autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133

7 files changed, 34 insertions, 34 deletions

diff --git a/wqflask/utility/Plot.py b/wqflask/utility/Plot.py
index f61e3b88..37a8a1a5 100644
--- a/wqflask/utility/Plot.py
+++ b/wqflask/utility/Plot.py
@@ -206,7 +206,7 @@ def plotBar(canvas, data, barColor=BLUE, axesColor=BLACK, labelColor=BLACK, XLab
         im_drawer.text(
             text=strY,
             xy=(xLeftOffset - im_drawer.textsize(strY,
-                font=scaleFont)[0] - 6, yc + 5),
+                                                 font=scaleFont)[0] - 6, yc + 5),
             font=scaleFont)
         y += (yTop - yLow) / stepY
 
diff --git a/wqflask/utility/__init__.py b/wqflask/utility/__init__.py
index 6c8cd546..25273fa0 100644
--- a/wqflask/utility/__init__.py
+++ b/wqflask/utility/__init__.py
@@ -32,4 +32,4 @@ class Struct:
 
     def __repr__(self):
         return '{%s}' % str(', '.join('%s : %s' % (k, repr(v)) for
-            (k, v) in list(self.__dict__.items())))
+                                      (k, v) in list(self.__dict__.items())))
diff --git a/wqflask/utility/elasticsearch_tools.py b/wqflask/utility/elasticsearch_tools.py
index 55907dd5..e56c22eb 100644
--- a/wqflask/utility/elasticsearch_tools.py
+++ b/wqflask/utility/elasticsearch_tools.py
@@ -50,7 +50,7 @@ from utility.tools import ELASTICSEARCH_HOST, ELASTICSEARCH_PORT
 
 def test_elasticsearch_connection():
     es = Elasticsearch(['http://' + ELASTICSEARCH_HOST + \
-                       ":" + str(ELASTICSEARCH_PORT) + '/'], verify_certs=True)
+                        ":" + str(ELASTICSEARCH_PORT) + '/'], verify_certs=True)
     if not es.ping():
         logger.warning("Elasticsearch is DOWN")
 
diff --git a/wqflask/utility/genofile_parser.py b/wqflask/utility/genofile_parser.py
index eb545478..86d9823e 100644
--- a/wqflask/utility/genofile_parser.py
+++ b/wqflask/utility/genofile_parser.py
@@ -37,10 +37,10 @@ class ConvertGenoFile:
         self.input_fh = open(input_file)
         print("!!!!!!!!!!!!!!!!PARSER!!!!!!!!!!!!!!!!!!")
         self.haplotype_notation = {
-          '@mat': "1",
-          '@pat': "2",
-          '@het': "-999",
-          '@unk': "-999"
+            '@mat': "1",
+            '@pat': "2",
+            '@het': "-999",
+            '@unk': "-999"
         }
         self.configurations = {}
 
@@ -93,7 +93,7 @@ class ConvertGenoFile:
             for item_count, genotype in enumerate(genotypes):
                 if genotype.upper().strip() in self.configurations:
                     this_marker.genotypes.append(
-                      self.configurations[genotype.upper().strip()])
+                        self.configurations[genotype.upper().strip()])
                 else:
                     print("WARNING:", genotype.upper())
                     this_marker.genotypes.append("NA")
diff --git a/wqflask/utility/startup_config.py b/wqflask/utility/startup_config.py
index 05f8a2b0..6ef759e0 100644
--- a/wqflask/utility/startup_config.py
+++ b/wqflask/utility/startup_config.py
@@ -39,4 +39,4 @@ def app_config():
     # es.test_elasticsearch_connection()
 
     print(("GN2 is running. Visit %s[http://localhost:%s/%s](%s)" %
-          (BLUE, str(port), ENDC, get_setting("WEBSERVER_URL"))))
+           (BLUE, str(port), ENDC, get_setting("WEBSERVER_URL"))))
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index 4f09176a..e28abb48 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -295,8 +295,8 @@ ORCID_CLIENT_SECRET = get_setting('ORCID_CLIENT_SECRET')
 ORCID_AUTH_URL = None
 if ORCID_CLIENT_ID != 'UNKNOWN' and ORCID_CLIENT_SECRET:
     ORCID_AUTH_URL = "https://orcid.org/oauth/authorize?response_type=code&scope=/authenticate&show_login=true&client_id=" + \
-                      ORCID_CLIENT_ID + "&client_secret=" + ORCID_CLIENT_SECRET + \
-                          "&redirect_uri=" + GN2_BRANCH_URL + "n/login/orcid_oauth2"
+        ORCID_CLIENT_ID + "&client_secret=" + ORCID_CLIENT_SECRET + \
+        "&redirect_uri=" + GN2_BRANCH_URL + "n/login/orcid_oauth2"
     ORCID_TOKEN_URL = get_setting('ORCID_TOKEN_URL')
 
 ELASTICSEARCH_HOST = get_setting('ELASTICSEARCH_HOST')
diff --git a/wqflask/utility/webqtlUtil.py b/wqflask/utility/webqtlUtil.py
index f355a865..0cb71567 100644
--- a/wqflask/utility/webqtlUtil.py
+++ b/wqflask/utility/webqtlUtil.py
@@ -35,29 +35,29 @@ from base import webqtlConfig
 # NL, 07/27/2010. moved from webqtlForm.py
 # Dict of Parents and F1 information, In the order of [F1, Mat, Pat]
 ParInfo = {
-'BXH': ['BHF1', 'HBF1', 'C57BL/6J', 'C3H/HeJ'],
-'AKXD': ['AKF1', 'KAF1', 'AKR/J', 'DBA/2J'],
-'BXD': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
-'C57BL-6JxC57BL-6NJF2': ['', '', 'C57BL/6J', 'C57BL/6NJ'],
-'BXD300': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
-'B6BTBRF2': ['B6BTBRF1', 'BTBRB6F1', 'C57BL/6J', 'BTBRT<+>tf/J'],
-'BHHBF2': ['B6HF2', 'HB6F2', 'C57BL/6J', 'C3H/HeJ'],
-'BHF2': ['B6HF2', 'HB6F2', 'C57BL/6J', 'C3H/HeJ'],
-'B6D2F2': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
-'BDF2-1999': ['B6D2F2', 'D2B6F2', 'C57BL/6J', 'DBA/2J'],
-'BDF2-2005': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
-'CTB6F2': ['CTB6F2', 'B6CTF2', 'C57BL/6J', 'Castaneous'],
-'CXB': ['CBF1', 'BCF1', 'C57BL/6ByJ', 'BALB/cByJ'],
-'AXBXA': ['ABF1', 'BAF1', 'C57BL/6J', 'A/J'],
-'AXB': ['ABF1', 'BAF1', 'C57BL/6J', 'A/J'],
-'BXA': ['BAF1', 'ABF1', 'C57BL/6J', 'A/J'],
-'LXS': ['LSF1', 'SLF1', 'ISS', 'ILS'],
-'HXBBXH': ['SHR_BNF1', 'BN_SHRF1', 'BN-Lx/Cub', 'SHR/OlaIpcv'],
-'BayXSha': ['BayXShaF1', 'ShaXBayF1', 'Bay-0', 'Shahdara'],
-'ColXBur': ['ColXBurF1', 'BurXColF1', 'Col-0', 'Bur-0'],
-'ColXCvi': ['ColXCviF1', 'CviXColF1', 'Col-0', 'Cvi'],
-'SXM': ['SMF1', 'MSF1', 'Steptoe', 'Morex'],
-'HRDP': ['SHR_BNF1', 'BN_SHRF1', 'BN-Lx/Cub', 'SHR/OlaIpcv']
+    'BXH': ['BHF1', 'HBF1', 'C57BL/6J', 'C3H/HeJ'],
+    'AKXD': ['AKF1', 'KAF1', 'AKR/J', 'DBA/2J'],
+    'BXD': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
+    'C57BL-6JxC57BL-6NJF2': ['', '', 'C57BL/6J', 'C57BL/6NJ'],
+    'BXD300': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
+    'B6BTBRF2': ['B6BTBRF1', 'BTBRB6F1', 'C57BL/6J', 'BTBRT<+>tf/J'],
+    'BHHBF2': ['B6HF2', 'HB6F2', 'C57BL/6J', 'C3H/HeJ'],
+    'BHF2': ['B6HF2', 'HB6F2', 'C57BL/6J', 'C3H/HeJ'],
+    'B6D2F2': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
+    'BDF2-1999': ['B6D2F2', 'D2B6F2', 'C57BL/6J', 'DBA/2J'],
+    'BDF2-2005': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
+    'CTB6F2': ['CTB6F2', 'B6CTF2', 'C57BL/6J', 'Castaneous'],
+    'CXB': ['CBF1', 'BCF1', 'C57BL/6ByJ', 'BALB/cByJ'],
+    'AXBXA': ['ABF1', 'BAF1', 'C57BL/6J', 'A/J'],
+    'AXB': ['ABF1', 'BAF1', 'C57BL/6J', 'A/J'],
+    'BXA': ['BAF1', 'ABF1', 'C57BL/6J', 'A/J'],
+    'LXS': ['LSF1', 'SLF1', 'ISS', 'ILS'],
+    'HXBBXH': ['SHR_BNF1', 'BN_SHRF1', 'BN-Lx/Cub', 'SHR/OlaIpcv'],
+    'BayXSha': ['BayXShaF1', 'ShaXBayF1', 'Bay-0', 'Shahdara'],
+    'ColXBur': ['ColXBurF1', 'BurXColF1', 'Col-0', 'Bur-0'],
+    'ColXCvi': ['ColXCviF1', 'CviXColF1', 'Col-0', 'Cvi'],
+    'SXM': ['SMF1', 'MSF1', 'Steptoe', 'Morex'],
+    'HRDP': ['SHR_BNF1', 'BN_SHRF1', 'BN-Lx/Cub', 'SHR/OlaIpcv']
 }
 
 #########################################