aboutsummaryrefslogtreecommitdiff
path: root/wqflask/utility
diff options
context:
space:
mode:
authorZachary Sloan2013-08-14 17:25:52 -0500
committerZachary Sloan2013-08-14 17:25:52 -0500
commit26b1883a8fe4053b59833178f44e047157f2fc9c (patch)
treed2359e5952f6062d75ba1f43f1804a7b6df284c9 /wqflask/utility
parenteea1c38a9851f31011787b27c14365211a06ea51 (diff)
parent6379959af53b2ec595b85ccdc099c6f14adf0381 (diff)
downloadgenenetwork2-26b1883a8fe4053b59833178f44e047157f2fc9c.tar.gz
Merge branch 'master' of https://github.com/zsloan/genenetwork
Diffstat (limited to 'wqflask/utility')
-rw-r--r--wqflask/utility/helper_functions.py5
1 files changed, 4 insertions, 1 deletions
diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py
index d76a32ce..44f5321e 100644
--- a/wqflask/utility/helper_functions.py
+++ b/wqflask/utility/helper_functions.py
@@ -8,11 +8,14 @@ from base.species import TheSpecies
def get_species_dataset_trait(self, start_vars):
#assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype"
self.dataset = data_set.create_dataset(start_vars['dataset'])
+ print("After creating dataset")
self.species = TheSpecies(dataset=self.dataset)
+ print("After creating species")
self.this_trait = GeneralTrait(dataset=self.dataset,
name=start_vars['trait_id'],
cellid=None)
+ print("After creating trait")
#if read_genotype:
- self.dataset.group.read_genotype_file()
+ #self.dataset.group.read_genotype_file()
#self.genotype = self.dataset.group.genotype