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authorzsloan2017-05-22 15:48:34 +0000
committerzsloan2017-05-22 15:48:34 +0000
commitd3d8da25bd837068498c78d5f8541952ae950e56 (patch)
tree42b585c2e4020a621ff4c7a64797174ae5683565 /wqflask/utility/tools.py
parente6afa39ac0bf769bed181ad9e16fc4fc8e16bb22 (diff)
parent9d4cb56608ca5de3495ede9149443e772a25d706 (diff)
downloadgenenetwork2-d3d8da25bd837068498c78d5f8541952ae950e56.tar.gz
Merge branch 'master' of https://github.com/genenetwork/genenetwork2
Diffstat (limited to 'wqflask/utility/tools.py')
-rw-r--r--wqflask/utility/tools.py11
1 files changed, 6 insertions, 5 deletions
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index c28c617a..d46a84ba 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -205,21 +205,24 @@ SQL_URI = get_setting('SQL_URI')
LOG_LEVEL = get_setting('LOG_LEVEL')
LOG_LEVEL_DEBUG = get_setting_int('LOG_LEVEL_DEBUG')
LOG_SQL = get_setting_bool('LOG_SQL')
-LOG_SQLALCHEMY = get_setting_bool('LOG_SQLALCHEMY')
+LOG_SQL_ALCHEMY = get_setting_bool('LOG_SQL_ALCHEMY')
LOG_BENCH = get_setting_bool('LOG_BENCH')
LOG_FORMAT = "%(message)s" # not yet in use
USE_REDIS = get_setting_bool('USE_REDIS')
USE_GN_SERVER = get_setting_bool('USE_GN_SERVER')
GENENETWORK_FILES = get_setting('GENENETWORK_FILES')
-TEMP_TRAITS = get_setting('TEMP_TRAITS')
+GUIX_JS_PATH = get_setting('GUIX_JS_PATH')
+assert_dir(GUIX_JS_PATH)
PYLMM_COMMAND = pylmm_command()
GEMMA_COMMAND = gemma_command()
-GEMMA_RESULTS_PATH = get_setting('GEMMA_RESULTS_PATH')
PLINK_COMMAND = plink_command()
TEMPDIR = tempdir() # defaults to UNIX TMPDIR
+TWITTER_POST_FETCHER_JS_PATH = GUIX_JS_PATH + "/Twitter-Post-Fetcher"
+assert_dir(TWITTER_POST_FETCHER_JS_PATH)
+
from six import string_types
if os.environ.get('WQFLASK_OVERRIDES'):
@@ -234,5 +237,3 @@ if os.environ.get('WQFLASK_OVERRIDES'):
else:
OVERRIDES[k] = cmd
logger.debug(OVERRIDES)
-
-assert_dir(get_setting("TWITTER_POST_FETCHER_JS_PATH"))