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authorZachary Sloan2013-01-18 16:58:28 -0600
committerZachary Sloan2013-01-18 16:58:28 -0600
commit8aeff9b91d078a40a50d13f6393a1f1dabf62aa4 (patch)
tree88f11e9a92b94030aa814bde999e63f630899e0a /wqflask/utility
parentd39b691994a395c45fa242de6d64d12a5470af10 (diff)
downloadgenenetwork2-8aeff9b91d078a40a50d13f6393a1f1dabf62aa4.tar.gz
Renamed CorrelationPage.py to show_corr_results.py
Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places
Diffstat (limited to 'wqflask/utility')
-rw-r--r--wqflask/utility/helper_functions.py15
1 files changed, 15 insertions, 0 deletions
diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py
new file mode 100644
index 00000000..920d9ac6
--- /dev/null
+++ b/wqflask/utility/helper_functions.py
@@ -0,0 +1,15 @@
+from __future__ import absolute_import, print_function, division
+
+from base.trait import GeneralTrait
+from base import data_set
+
+def get_dataset_and_trait(self, start_vars):
+ #assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype"
+ self.dataset = data_set.create_dataset(start_vars['dataset'])
+ self.this_trait = GeneralTrait(dataset=self.dataset.name,
+ name=start_vars['trait_id'],
+ cellid=None)
+
+ #if read_genotype:
+ self.dataset.group.read_genotype_file()
+ self.genotype = self.dataset.group.genotype \ No newline at end of file