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| author | zsloan | 2017-09-07 16:18:16 +0000 |
|---|---|---|
| committer | zsloan | 2017-09-07 16:18:16 +0000 |
| commit | a58550f207686ba4dad2c7793d5b0a769d663b66 (patch) | |
| tree | bb86d110ac893ac4ffaa8b088eee05c6179c7f9f /wqflask/utility | |
| parent | 97ee021da1250a63e508461b35188bc875e537e7 (diff) | |
| parent | 425f0e9d8977f8cf741f596315a56c91b750988a (diff) | |
| download | genenetwork2-a58550f207686ba4dad2c7793d5b0a769d663b66.tar.gz | |
Merge branch 'testing' of https://github.com/genenetwork/genenetwork2
Diffstat (limited to 'wqflask/utility')
| -rw-r--r-- | wqflask/utility/tools.py | 12 |
1 files changed, 8 insertions, 4 deletions
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py index 867bc5c8..c5685cdd 100644 --- a/wqflask/utility/tools.py +++ b/wqflask/utility/tools.py @@ -113,6 +113,9 @@ def pylmm_command(guess=None): def gemma_command(guess=None): return assert_bin(get_setting("GEMMA_COMMAND",guess)) +def gemma_wrapper_command(guess=None): + return assert_bin(get_setting("GEMMA_WRAPPER_COMMAND",guess)) + def plink_command(guess=None): return assert_bin(get_setting("PLINK_COMMAND",guess)) @@ -240,10 +243,11 @@ JS_GUIX_PATH = get_setting('JS_GUIX_PATH') JS_GN_PATH = get_setting('JS_GN_PATH') # assert_dir(JS_GN_PATH) -PYLMM_COMMAND = pylmm_command() -GEMMA_COMMAND = gemma_command() -PLINK_COMMAND = plink_command() -TEMPDIR = tempdir() # defaults to UNIX TMPDIR +PYLMM_COMMAND = pylmm_command() +GEMMA_COMMAND = gemma_command() +GEMMA_WRAPPER_COMMAND = gemma_wrapper_command() +PLINK_COMMAND = plink_command() +TEMPDIR = tempdir() # defaults to UNIX TMPDIR # ---- Handle specific JS modules JS_TWITTER_POST_FETCHER_PATH = get_setting("JS_TWITTER_POST_FETCHER_PATH",js_path("Twitter-Post-Fetcher")) |