Removed several unused files from the base folder and their references in other files

15 files changed, 0 insertions, 359 deletions

diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py
index a2958108..df1edb13 100755
--- a/wqflask/wqflask/search_results.py
+++ b/wqflask/wqflask/search_results.py
@@ -37,8 +37,6 @@ from dbFunction import webqtlDatabaseFunction
 
 from utility import formatting
 
-#from base.JinjaPage import JinjaEnv, JinjaPage
-
 #class QuickSearchResult(object):
     #def __init__(self, key, result_fields):
     #    self.key = key
diff --git a/wqflask/wqflask/static/new/javascript/css/bar_chart.css b/wqflask/wqflask/static/new/javascript/css/bar_chart.css
deleted file mode 100755
index 78d31eee..00000000
--- a/wqflask/wqflask/static/new/javascript/css/bar_chart.css
+++ /dev/null
@@ -1,15 +0,0 @@
-.barchart .axis path,

-.barchart .axis line {

-  fill: none;

-  stroke: #000;

-  shape-rendering: crispEdges;

-}

-

-.bar {

-  fill: steelblue;

-  shape-rendering: crispEdges;

-}

-/*

-.x.axis path {

-  display: none;

-}*/
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/css/box_plot.css b/wqflask/wqflask/static/new/javascript/css/box_plot.css
deleted file mode 100755
index 4c743b33..00000000
--- a/wqflask/wqflask/static/new/javascript/css/box_plot.css
+++ /dev/null
@@ -1,20 +0,0 @@
-.box {

-  font: 10px sans-serif;

-}

-

-.box line,

-.box rect,

-.box circle {

-  fill: #fff;

-  stroke: #000;

-  stroke-width: 1.5px;

-}

-

-.box .center {

-  stroke-dasharray: 3,3;

-}

-

-.box .outlier {

-  fill: none;

-  stroke: #ccc;

-}
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/css/charts.css b/wqflask/wqflask/static/new/javascript/css/charts.css
deleted file mode 100644
index 5f2d4d23..00000000
--- a/wqflask/wqflask/static/new/javascript/css/charts.css
+++ /dev/null
@@ -1,28 +0,0 @@
-body {

-  font-family: sans-serif;

-}

-

-svg {

-  margin-top:  10px;

-  margin-left: 50px;

-}

-

-.line {

-  stroke-width: 1;

-  fill: none;

-}

-

-text {

- font-family: sans-serif;

- font-size: 11pt;

-}

-

-p {

- font-family: sans-serif;

- font-size: 12pt;

-}

-

-p#caption {

-  margin-left: 100px;

-  width: 500px;

-}

diff --git a/wqflask/wqflask/static/new/javascript/css/corr_matrix.css b/wqflask/wqflask/static/new/javascript/css/corr_matrix.css
deleted file mode 100755
index f4838f77..00000000
--- a/wqflask/wqflask/static/new/javascript/css/corr_matrix.css
+++ /dev/null
@@ -1,12 +0,0 @@
-.vertical_label {
-    -webkit-transform: rotate(-90deg);
-       -moz-transform: rotate(-90deg);
-        -ms-transform: rotate(-90deg);
-         -o-transform: rotate(-90deg);
-            trasnform: rotate(-90deg);
-              color: #000
-              font-size: 22px;
-              height: 50px;
-              width: 100px;
-    float: left; 
-}
diff --git a/wqflask/wqflask/static/new/javascript/css/corr_scatter_plot.css b/wqflask/wqflask/static/new/javascript/css/corr_scatter_plot.css
deleted file mode 100755
index c62d4c9a..00000000
--- a/wqflask/wqflask/static/new/javascript/css/corr_scatter_plot.css
+++ /dev/null
@@ -1,13 +0,0 @@
-.chart {
-
-}
-
-.main text {
-    font: 10px sans-serif;	
-}
-
-.axis line, .axis path {
-    shape-rendering: crispEdges;
-    stroke: black;
-    fill: none;
-}
diff --git a/wqflask/wqflask/static/new/javascript/css/d3-tip.min.css b/wqflask/wqflask/static/new/javascript/css/d3-tip.min.css
deleted file mode 100644
index 3d253caf..00000000
--- a/wqflask/wqflask/static/new/javascript/css/d3-tip.min.css
+++ /dev/null
@@ -1 +0,0 @@
-.d3-tip{line-height:1;font-weight:bold;padding:12px;background:rgba(0,0,0,0.8);color:#fff;border-radius:2px;pointer-events:none}.d3-tip:after{box-sizing:border-box;display:inline;font-size:10px;width:100%;line-height:1;color:rgba(0,0,0,0.8);position:absolute;pointer-events:none}.d3-tip.n:after{content:"\25BC";margin:-1px 0 0 0;top:100%;left:0;text-align:center}.d3-tip.e:after{content:"\25C0";margin:-4px 0 0 0;top:50%;left:-8px}.d3-tip.s:after{content:"\25B2";margin:0 0 1px 0;top:-8px;left:0;text-align:center}.d3-tip.w:after{content:"\25B6";margin:-4px 0 0 -1px;top:50%;left:100%}
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/css/interval_mapping.css b/wqflask/wqflask/static/new/javascript/css/interval_mapping.css
deleted file mode 100755
index 4a55d2e3..00000000
--- a/wqflask/wqflask/static/new/javascript/css/interval_mapping.css
+++ /dev/null
@@ -1,32 +0,0 @@
-.chr_interval_map .y_axis path,

-.chr_interval_map .y_axis line {

-    fill: none;

-    stroke: black;

-    shape-rendering: crispEdges;

-}

-.chr_interval_map .y_axis text {

-    font-family: sans-serif;

-    font-size: 14px;

-}

-

-.chr_interval_map .x_axis path,

-.chr_interval_map .x_axis line {

-    fill: none;

-    stroke: black;

-    shape-rendering: crispEdges;

-}

-.chr_interval_map .x_axis text {

-    text-anchor: end;

-    font-family: sans-serif;

-    font-size: 8px;

-}

-/*

-interval_map rect {

-    stroke: WhiteSmoke;

-    fill: white;

-}

-

-interval_map path {

-    stroke: steelblue;

-    stroke-width: 1;

-}*/
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/css/main.css b/wqflask/wqflask/static/new/javascript/css/main.css
deleted file mode 100755
index 017bbdb8..00000000
--- a/wqflask/wqflask/static/new/javascript/css/main.css
+++ /dev/null
@@ -1,4 +0,0 @@
-.security_box {
-    padding-left: 30px;
-    padding-right: 30px;
-}
diff --git a/wqflask/wqflask/static/new/javascript/css/marker_regression.css b/wqflask/wqflask/static/new/javascript/css/marker_regression.css
deleted file mode 100755
index d81b5021..00000000
--- a/wqflask/wqflask/static/new/javascript/css/marker_regression.css
+++ /dev/null
@@ -1,38 +0,0 @@
-.chr_manhattan_plot .y_axis path,
-.chr_manhattan_plot .y_axis line {
-    fill: none;
-    stroke: black;
-    shape-rendering: crispEdges;
-}
-.chr_manhattan_plot .y_axis text {
-    font-family: sans-serif;
-    font-size: 14px;
-}
-
-.chr_manhattan_plot .x_axis path,
-.chr_manhattan_plot .x_axis line {
-    fill: none;
-    stroke: black;
-    shape-rendering: crispEdges;
-}
-
-.chr_manhattan_plot .x_axis text {
-    text-anchor: end;
-    font-family: sans-serif;
-    font-size: 10px;
-}
-
-rect.pane {
-  cursor: move;
-  fill: none;
-  pointer-events: all;
-}
-
-/*rect {
-    stroke: WhiteSmoke;
-    fill: lightgrey;
-}*/
-/*rect {
-    stroke: WhiteSmoke;
-    fill: Azure;
-}*/
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/css/panelutil.css b/wqflask/wqflask/static/new/javascript/css/panelutil.css
deleted file mode 100644
index ccd7eb01..00000000
--- a/wqflask/wqflask/static/new/javascript/css/panelutil.css
+++ /dev/null
@@ -1,91 +0,0 @@
-

-/* figures will always be within a div with class="qtlcharts" */

-div.qtlcharts {

-  font-family: sans-serif;

-  font-size: 11pt;

-}

-

-div.qtlcharts .title text {

-  dominant-baseline: middle;

-  fill: blue;

-  text-anchor: middle;

-}

-

-div.qtlcharts .y.axis text {

-  dominant-baseline: middle;

-  text-anchor: end;

-}

-

-div.qtlcharts .y.axis text.title {

-  text-anchor: middle;

-  fill: slateblue;

-}

-

-div.qtlcharts .x.axis text {

-  dominant-baseline: hanging;

-  text-anchor: middle;

-}

-

-div.qtlcharts .x.axis text.title {

-  fill: slateblue;

-}

-

-/*div.qtlcharts line.axis.grid {

-  fill: none;

-  stroke-width: 1;

-  pointer-events: none;

-}

-

-div.qtlcharts line.x.axis.grid {

-  stroke: rgb(200, 200, 200);

-  stroke-width: 3;

-}

-

-div.qtlcharts line.y.axis.grid {

-  stroke: white;

-}*/

-

-div.qtlcharts .extent {

-  fill: #cac;

-  opacity: 0.3;

-}

-

-div.qtlcharts circle.selected {

-  fill: hotpink;

-  opacity: 1;

-}

-

-div.qtlcharts a {

-  color: #08c;

-  text-decoration: none;

-}

-

-div.qtlcharts a:hover {

-  color: #333;

-  text-decoration: underline;

-}

-

-

-/* figure captions */

-.caption {

-  font-family: Sans-serif;

-  font-size: 11pt;

-  margin-left: 60px;

-  width: 600px;

-}

-

-

-/* d3 tip for tool tips */

-.d3-tip {

-  background: darkslateblue;

-  color: #fff;

-  stroke: none;

-  font-weight: bold;

-  font-size: 16px;

-  font-family: sans-serif;

-  padding: 5px;

-}

-

-.d3-tip.e:after {

-  color: darkslateblue;

-}
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/css/parsley.css b/wqflask/wqflask/static/new/javascript/css/parsley.css
deleted file mode 100755
index 7d244579..00000000
--- a/wqflask/wqflask/static/new/javascript/css/parsley.css
+++ /dev/null
@@ -1,20 +0,0 @@
-/* Adapted from parsleyjs.org/documentation.html#parsleyclasses */
-
-input.parsley-success, textarea.parsley-success {
-  color: #468847 !important;
-  background-color: #DFF0D8 !important;
-  border: 1px solid #D6E9C6 !important;
-}
-input.parsley-error, textarea.parsley-error {
-  color: #B94A48 !important;
-  background-color: #F2DEDE !important;
-  border: 1px solid #EED3D7 !important;
-}
-ul.parsley-error-list {
-    font-size: 11px;
-    margin: 2px;
-    list-style-type:none;
-}
-ul.parsley-error-list li {
-    line-height: 11px;
-}
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/css/scatter-matrix.css b/wqflask/wqflask/static/new/javascript/css/scatter-matrix.css
deleted file mode 100644
index 147903be..00000000
--- a/wqflask/wqflask/static/new/javascript/css/scatter-matrix.css
+++ /dev/null
@@ -1,40 +0,0 @@
-#scatter-matrix { font-size: 14px; }
-
-.axis { shape-rendering: crispEdges; }
-.axis line { stroke: #ddd; stroke-width: 1px; }
-.axis path { display: none; }
-.axis text { font-size: 0.8em; }
-
-rect.extent { fill: #000; fill-opacity: .125; stroke: #fff; }
-rect.frame { fill: #fff; fill-opacity: .7; stroke: #aaa; }
-
-circle { fill: #ccc; fill-opacity: .5; }
-
-.legend circle { fill-opacity: 1; }
-.legend text { font-size: 18px; font-style: oblique; }
-
-.cell text { pointer-events: none; }
-
-.color-0  { fill: #800; }
-.color-1  { fill: #080; }
-.color-2  { fill: #008; }
-.color-3  { fill: #440; }
-.color-4  { fill: #044; }
-.color-5  { fill: #404; }
-.color-6  { fill: #400; }
-.color-7  { fill: #040; }
-.color-8  { fill: #004; }
-.color-9  { fill: #cc0; }
-.color-10 { fill: #0cc; }
-.color-11 { fill: #c0c; }
-.color-12 { fill: #880; }
-.color-13 { fill: #088; }
-.color-14 { fill: #808; }
-.color-15 { fill: #c00; }
-.color-16 { fill: #0c0; }
-.color-17 { fill: #00c; }
-
-.scatter-matrix-filter-control ul { list-style: none; padding-left: 10px; }
-.scatter-matrix-variable-control ul { list-style: none; padding-left: 10px; }
-.scatter-matrix-drill-control ul { list-style: none; padding-left: 10px; }
-
diff --git a/wqflask/wqflask/static/new/javascript/css/show_trait.css b/wqflask/wqflask/static/new/javascript/css/show_trait.css
deleted file mode 100644
index 9fc82a85..00000000
--- a/wqflask/wqflask/static/new/javascript/css/show_trait.css
+++ /dev/null
@@ -1,7 +0,0 @@
-tr .outlier {
-    background-color: #ffff99;
-}
-
-#bar_chart_container {
-    overflow-x:scroll;
-}
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/css/table.css b/wqflask/wqflask/static/new/javascript/css/table.css
deleted file mode 100755
index 1910ef88..00000000
--- a/wqflask/wqflask/static/new/javascript/css/table.css
+++ /dev/null
@@ -1,36 +0,0 @@
-/* Adapted from http://coding.smashingmagazine.com/2008/08/13/top-10-css-table-designs/ */
-
-.one-column-emphasis
-{
-    font-family: "Lucida Sans Unicode", "Lucida Grande", Sans-Serif;
-    font-size: 12px;
-    line-height: 1.6em;
-    margin: 45px;
-    width: 480px;
-    text-align: left;
-    border-collapse: collapse;
-}
-.one-column-emphasis th
-{
-    font-size: 14px;
-    font-weight: normal;
-    padding: 12px 15px;
-    color: #039;
-}
-.one-column-emphasis td
-{
-    padding: 10px 15px;
-    color: #669;
-    border-top: 1px solid #e8edff;
-}
-.oce-first
-{
-    background: #d0dafd;
-    border-right: 10px solid transparent;
-    border-left: 10px solid transparent;
-}
-.one-column-emphasis tr:hover td
-{
-    color: #339;
-    background: #eff2ff;
-}