
+ ],
+ [
+ "Pituitary Gland mRNA",
+ "Pituitary Gland mRNA"
+ ],
+ [
+ "Prostate mRNA",
+ "Prostate mRNA"
+ ],
+ [
+ "Putamen mRNA",
+ "Putamen mRNA"
+ ],
+ [
+ "Salivary Gland mRNA",
+ "Salivary Gland mRNA"
+ ],
+ [
+ "Skin - Not Sun Exposed (Suprapubic) mRNA",
+ "Skin - Not Sun Exposed (Suprapubic) mRNA"
+ ],
+ [
+ "Skin - Sun Exposed (Lower leg) mRNA",
+ "Skin - Sun Exposed (Lower leg) mRNA"
+ ],
+ [
+ "Small Intestine - Terminal Ileum mRNA",
+ "Small Intestine - Terminal Ileum mRNA"
+ ],
+ [
+ "Spinal Cord mRNA",
+ "Spinal Cord mRNA"
+ ],
+ [
+ "Spleen mRNA",
+ "Spleen mRNA"
+ ],
+ [
+ "Stomach mRNA",
+ "Stomach mRNA"
+ ],
+ [
+ "Subcutaneous mRNA",
+ "Subcutaneous mRNA"
+ ],
+ [
+ "Substantia Nigra mRNA",
+ "Substantia Nigra mRNA"
+ ],
+ [
+ "Testis mRNA",
+ "Testis mRNA"
+ ],
+ [
+ "Thyroid mRNA",
+ "Thyroid mRNA"
+ ],
+ [
+ "Tibial mRNA",
+ "Tibial mRNA"
+ ],
+ [
+ "Uterus mRNA",
+ "Uterus mRNA"
+ ],
+ [
+ "Vagina mRNA",
+ "Vagina mRNA"
+ ],
+ [
+ "Visceral mRNA",
+ "Visceral mRNA"
+ ],
+ [
+ "Whole Blood mRNA",
+ "Whole Blood mRNA"
+ ]
+ ],
"HB": [
[
"Cerebellum mRNA",
@@ -3857,6 +4112,10 @@
],
"HSB": [
[
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
"Amygdala mRNA",
"Amygdala mRNA"
],
@@ -3922,30 +4181,6 @@
]
]
},
- "macaque monkey": {
- "Macaca-fasicularis": [
- [
- "Amygdala mRNA",
- "Amygdala mRNA"
- ],
- [
- "Brain mRNA",
- "Brain mRNA"
- ],
- [
- "Hippocampus mRNA",
- "Hippocampus mRNA"
- ],
- [
- "Nucleus Accumbens mRNA",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
- ]
- ]
- },
"mouse": {
"AKXD": [
[
@@ -4009,18 +4244,18 @@
],
"B6D2F2-PSU": [
[
- "Genotypes",
- "Genotypes"
+ "Phenotypes",
+ "Phenotypes"
],
[
- "Muscle mRNA",
- "Muscle mRNA"
+ "Genotypes",
+ "Genotypes"
]
],
"B6D2RI": [
[
- "Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Phenotypes",
+ "Phenotypes"
]
],
"BDF2-1999": [
@@ -4045,6 +4280,10 @@
],
"BHF2": [
[
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
"Genotypes",
"Genotypes"
],
@@ -4059,10 +4298,6 @@
[
"Liver mRNA",
"Liver mRNA"
- ],
- [
- "Muscle mRNA",
- "Muscle mRNA"
]
],
"BHHBF2": [
@@ -4129,20 +4364,20 @@
"Eye mRNA"
],
[
- "Gastrointestinal mRNA",
- "Gastrointestinal mRNA"
+ "Fecal Metabolome",
+ "Fecal Metabolome"
],
[
- "Heart mRNA",
- "Heart mRNA"
+ "Gastrointestinal mRNA",
+ "Gastrointestinal mRNA"
],
[
"Hematopoietic Cells mRNA",
"Hematopoietic Cells mRNA"
],
[
- "Hippocampus microRNA",
- "Hippocampus microRNA"
+ "Hippocampal Precursor Cells mRNA",
+ "Hippocampal Precursor Cells mRNA"
],
[
"Hippocampus mRNA",
@@ -4157,10 +4392,6 @@
"Kidney mRNA"
],
[
- "Leucocytes mRNA",
- "Leucocytes mRNA"
- ],
- [
"Liver Metabolome",
"Liver Metabolome"
],
@@ -4181,10 +4412,6 @@
"Midbrain mRNA"
],
[
- "Muscle Metabolome",
- "Muscle Metabolome"
- ],
- [
"Muscle mRNA",
"Muscle mRNA"
],
@@ -4201,10 +4428,6 @@
"Pituitary Gland mRNA"
],
[
- "Popliteal Lymph Node mRNA",
- "Popliteal Lymph Node mRNA"
- ],
- [
"Prefrontal Cortex mRNA",
"Prefrontal Cortex mRNA"
],
@@ -4227,14 +4450,6 @@
[
"T Cell (regulatory) mRNA",
"T Cell (regulatory) mRNA"
- ],
- [
- "Thymus mRNA",
- "Thymus mRNA"
- ],
- [
- "Ventral Tegmental Area mRNA",
- "Ventral Tegmental Area mRNA"
]
],
"BXH": [
@@ -4269,6 +4484,22 @@
"Genotypes"
]
],
+ "CIE-INIA": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "LCM Brain Regions mRNA",
+ "LCM Brain Regions mRNA"
+ ]
+ ],
+ "CMS": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ]
+ ],
"CTB6F2": [
[
"Phenotypes",
@@ -4407,12 +4638,7 @@
"Genotypes"
]
],
- "Scripps-2013": [
- [
- "Anterior Cingulate Cortex mRNA",
- "Anterior Cingulate Cortex mRNA"
- ]
- ]
+ "Scripps-2013": []
},
"rat": {
"HSNIH": [
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-03 20:13:32 +0000