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| author | Zachary Sloan | 2013-07-19 17:34:52 -0500 |
|---|---|---|
| committer | Zachary Sloan | 2013-07-19 17:34:52 -0500 |
| commit | 82f493650909e2351035e26e9dc82b16498beb48 (patch) | |
| tree | bc66a571b7d805a75549526061b16c197cd6bc67 /wqflask/utility | |
| parent | 6aaefdaae3a9fb068278d9b94d8cdf25d4f8d852 (diff) | |
| download | genenetwork2-82f493650909e2351035e26e9dc82b16498beb48.tar.gz | |
Finished integrating code that reads sample list from geno files
withouot using reaper and caches results so it doesn't need
to read the file every single time someone loads a page
Diffstat (limited to 'wqflask/utility')
| -rw-r--r-- | wqflask/utility/helper_functions.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py index d76a32ce..44f5321e 100644 --- a/wqflask/utility/helper_functions.py +++ b/wqflask/utility/helper_functions.py @@ -8,11 +8,14 @@ from base.species import TheSpecies def get_species_dataset_trait(self, start_vars): #assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype" self.dataset = data_set.create_dataset(start_vars['dataset']) + print("After creating dataset") self.species = TheSpecies(dataset=self.dataset) + print("After creating species") self.this_trait = GeneralTrait(dataset=self.dataset, name=start_vars['trait_id'], cellid=None) + print("After creating trait") #if read_genotype: - self.dataset.group.read_genotype_file() + #self.dataset.group.read_genotype_file() #self.genotype = self.dataset.group.genotype |