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| author | Alexander Kabui | 2021-04-23 23:22:46 +0300 |
|---|---|---|
| committer | Alexander Kabui | 2021-04-23 23:22:46 +0300 |
| commit | 1b0566d7c9779b979d20c350f66d5628fb55eba6 (patch) | |
| tree | 78ab4e3354911a793810da39e4da98e3048d9229 /wqflask/wqflask | |
| parent | 34e4933de5a1cd444abe618fcfd93b424bf3442e (diff) | |
| download | genenetwork2-1b0566d7c9779b979d20c350f66d5628fb55eba6.tar.gz | |
debugging for fetching probe data
Diffstat (limited to 'wqflask/wqflask')
| -rw-r--r-- | wqflask/wqflask/correlation/correlation_gn3_api.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/views.py | 3 |
2 files changed, 4 insertions, 1 deletions
diff --git a/wqflask/wqflask/correlation/correlation_gn3_api.py b/wqflask/wqflask/correlation/correlation_gn3_api.py index e7394647..51bf5fb5 100644 --- a/wqflask/wqflask/correlation/correlation_gn3_api.py +++ b/wqflask/wqflask/correlation/correlation_gn3_api.py @@ -78,7 +78,7 @@ def compute_correlation(start_vars, method="pearson"): # } sample_data = process_samples( start_vars, this_dataset.group.samplelist) - target_dataset.get_trait_data(list(sample_data.keys())) + target_dataset.fetch_probe_trait_data(list(sample_data.keys())) this_trait = retrieve_sample_data(this_trait, this_dataset) print("Creating dataset and trait took", time.time()-initial_time) diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index 072db466..2c239425 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -881,7 +881,10 @@ def network_graph_page(): def corr_compute_page(): logger.info("In corr_compute, request.form is:", pf(request.form)) logger.info(request.url) + import time + initial_time = time.time() correlation_results = compute_correlation(request.form) + print(">>>>Time taken by this endpoint",time.time()-initial_time) return render_template("demo_correlation_page.html",correlation_results=correlation_results[1:20]) @app.route("/corr_matrix", methods=('POST',)) |