new probability plot (using NVD3 library)

* z scores are computed on the client side (using jStat library)
* added Shapiro-Wilk test results

1 files changed, 0 insertions, 408 deletions

diff --git a/wqflask/wqflask/static/new/javascript/probability_plot.js b/wqflask/wqflask/static/new/javascript/probability_plot.js
deleted file mode 100644
index af0f787b..00000000
--- a/wqflask/wqflask/static/new/javascript/probability_plot.js
+++ /dev/null
@@ -1,408 +0,0 @@
-// Generated by CoffeeScript 1.8.0
-var probability_plot;
-
-probability_plot = function() {
-  var axispos, chart, dataByInd, height, margin, nxticks, nyticks, pointcolor, pointsSelect, pointsize, pointstroke, rectcolor, rotate_ylab, title, titlepos, width, xNA, xlab, xlim, xscale, xticks, xvar, yNA, ylab, ylim, yscale, yticks, yvar;
-  width = 800;
-  height = 600;
-  margin = {
-    left: 60,
-    top: 40,
-    right: 40,
-    bottom: 40,
-    inner: 5
-  };
-  axispos = {
-    xtitle: 25,
-    ytitle: 45,
-    xlabel: 5,
-    ylabel: 5
-  };
-  titlepos = 20;
-  xNA = {
-    handle: true,
-    force: false,
-    width: 15,
-    gap: 10
-  };
-  yNA = {
-    handle: true,
-    force: false,
-    width: 15,
-    gap: 10
-  };
-  xlim = null;
-  ylim = null;
-  nxticks = 5;
-  xticks = null;
-  nyticks = 5;
-  yticks = null;
-  rectcolor = d3.rgb(230, 230, 230);
-  pointcolor = null;
-  pointstroke = "black";
-  pointsize = 3;
-  title = "Correlation Scatterplot";
-  xlab = "X";
-  ylab = "Y";
-  rotate_ylab = null;
-  yscale = d3.scale.linear();
-  xscale = d3.scale.linear();
-  xvar = 0;
-  yvar = 1;
-  pointsSelect = null;
-  dataByInd = false;
-  chart = function(selection) {
-    return selection.each(function(data) {
-      var g, gEnter, group, i, indID, indtip, na_value, ngroup, panelheight, paneloffset, panelwidth, points, svg, titlegrp, x, xaxis, xrange, xs, y, yaxis, yrange, ys, _i, _ref, _ref1, _ref2, _results;
-      if (dataByInd) {
-        x = data.data.map(function(d) {
-          return d[xvar];
-        });
-        y = data.data.map(function(d) {
-          return d[yvar];
-        });
-      } else {
-        x = data.data[xvar];
-        y = data.data[yvar];
-      }
-      console.log("x:", x);
-      console.log("y:", y);
-      indID = (_ref = data != null ? data.indID : void 0) != null ? _ref : null;
-      indID = indID != null ? indID : (function() {
-        _results = [];
-        for (var _i = 1, _ref1 = x.length; 1 <= _ref1 ? _i <= _ref1 : _i >= _ref1; 1 <= _ref1 ? _i++ : _i--){ _results.push(_i); }
-        return _results;
-      }).apply(this);
-      console.log("indID:", indID);
-      group = (_ref2 = data != null ? data.group : void 0) != null ? _ref2 : (function() {
-        var _j, _len, _results1;
-        _results1 = [];
-        for (_j = 0, _len = x.length; _j < _len; _j++) {
-          i = x[_j];
-          _results1.push(1);
-        }
-        return _results1;
-      })();
-      ngroup = d3.max(group);
-      group = (function() {
-        var _j, _len, _results1;
-        _results1 = [];
-        for (_j = 0, _len = group.length; _j < _len; _j++) {
-          g = group[_j];
-          _results1.push(g - 1);
-        }
-        return _results1;
-      })();
-      pointcolor = pointcolor != null ? pointcolor : selectGroupColors(ngroup, "dark");
-      pointcolor = expand2vector(pointcolor, ngroup);
-      if (x.every(function(v) {
-        return (v != null) && !xNA.force;
-      })) {
-        xNA.handle = false;
-      }
-      if (y.every(function(v) {
-        return (v != null) && !yNA.force;
-      })) {
-        yNA.handle = false;
-      }
-      if (xNA.handle) {
-        paneloffset = xNA.width + xNA.gap;
-        panelwidth = width - paneloffset;
-      } else {
-        paneloffset = 0;
-        panelwidth = width;
-      }
-      if (yNA.handle) {
-        panelheight = height - (yNA.width + yNA.gap);
-      } else {
-        panelheight = height;
-      }
-      xlim = xlim != null ? xlim : d3.extent(x);
-      ylim = ylim != null ? ylim : d3.extent(y);
-      na_value = d3.min(x.concat(y)) - 100;
-      svg = d3.select(this).selectAll("svg").data([data]);
-      gEnter = svg.enter().append("svg").append("g");
-      svg.attr("width", width + margin.left + margin.right).attr("height", height + margin.top + margin.bottom);
-      g = svg.select("g");
-      g.append("rect").attr("x", paneloffset + margin.left).attr("y", margin.top).attr("height", panelheight).attr("width", panelwidth).attr("fill", rectcolor).attr("stroke", "none");
-      if (xNA.handle) {
-        g.append("rect").attr("x", margin.left).attr("y", margin.top).attr("height", panelheight).attr("width", xNA.width).attr("fill", rectcolor).attr("stroke", "none");
-      }
-      if (xNA.handle && yNA.handle) {
-        g.append("rect").attr("x", margin.left).attr("y", margin.top + height - yNA.width).attr("height", yNA.width).attr("width", xNA.width).attr("fill", rectcolor).attr("stroke", "none");
-      }
-      if (yNA.handle) {
-        g.append("rect").attr("x", margin.left + paneloffset).attr("y", margin.top + height - yNA.width).attr("height", yNA.width).attr("width", panelwidth).attr("fill", rectcolor).attr("stroke", "none");
-      }
-      xrange = [margin.left + paneloffset + margin.inner, margin.left + paneloffset + panelwidth - margin.inner];
-      yrange = [margin.top + panelheight - margin.inner, margin.top + margin.inner];
-      xscale.domain(xlim).range(xrange);
-      yscale.domain(ylim).range(yrange);
-      xs = d3.scale.linear().domain(xlim).range(xrange);
-      ys = d3.scale.linear().domain(ylim).range(yrange);
-      if (xNA.handle) {
-        xscale.domain([na_value].concat(xlim)).range([margin.left + xNA.width / 2].concat(xrange));
-        x = x.map(function(e) {
-          if (e != null) {
-            return e;
-          } else {
-            return na_value;
-          }
-        });
-      }
-      if (yNA.handle) {
-        yscale.domain([na_value].concat(ylim)).range([height + margin.top - yNA.width / 2].concat(yrange));
-        y = y.map(function(e) {
-          if (e != null) {
-            return e;
-          } else {
-            return na_value;
-          }
-        });
-      }
-      yticks = yticks != null ? yticks : ys.ticks(nyticks);
-      xticks = xticks != null ? xticks : xs.ticks(nxticks);
-      titlegrp = g.append("g").attr("class", "title").append("text").attr("x", margin.left + width / 2).attr("y", margin.top - titlepos).text(title);
-      xaxis = g.append("g").attr("class", "x axis");
-      xaxis.selectAll("empty").data(xticks).enter().append("line").attr("x1", function(d) {
-        return xscale(d);
-      }).attr("x2", function(d) {
-        return xscale(d);
-      }).attr("y1", margin.top).attr("y2", margin.top + height).attr("fill", "none").attr("stroke", "white").attr("stroke-width", 1).style("pointer-events", "none");
-      xaxis.selectAll("empty").data(xticks).enter().append("text").attr("x", function(d) {
-        return xscale(d);
-      }).attr("y", margin.top + height + axispos.xlabel).text(function(d) {
-        return formatAxis(xticks)(d);
-      });
-      xaxis.append("text").attr("class", "title").attr("x", margin.left + width / 2).attr("y", margin.top + height + axispos.xtitle).text(xlab);
-      if (xNA.handle) {
-        xaxis.append("text").attr("x", margin.left + xNA.width / 2).attr("y", margin.top + height + axispos.xlabel).text("N/A");
-      }
-      rotate_ylab = rotate_ylab != null ? rotate_ylab : ylab.length > 1;
-      yaxis = g.append("g").attr("class", "y axis");
-      yaxis.selectAll("empty").data(yticks).enter().append("line").attr("y1", function(d) {
-        return yscale(d);
-      }).attr("y2", function(d) {
-        return yscale(d);
-      }).attr("x1", margin.left).attr("x2", margin.left + width).attr("fill", "none").attr("stroke", "white").attr("stroke-width", 1).style("pointer-events", "none");
-      yaxis.selectAll("empty").data(yticks).enter().append("text").attr("y", function(d) {
-        return yscale(d);
-      }).attr("x", margin.left - axispos.ylabel).text(function(d) {
-        return formatAxis(yticks)(d);
-      });
-      yaxis.append("text").attr("class", "title").attr("y", margin.top + height / 2).attr("x", margin.left - axispos.ytitle).text(ylab).attr("transform", rotate_ylab ? "rotate(270," + (margin.left - axispos.ytitle) + "," + (margin.top + height / 2) + ")" : "");
-      if (yNA.handle) {
-        yaxis.append("text").attr("x", margin.left - axispos.ylabel).attr("y", margin.top + height - yNA.width / 2).text("N/A");
-      }
-      indtip = d3.tip().attr('class', 'd3-tip').html(function(d, i) {
-        return indID[i];
-      }).direction('e').offset([0, 10]);
-      svg.call(indtip);
-      points = g.append("g").attr("id", "points");
-      pointsSelect = points.selectAll("empty").data(d3.range(x.length)).enter().append("circle").attr("cx", function(d, i) {
-        return xscale(x[i]);
-      }).attr("cy", function(d, i) {
-        return yscale(y[i]);
-      }).attr("class", function(d, i) {
-        return "pt" + i;
-      }).attr("r", pointsize).attr("fill", function(d, i) {
-        return pointcolor[group[i]];
-      }).attr("stroke", pointstroke).attr("stroke-width", "1").attr("opacity", function(d, i) {
-        if (((x[i] != null) || xNA.handle) && ((y[i] != null) || yNA.handle)) {
-          return 1;
-        }
-        return 0;
-      }).on("mouseover.paneltip", indtip.show).on("mouseout.paneltip", indtip.hide);
-      g.append("rect").attr("x", margin.left + paneloffset).attr("y", margin.top).attr("height", panelheight).attr("width", panelwidth).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
-      if (xNA.handle) {
-        g.append("rect").attr("x", margin.left).attr("y", margin.top).attr("height", panelheight).attr("width", xNA.width).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
-      }
-      if (xNA.handle && yNA.handle) {
-        g.append("rect").attr("x", margin.left).attr("y", margin.top + height - yNA.width).attr("height", yNA.width).attr("width", xNA.width).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
-      }
-      if (yNA.handle) {
-        return g.append("rect").attr("x", margin.left + paneloffset).attr("y", margin.top + height - yNA.width).attr("height", yNA.width).attr("width", panelwidth).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
-      }
-    });
-  };
-  chart.width = function(value) {
-    if (!arguments.length) {
-      return width;
-    }
-    width = value;
-    return chart;
-  };
-  chart.height = function(value) {
-    if (!arguments.length) {
-      return height;
-    }
-    height = value;
-    return chart;
-  };
-  chart.margin = function(value) {
-    if (!arguments.length) {
-      return margin;
-    }
-    margin = value;
-    return chart;
-  };
-  chart.axispos = function(value) {
-    if (!arguments.length) {
-      return axispos;
-    }
-    axispos = value;
-    return chart;
-  };
-  chart.titlepos = function(value) {
-    if (!arguments.length) {
-      return titlepos;
-    }
-    titlepos;
-    return chart;
-  };
-  chart.xlim = function(value) {
-    if (!arguments.length) {
-      return xlim;
-    }
-    xlim = value;
-    return chart;
-  };
-  chart.nxticks = function(value) {
-    if (!arguments.length) {
-      return nxticks;
-    }
-    nxticks = value;
-    return chart;
-  };
-  chart.xticks = function(value) {
-    if (!arguments.length) {
-      return xticks;
-    }
-    xticks = value;
-    return chart;
-  };
-  chart.ylim = function(value) {
-    if (!arguments.length) {
-      return ylim;
-    }
-    ylim = value;
-    return chart;
-  };
-  chart.nyticks = function(value) {
-    if (!arguments.length) {
-      return nyticks;
-    }
-    nyticks = value;
-    return chart;
-  };
-  chart.yticks = function(value) {
-    if (!arguments.length) {
-      return yticks;
-    }
-    yticks = value;
-    return chart;
-  };
-  chart.rectcolor = function(value) {
-    if (!arguments.length) {
-      return rectcolor;
-    }
-    rectcolor = value;
-    return chart;
-  };
-  chart.pointcolor = function(value) {
-    if (!arguments.length) {
-      return pointcolor;
-    }
-    pointcolor = value;
-    return chart;
-  };
-  chart.pointsize = function(value) {
-    if (!arguments.length) {
-      return pointsize;
-    }
-    pointsize = value;
-    return chart;
-  };
-  chart.pointstroke = function(value) {
-    if (!arguments.length) {
-      return pointstroke;
-    }
-    pointstroke = value;
-    return chart;
-  };
-  chart.dataByInd = function(value) {
-    if (!arguments.length) {
-      return dataByInd;
-    }
-    dataByInd = value;
-    return chart;
-  };
-  chart.title = function(value) {
-    if (!arguments.length) {
-      return title;
-    }
-    title = value;
-    return chart;
-  };
-  chart.xlab = function(value) {
-    if (!arguments.length) {
-      return xlab;
-    }
-    xlab = value;
-    return chart;
-  };
-  chart.ylab = function(value) {
-    if (!arguments.length) {
-      return ylab;
-    }
-    ylab = value;
-    return chart;
-  };
-  chart.rotate_ylab = function(value) {
-    if (!arguments.length) {
-      return rotate_ylab;
-    }
-    rotate_ylab = value;
-    return chart;
-  };
-  chart.xvar = function(value) {
-    if (!arguments.length) {
-      return xvar;
-    }
-    xvar = value;
-    return chart;
-  };
-  chart.yvar = function(value) {
-    if (!arguments.length) {
-      return yvar;
-    }
-    yvar = value;
-    return chart;
-  };
-  chart.xNA = function(value) {
-    if (!arguments.length) {
-      return xNA;
-    }
-    xNA = value;
-    return chart;
-  };
-  chart.yNA = function(value) {
-    if (!arguments.length) {
-      return yNA;
-    }
-    yNA = value;
-    return chart;
-  };
-  chart.yscale = function() {
-    return yscale;
-  };
-  chart.xscale = function() {
-    return xscale;
-  };
-  chart.pointsSelect = function() {
-    return pointsSelect;
-  };
-  return chart;
-};
-
-probability_plot();