diff options
| author | Lei Yan | 2013-05-23 23:01:54 +0000 |
|---|---|---|
| committer | Lei Yan | 2013-05-23 23:01:54 +0000 |
| commit | 8d0c6166a297d2cc89394649b8f56d8c6bf5d0f7 (patch) | |
| tree | 104da8e98f21dc4ac73179c58fd9c17047d0d7de /wqflask/wqflask | |
| parent | 953b41486b035fbe786c7d2675f7b6cf898c12da (diff) | |
| download | genenetwork2-8d0c6166a297d2cc89394649b8f56d8c6bf5d0f7.tar.gz | |
Worked on rewriting the function in data_set.py that gets the sample
values for each trait
Diffstat (limited to 'wqflask/wqflask')
| -rw-r--r-- | wqflask/wqflask/correlation/show_corr_results.py | 5 |
1 files changed, 1 insertions, 4 deletions
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index ee732050..9b1843bd 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -312,9 +312,6 @@ class CorrelationResults(object): self.process_samples(start_vars, self.this_trait.data.keys(), primary_samples) self.target_dataset = data_set.create_dataset(start_vars['corr_dataset']) self.target_dataset.get_trait_data() - # Lei Yan todo - import pdb - pdb.set_trace() correlation_data = collections.defaultdict(list) for trait, values in self.target_dataset.trait_data.iteritems(): values_1 = [] @@ -327,7 +324,7 @@ class CorrelationResults(object): values_2.append(target_value) correlation = calCorrelation(values_1, values_2) correlation_data[trait] = correlation - print ('%s %s' % (trait, correlation)) + print ('correlation result: %s %s' % (trait, correlation)) #XZ, 09/18/2008: get all information about the user selected database. #target_db_name = fd.corr_dataset |