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authorZachary Sloan2013-02-19 15:09:38 -0600
committerZachary Sloan2013-02-19 15:09:38 -0600
commitb4d6873f8d6327ae7cd64c80f31348728322f719 (patch)
tree28d5ead2acb19597471656b9b7015af55bb6dc50 /wqflask/utility
parent5648a1c878686d3698c376d4167922590ba8e350 (diff)
downloadgenenetwork2-b4d6873f8d6327ae7cd64c80f31348728322f719.tar.gz
Made lines for manhattan plot proportional to chromosome lengths
Diffstat (limited to 'wqflask/utility')
-rw-r--r--wqflask/utility/helper_functions.py6
1 files changed, 4 insertions, 2 deletions
diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py
index 920d9ac6..d2567b63 100644
--- a/wqflask/utility/helper_functions.py
+++ b/wqflask/utility/helper_functions.py
@@ -2,14 +2,16 @@ from __future__ import absolute_import, print_function, division
from base.trait import GeneralTrait
from base import data_set
+from base.species import TheSpecies
-def get_dataset_and_trait(self, start_vars):
+def get_species_dataset_trait(self, start_vars):
#assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype"
self.dataset = data_set.create_dataset(start_vars['dataset'])
+ self.species = TheSpecies(dataset=self.dataset)
self.this_trait = GeneralTrait(dataset=self.dataset.name,
name=start_vars['trait_id'],
cellid=None)
#if read_genotype:
self.dataset.group.read_genotype_file()
- self.genotype = self.dataset.group.genotype \ No newline at end of file
+ self.genotype = self.dataset.group.genotype