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author | pjotrp | 2015-05-12 15:57:01 -0500 |
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committer | pjotrp | 2015-05-12 15:57:01 -0500 |
commit | 640e2f1485a055e6b060c5b67863bc986d079f70 (patch) | |
tree | 716c6e0f2f34ae2656e6412aaab0ca50ae28e06d /wqflask/utility | |
parent | dcb0ef4e2b41d189d59d7d49c190ada02be45e0f (diff) | |
download | genenetwork2-640e2f1485a055e6b060c5b67863bc986d079f70.tar.gz |
Move path search into tools.py
Diffstat (limited to 'wqflask/utility')
-rw-r--r-- | wqflask/utility/tools.py | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py new file mode 100644 index 00000000..3c972557 --- /dev/null +++ b/wqflask/utility/tools.py @@ -0,0 +1,37 @@ +# Tools/paths finder resolves external paths from settings and/or environment +# variables +# +# Currently supported: +# +# PYLMM_PATH finds the root of the git repository of the pylmm_gn2 tool + +import os + +def get_setting(): + """ + Resolve a setting from the environment or the global settings in app.config + """ + pass + +def pylmm_command(default=None): + def get_valid_path(path): + if path and os.path.isfile(path+'/lmm.py'): + return path + else: + None + + # ---- Check whether environment exists + path = get_valid_path(os.environ['PYLMM_PATH']) + # ---- Check whether setting exists + if not path: + path = get_valid_path(app.config.get('PYLMM_PATH')) + # ---- Check whether default exists + if not path: + path = get_valid_path(default) + home = get_valid_path(os.environ['HOME']+'/pylmm_gn2') + if not path: + path = get_valid_path(home) + if not path: + raise Exception('PYLMM_PATH '+home+' unknown or faulty (add PYLMM_PATH to settings.py)') + pylmm_command = 'python '+path+'/lmm.py' + return path,pylmm_command |