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| author | Zachary Sloan | 2013-02-19 15:09:38 -0600 |
|---|---|---|
| committer | Zachary Sloan | 2013-02-19 15:09:38 -0600 |
| commit | b4d6873f8d6327ae7cd64c80f31348728322f719 (patch) | |
| tree | 28d5ead2acb19597471656b9b7015af55bb6dc50 /wqflask/utility | |
| parent | 5648a1c878686d3698c376d4167922590ba8e350 (diff) | |
| download | genenetwork2-b4d6873f8d6327ae7cd64c80f31348728322f719.tar.gz | |
Made lines for manhattan plot proportional to chromosome lengths
Diffstat (limited to 'wqflask/utility')
| -rw-r--r-- | wqflask/utility/helper_functions.py | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py index 920d9ac6..d2567b63 100644 --- a/wqflask/utility/helper_functions.py +++ b/wqflask/utility/helper_functions.py @@ -2,14 +2,16 @@ from __future__ import absolute_import, print_function, division from base.trait import GeneralTrait from base import data_set +from base.species import TheSpecies -def get_dataset_and_trait(self, start_vars): +def get_species_dataset_trait(self, start_vars): #assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype" self.dataset = data_set.create_dataset(start_vars['dataset']) + self.species = TheSpecies(dataset=self.dataset) self.this_trait = GeneralTrait(dataset=self.dataset.name, name=start_vars['trait_id'], cellid=None) #if read_genotype: self.dataset.group.read_genotype_file() - self.genotype = self.dataset.group.genotype
\ No newline at end of file + self.genotype = self.dataset.group.genotype |