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| author | Zachary Sloan | 2013-07-23 17:12:29 -0500 |
|---|---|---|
| committer | Zachary Sloan | 2013-07-23 17:12:29 -0500 |
| commit | 930d8b0cf0c7bf88fee1de95852dfe883418a494 (patch) | |
| tree | 04d542a01dba0c4529f55912ab242a3bc61459aa /wqflask/wqflask | |
| parent | 82f493650909e2351035e26e9dc82b16498beb48 (diff) | |
| download | genenetwork2-930d8b0cf0c7bf88fee1de95852dfe883418a494.tar.gz | |
Fixed a couple issues with he quick_search_table.py script
Added notes on using percona to optimise mysql to gn_installation_notes.txt
Started moving "get_trait_data" to DataSet since it is the same regardless
of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc)
Diffstat (limited to 'wqflask/wqflask')
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/lmm.py | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py index 38a49f12..446683a4 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py @@ -237,6 +237,9 @@ def run(pheno_vector, with Bench("Calculate Kinship"): kinship_matrix = calculate_kinship(genotype_matrix, temp_data) + print("kinship_matrix: ", pf(kinship_matrix)) + print("kinship_matrix.shape: ", pf(kinship_matrix.shape)) + with Bench("Create LMM object"): lmm_ob = LMM(pheno_vector, kinship_matrix) |