Merge branch 'testing' of github.com:genenetwork/genenetwork2 into acenteno

1 files changed, 363 insertions, 329 deletions

diff --git a/wqflask/utility/svg.py b/wqflask/utility/svg.py
index db13b9d1..b92cc2d1 100644
--- a/wqflask/utility/svg.py
+++ b/wqflask/utility/svg.py
@@ -25,54 +25,56 @@
 # Last updated by GeneNetwork Core Team 2010/10/20
 
 #!/usr/bin/env python
-##Copyright (c) 2002, Fedor Baart & Hans de Wit (Stichting Farmaceutische Kengetallen)
-##All rights reserved.
+# Copyright (c) 2002, Fedor Baart & Hans de Wit (Stichting Farmaceutische Kengetallen)
+# All rights reserved.
 ##
-##Redistribution and use in source and binary forms, with or without modification,
-##are permitted provided that the following conditions are met:
+# Redistribution and use in source and binary forms, with or without modification,
+# are permitted provided that the following conditions are met:
 ##
-##Redistributions of source code must retain the above copyright notice, this
-##list of conditions and the following disclaimer.
+# Redistributions of source code must retain the above copyright notice, this
+# list of conditions and the following disclaimer.
 ##
-##Redistributions in binary form must reproduce the above copyright notice,
-##this list of conditions and the following disclaimer in the documentation and/or
-##other materials provided with the distribution.
+# Redistributions in binary form must reproduce the above copyright notice,
+# this list of conditions and the following disclaimer in the documentation and/or
+# other materials provided with the distribution.
 ##
-##Neither the name of the Stichting Farmaceutische Kengetallen nor the names of
-##its contributors may be used to endorse or promote products derived from this
-##software without specific prior written permission.
+# Neither the name of the Stichting Farmaceutische Kengetallen nor the names of
+# its contributors may be used to endorse or promote products derived from this
+# software without specific prior written permission.
 ##
-##THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-##AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-##IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-##DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE
-##FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-##DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-##SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-##CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-##OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-##OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE
+# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+# Thanks to Gerald Rosennfellner for his help and useful comments.
 
-##Thanks to Gerald Rosennfellner for his help and useful comments.
-
-__doc__="""Use SVGdraw to generate your SVGdrawings.
+import sys
+import exceptions
+__doc__ = """Use SVGdraw to generate your SVGdrawings.
 
 SVGdraw uses an object model drawing and a method toXML to create SVG graphics
 by using easy to use classes and methods usualy you start by creating a drawing eg
 
     d=drawing()
-    #then you create a SVG root element
+    # then you create a SVG root element
     s=svg()
-    #then you add some elements eg a circle and add it to the svg root element
+    # then you add some elements eg a circle and add it to the svg root element
     c=circle()
-    #you can supply attributes by using named arguments.
+    # you can supply attributes by using named arguments.
     c=circle(fill='red',stroke='blue')
-    #or by updating the attributes attribute:
+    # or by updating the attributes attribute:
     c.attributes['stroke-width']=1
     s.addElement(c)
-    #then you add the svg root element to the drawing
+    # then you add the svg root element to the drawing
     d.setSVG(s)
-    #and finaly you xmlify the drawing
+    # and finaly you xmlify the drawing
     d.toXml()
 
 
@@ -82,7 +84,7 @@ This module was created using the SVG specification of www.w3c.org and the
 O'Reilly (www.oreilly.com) python books as information sources. A svg viewer
 is available from www.adobe.com"""
 
-__version__="1.0"
+__version__ = "1.0"
 
 # there are two possibilities to generate svg:
 # via a dom implementation and directly using <element>text</element> strings
@@ -93,33 +95,34 @@ __version__="1.0"
 # Note that PyXML is required for using the dom implementation.
 # It is also possible to use the standard minidom. But I didn't try that one.
 # Anyway the text based approach is about 60 times faster than using the full dom implementation.
-use_dom_implementation=0
+use_dom_implementation = 0
 
 
-import exceptions
-if use_dom_implementation<>0:
+if use_dom_implementation != 0:
     try:
         from xml.dom import implementation
         from xml.dom.ext import PrettyPrint
     except:
-        raise exceptions.ImportError, "PyXML is required for using the dom implementation"
-#The implementation is used for the creating the XML document.
-#The prettyprint module is used for converting the xml document object to a xml file
+        raise exceptions.ImportError(
+            "PyXML is required for using the dom implementation")
+# The implementation is used for the creating the XML document.
+# The prettyprint module is used for converting the xml document object to a xml file
+
+assert sys.version_info[0] >= 2
+if sys.version_info[1] < 2:
+    True = 1
+    False = 0
+    file = open
+
+sys.setrecursionlimit = 50
+# The recursion limit is set conservative so mistakes like s=svg() s.addElement(s)
+# won't eat up too much processor time.
+
+# the following code is pasted form xml.sax.saxutils
+# it makes it possible to run the code without the xml sax package installed
+# To make it possible to have <rubbish> in your text elements, it is necessary to escape the texts
+
 
-import sys
-assert sys.version_info[0]>=2
-if sys.version_info[1]<2:
-    True=1
-    False=0
-    file=open
-
-sys.setrecursionlimit=50
-#The recursion limit is set conservative so mistakes like s=svg() s.addElement(s)
-#won't eat up too much processor time.
-
-#the following code is pasted form xml.sax.saxutils
-#it makes it possible to run the code without the xml sax package installed
-#To make it possible to have <rubbish> in your text elements, it is necessary to escape the texts
 def _escape(data, entities={}):
     """Escape &, <, and > in a string of data.
 
@@ -127,13 +130,14 @@ def _escape(data, entities={}):
     the optional entities parameter.  The keys and values must all be
     strings; each key will be replaced with its corresponding value.
     """
-    #data = data.replace("&", "&amp;")
+    # data = data.replace("&", "&amp;")
     data = data.replace("<", "&lt;")
     data = data.replace(">", "&gt;")
-    for chars, entity in entities.items():
+    for chars, entity in list(entities.items()):
         data = data.replace(chars, entity)
     return data
 
+
 def _quoteattr(data, entities={}):
     """Escape and quote an attribute value.
 
@@ -156,96 +160,121 @@ def _quoteattr(data, entities={}):
     return data
 
 
-
 def _xypointlist(a):
     """formats a list of xy pairs"""
-    s=''
-    for e in a: #this could be done more elegant
-        s+=str(e)[1:-1] +'  '
+    s = ''
+    for e in a:  # this could be done more elegant
+        s += str(e)[1:-1] + '  '
     return s
 
+
 def _viewboxlist(a):
     """formats a tuple"""
-    s=''
+    s = ''
     for e in a:
-        s+=str(e)+' '
+        s += str(e)+' '
     return s
 
+
 def _pointlist(a):
     """formats a list of numbers"""
     return str(a)[1:-1]
 
+
 class pathdata:
     """class used to create a pathdata object which can be used for a path.
     although most methods are pretty straightforward it might be useful to look at the SVG specification."""
-    #I didn't test the methods below.
-    def __init__(self,x=None,y=None):
-        self.path=[]
+    # I didn't test the methods below.
+
+    def __init__(self, x=None, y=None):
+        self.path = []
         if x is not None and y is not None:
             self.path.append('M '+str(x)+' '+str(y))
+
     def closepath(self):
         """ends the path"""
         self.path.append('z')
-    def move(self,x,y):
+
+    def move(self, x, y):
         """move to absolute"""
         self.path.append('M '+str(x)+' '+str(y))
-    def relmove(self,x,y):
+
+    def relmove(self, x, y):
         """move to relative"""
         self.path.append('m '+str(x)+' '+str(y))
-    def line(self,x,y):
+
+    def line(self, x, y):
         """line to absolute"""
         self.path.append('L '+str(x)+' '+str(y))
-    def relline(self,x,y):
+
+    def relline(self, x, y):
         """line to relative"""
         self.path.append('l '+str(x)+' '+str(y))
-    def hline(self,x):
+
+    def hline(self, x):
         """horizontal line to absolute"""
         self.path.append('H'+str(x))
-    def relhline(self,x):
+
+    def relhline(self, x):
         """horizontal line to relative"""
         self.path.append('h'+str(x))
-    def vline(self,y):
+
+    def vline(self, y):
         """verical line to absolute"""
         self.path.append('V'+str(y))
-    def relvline(self,y):
+
+    def relvline(self, y):
         """vertical line to relative"""
         self.path.append('v'+str(y))
-    def bezier(self,x1,y1,x2,y2,x,y):
+
+    def bezier(self, x1, y1, x2, y2, x, y):
         """bezier with xy1 and xy2 to xy absolut"""
-        self.path.append('C'+str(x1)+','+str(y1)+' '+str(x2)+','+str(y2)+' '+str(x)+','+str(y))
-    def relbezier(self,x1,y1,x2,y2,x,y):
+        self.path.append('C'+str(x1)+','+str(y1)+' '+str(x2) +
+                         ','+str(y2)+' '+str(x)+','+str(y))
+
+    def relbezier(self, x1, y1, x2, y2, x, y):
         """bezier with xy1 and xy2 to xy relative"""
-        self.path.append('c'+str(x1)+','+str(y1)+' '+str(x2)+','+str(y2)+' '+str(x)+','+str(y))
-    def smbezier(self,x2,y2,x,y):
+        self.path.append('c'+str(x1)+','+str(y1)+' '+str(x2) +
+                         ','+str(y2)+' '+str(x)+','+str(y))
+
+    def smbezier(self, x2, y2, x, y):
         """smooth bezier with xy2 to xy absolut"""
         self.path.append('S'+str(x2)+','+str(y2)+' '+str(x)+','+str(y))
-    def relsmbezier(self,x2,y2,x,y):
+
+    def relsmbezier(self, x2, y2, x, y):
         """smooth bezier with xy2 to xy relative"""
         self.path.append('s'+str(x2)+','+str(y2)+' '+str(x)+','+str(y))
-    def qbezier(self,x1,y1,x,y):
+
+    def qbezier(self, x1, y1, x, y):
         """quadratic bezier with xy1 to xy absolut"""
         self.path.append('Q'+str(x1)+','+str(y1)+' '+str(x)+','+str(y))
-    def relqbezier(self,x1,y1,x,y):
+
+    def relqbezier(self, x1, y1, x, y):
         """quadratic bezier with xy1 to xy relative"""
         self.path.append('q'+str(x1)+','+str(y1)+' '+str(x)+','+str(y))
-    def smqbezier(self,x,y):
+
+    def smqbezier(self, x, y):
         """smooth quadratic bezier to xy absolut"""
         self.path.append('T'+str(x)+','+str(y))
-    def relsmqbezier(self,x,y):
+
+    def relsmqbezier(self, x, y):
         """smooth quadratic bezier to xy relative"""
         self.path.append('t'+str(x)+','+str(y))
-    def ellarc(self,rx,ry,xrot,laf,sf,x,y):
+
+    def ellarc(self, rx, ry, xrot, laf, sf, x, y):
         """elliptival arc with rx and ry rotating with xrot using large-arc-flag and sweep-flag  to xy absolut"""
-        self.path.append('A'+str(rx)+','+str(ry)+' '+str(xrot)+' '+str(laf)+' '+str(sf)+' '+str(x)+' '+str(y))
-    def relellarc(self,rx,ry,xrot,laf,sf,x,y):
+        self.path.append('A'+str(rx)+','+str(ry)+' '+str(xrot) +
+                         ' '+str(laf)+' '+str(sf)+' '+str(x)+' '+str(y))
+
+    def relellarc(self, rx, ry, xrot, laf, sf, x, y):
         """elliptival arc with rx and ry rotating with xrot using large-arc-flag and sweep-flag  to xy relative"""
-        self.path.append('a'+str(rx)+','+str(ry)+' '+str(xrot)+' '+str(laf)+' '+str(sf)+' '+str(x)+' '+str(y))
+        self.path.append('a'+str(rx)+','+str(ry)+' '+str(xrot) +
+                         ' '+str(laf)+' '+str(sf)+' '+str(x)+' '+str(y))
+
     def __repr__(self):
         return ' '.join(self.path)
 
 
-
-
 class SVGelement:
     """SVGelement(type,attributes,elements,text,namespace,**args)
     Creates a arbitrary svg element and is intended to be subclassed not used on its own.
@@ -256,52 +285,56 @@ class SVGelement:
     namespace. Note the elements==None, if elements = None:self.elements=[] construction.
     This is done because if you default to elements=[] every object has a reference
     to the same empty list."""
-    def __init__(self,type='',attributes=None,elements=None,text='',namespace='',cdata=None, **args):
-        self.type=type
-        if attributes==None:
-            self.attributes={}
+
+    def __init__(self, type='', attributes=None, elements=None, text='', namespace='', cdata=None, **args):
+        self.type = type
+        if attributes == None:
+            self.attributes = {}
         else:
-            self.attributes=attributes
-        if elements==None:
-            self.elements=[]
+            self.attributes = attributes
+        if elements == None:
+            self.elements = []
         else:
-            self.elements=elements
-        self.text=text
-        self.namespace=namespace
-        self.cdata=cdata
-        for arg in args.keys():
+            self.elements = elements
+        self.text = text
+        self.namespace = namespace
+        self.cdata = cdata
+        for arg in list(args.keys()):
             arg2 = arg.replace("__", ":")
             arg2 = arg2.replace("_", "-")
-            self.attributes[arg2]=args[arg]
-    def addElement(self,SVGelement):
+            self.attributes[arg2] = args[arg]
+
+    def addElement(self, SVGelement):
         """adds an element to a SVGelement
 
         SVGelement.addElement(SVGelement)
         """
         self.elements.append(SVGelement)
 
-    def toXml(self,level,f):
+    def toXml(self, level, f):
         f.write('\t'*level)
         f.write('<'+self.type)
-        for attkey in self.attributes.keys():
-            f.write(' '+_escape(str(attkey))+'='+_quoteattr(str(self.attributes[attkey])))
+        for attkey in list(self.attributes.keys()):
+            f.write(' '+_escape(str(attkey))+'=' +
+                    _quoteattr(str(self.attributes[attkey])))
         if self.namespace:
-            f.write(' xmlns="'+ _escape(str(self.namespace))+'" xmlns:xlink="http://www.w3.org/1999/xlink"')
+            f.write(' xmlns="' + _escape(str(self.namespace)) +
+                    '" xmlns:xlink="http://www.w3.org/1999/xlink"')
         if self.elements or self.text or self.cdata:
             f.write('>')
         if self.elements:
             f.write('\n')
         for element in self.elements:
-            element.toXml(level+1,f)
+            element.toXml(level+1, f)
         if self.cdata:
             f.write('\n'+'\t'*(level+1)+'<![CDATA[')
             for line in self.cdata.splitlines():
                 f.write('\n'+'\t'*(level+2)+line)
             f.write('\n'+'\t'*(level+1)+']]>\n')
         if self.text:
-            if type(self.text)==type(''): #If the text is only text
+            if isinstance(self.text, type('')):  # If the text is only text
                 f.write(_escape(str(self.text)))
-            else:                         #If the text is a spannedtext class
+            else:  # If the text is a spannedtext class
                 f.write(str(self.text))
         if self.elements:
             f.write('\t'*level+'</'+self.type+'>\n')
@@ -312,6 +345,7 @@ class SVGelement:
         else:
             f.write('/>\n')
 
+
 class tspan(SVGelement):
     """ts=tspan(text='',**args)
 
@@ -323,19 +357,22 @@ class tspan(SVGelement):
     st.addtspan(ts)
     t=text(3,5,st)
     """
-    def __init__(self,text=None,**args):
-        SVGelement.__init__(self,'tspan',**args)
-        if self.text<>None:
-            self.text=text
+
+    def __init__(self, text=None, **args):
+        SVGelement.__init__(self, 'tspan', **args)
+        if self.text != None:
+            self.text = text
+
     def __repr__(self):
-        s="<tspan"
-        for key,value in self.attributes.items():
-            s+= ' %s="%s"' % (key,value)
-        s+='>'
-        s+=self.text
-        s+='</tspan>'
+        s = "<tspan"
+        for key, value in list(self.attributes.items()):
+            s += ' %s="%s"' % (key, value)
+        s += '>'
+        s += self.text
+        s += '</tspan>'
         return s
 
+
 class tref(SVGelement):
     """tr=tref(link='',**args)
 
@@ -346,16 +383,19 @@ class tref(SVGelement):
     st.addtref(tr)
     t=text(3,5,st)
     """
-    def __init__(self,link,**args):
-        SVGelement.__init__(self,'tref',{'xlink:href':link},**args)
+
+    def __init__(self, link, **args):
+        SVGelement.__init__(self, 'tref', {'xlink:href': link}, **args)
+
     def __repr__(self):
-        s="<tref"
+        s = "<tref"
 
-        for key,value in self.attributes.items():
-            s+= ' %s="%s"' % (key,value)
-        s+='/>'
+        for key, value in list(self.attributes.items()):
+            s += ' %s="%s"' % (key, value)
+        s += '/>'
         return s
 
+
 class spannedtext:
     """st=spannedtext(textlist=[])
 
@@ -374,46 +414,49 @@ class spannedtext:
     st.addtext('This text is not bold')
     t=text(3,5,st)
     """
-    def __init__(self,textlist=None):
-        if textlist==None:
-            self.textlist=[]
+
+    def __init__(self, textlist=None):
+        if textlist == None:
+            self.textlist = []
         else:
-            self.textlist=textlist
-    def addtext(self,text=''):
+            self.textlist = textlist
+
+    def addtext(self, text=''):
         self.textlist.append(text)
-    def addtspan(self,tspan):
+
+    def addtspan(self, tspan):
         self.textlist.append(tspan)
-    def addtref(self,tref):
+
+    def addtref(self, tref):
         self.textlist.append(tref)
+
     def __repr__(self):
-        s=""
+        s = ""
         for element in self.textlist:
-            s+=str(element)
+            s += str(element)
         return s
 
+
 class rect(SVGelement):
     """r=rect(width,height,x,y,fill,stroke,stroke_width,**args)
 
     a rectangle is defined by a width and height and a xy pair
     """
-    def __init__(self,x=None,y=None,width=None,height=None,fill=None,stroke=None,stroke_width=None,**args):
-        if width==None or height==None:
-            if width<>None:
-                raise ValueError, 'height is required'
-            if height<>None:
-                raise ValueError, 'width is required'
-            else:
-                raise ValueError, 'both height and width are required'
-        SVGelement.__init__(self,'rect',{'width':width,'height':height},**args)
-        if x<>None:
+
+    def __init__(self, x=None, y=None, width=None, height=None, fill=None, stroke=None, stroke_width=None, **args):
+        if width == None or height == None:
+            raise ValueError('both height and width are required')
+
+        SVGelement.__init__(self, 'rect', {'width':width,'height':height}, **args)
+        if x!=None:
             self.attributes['x']=x
-        if y<>None:
+        if y!=None:
             self.attributes['y']=y
-        if fill<>None:
+        if fill!=None:
             self.attributes['fill']=fill
-        if stroke<>None:
+        if stroke!=None:
             self.attributes['stroke']=stroke
-        if stroke_width<>None:
+        if stroke_width!=None:
             self.attributes['stroke-width']=stroke_width
 
 class ellipse(SVGelement):
@@ -423,22 +466,18 @@ class ellipse(SVGelement):
     """
     def __init__(self,cx=None,cy=None,rx=None,ry=None,fill=None,stroke=None,stroke_width=None,**args):
         if rx==None or ry== None:
-            if rx<>None:
-                raise ValueError, 'rx is required'
-            if ry<>None:
-                raise ValueError, 'ry is required'
-            else:
-                raise ValueError, 'both rx and ry are required'
-        SVGelement.__init__(self,'ellipse',{'rx':rx,'ry':ry},**args)
-        if cx<>None:
+            raise ValueError('both rx and ry are required')
+
+        SVGelement.__init__(self, 'ellipse', {'rx':rx,'ry':ry}, **args)
+        if cx!=None:
             self.attributes['cx']=cx
-        if cy<>None:
+        if cy!=None:
             self.attributes['cy']=cy
-        if fill<>None:
+        if fill!=None:
             self.attributes['fill']=fill
-        if stroke<>None:
+        if stroke!=None:
             self.attributes['stroke']=stroke
-        if stroke_width<>None:
+        if stroke_width!=None:
             self.attributes['stroke-width']=stroke_width
 
 
@@ -449,17 +488,17 @@ class circle(SVGelement):
     """
     def __init__(self,cx=None,cy=None,r=None,fill=None,stroke=None,stroke_width=None,**args):
         if r==None:
-            raise ValueError, 'r is required'
-        SVGelement.__init__(self,'circle',{'r':r},**args)
-        if cx<>None:
+            raise ValueError('r is required')
+        SVGelement.__init__(self, 'circle', {'r':r}, **args)
+        if cx!=None:
             self.attributes['cx']=cx
-        if cy<>None:
+        if cy!=None:
             self.attributes['cy']=cy
-        if fill<>None:
+        if fill!=None:
             self.attributes['fill']=fill
-        if stroke<>None:
+        if stroke!=None:
             self.attributes['stroke']=stroke
-        if stroke_width<>None:
+        if stroke_width!=None:
             self.attributes['stroke-width']=stroke_width
 
 class point(circle):
@@ -469,7 +508,7 @@ class point(circle):
     very small rectangle if you use many points because a circle is difficult to render.
     """
     def __init__(self,x,y,fill='black',**args):
-        circle.__init__(self,x,y,1,fill,**args)
+        circle.__init__(self, x, y, 1, fill, **args)
 
 class line(SVGelement):
     """l=line(x1,y1,x2,y2,stroke,stroke_width,**args)
@@ -477,18 +516,18 @@ class line(SVGelement):
     A line is defined by a begin x,y pair and an end x,y pair
     """
     def __init__(self,x1=None,y1=None,x2=None,y2=None,stroke=None,stroke_width=None,**args):
-        SVGelement.__init__(self,'line',**args)
-        if x1<>None:
+        SVGelement.__init__(self, 'line', **args)
+        if x1!=None:
             self.attributes['x1']=x1
-        if y1<>None:
+        if y1!=None:
             self.attributes['y1']=y1
-        if x2<>None:
+        if x2!=None:
             self.attributes['x2']=x2
-        if y2<>None:
+        if y2!=None:
             self.attributes['y2']=y2
-        if stroke_width<>None:
+        if stroke_width!=None:
             self.attributes['stroke-width']=stroke_width
-        if stroke<>None:
+        if stroke!=None:
             self.attributes['stroke']=stroke
 
 class polyline(SVGelement):
@@ -497,12 +536,12 @@ class polyline(SVGelement):
     a polyline is defined by a list of xy pairs
     """
     def __init__(self,points,fill=None,stroke=None,stroke_width=None,**args):
-        SVGelement.__init__(self,'polyline',{'points':_xypointlist(points)},**args)
-        if fill<>None:
+        SVGelement.__init__(self, 'polyline', {'points':_xypointlist(points)}, **args)
+        if fill!=None:
             self.attributes['fill']=fill
-        if stroke_width<>None:
+        if stroke_width!=None:
             self.attributes['stroke-width']=stroke_width
-        if stroke<>None:
+        if stroke!=None:
             self.attributes['stroke']=stroke
 
 class polygon(SVGelement):
@@ -511,12 +550,12 @@ class polygon(SVGelement):
     a polygon is defined by a list of xy pairs
     """
     def __init__(self,points,fill=None,stroke=None,stroke_width=None,**args):
-        SVGelement.__init__(self,'polygon',{'points':_xypointlist(points)},**args)
-        if fill<>None:
+        SVGelement.__init__(self, 'polygon', {'points':_xypointlist(points)}, **args)
+        if fill!=None:
             self.attributes['fill']=fill
-        if stroke_width<>None:
+        if stroke_width!=None:
             self.attributes['stroke-width']=stroke_width
-        if stroke<>None:
+        if stroke!=None:
             self.attributes['stroke']=stroke
 
 class path(SVGelement):
@@ -525,14 +564,14 @@ class path(SVGelement):
     a path is defined by a path object and optional width, stroke and fillcolor
     """
     def __init__(self,pathdata,fill=None,stroke=None,stroke_width=None,id=None,**args):
-        SVGelement.__init__(self,'path',{'d':str(pathdata)},**args)
-        if stroke<>None:
+        SVGelement.__init__(self, 'path', {'d':str(pathdata)}, **args)
+        if stroke!=None:
             self.attributes['stroke']=stroke
-        if fill<>None:
+        if fill!=None:
             self.attributes['fill']=fill
-        if stroke_width<>None:
+        if stroke_width!=None:
             self.attributes['stroke-width']=stroke_width
-        if id<>None:
+        if id!=None:
             self.attributes['id']=id
 
 
@@ -542,18 +581,18 @@ class text(SVGelement):
     a text element can bge used for displaying text on the screen
     """
     def __init__(self,x=None,y=None,text=None,font_size=None,font_family=None,text_anchor=None,**args):
-        SVGelement.__init__(self,'text',**args)
-        if x<>None:
+        SVGelement.__init__(self, 'text', **args)
+        if x!=None:
             self.attributes['x']=x
-        if y<>None:
+        if y!=None:
             self.attributes['y']=y
-        if font_size<>None:
+        if font_size!=None:
             self.attributes['font-size']=font_size
-        if font_family<>None:
+        if font_family!=None:
             self.attributes['font-family']=font_family
-        if text<>None:
+        if text!=None:
             self.text=text
-        if text_anchor<>None:
+        if text_anchor!=None:
             self.attributes['text-anchor']=text_anchor
 
 
@@ -563,8 +602,8 @@ class textpath(SVGelement):
     a textpath places a text on a path which is referenced by a link.
     """
     def __init__(self,link,text=None,**args):
-        SVGelement.__init__(self,'textPath',{'xlink:href':link},**args)
-        if text<>None:
+        SVGelement.__init__(self, 'textPath', {'xlink:href':link}, **args)
+        if text!=None:
             self.text=text
 
 class pattern(SVGelement):
@@ -575,16 +614,16 @@ class pattern(SVGelement):
     in x and y to cover the areas to be painted.
     """
     def __init__(self,x=None,y=None,width=None,height=None,patternUnits=None,**args):
-        SVGelement.__init__(self,'pattern',**args)
-        if x<>None:
+        SVGelement.__init__(self, 'pattern', **args)
+        if x!=None:
             self.attributes['x']=x
-        if y<>None:
+        if y!=None:
             self.attributes['y']=y
-        if width<>None:
+        if width!=None:
             self.attributes['width']=width
-        if height<>None:
+        if height!=None:
             self.attributes['height']=height
-        if patternUnits<>None:
+        if patternUnits!=None:
             self.attributes['patternUnits']=patternUnits
 
 class title(SVGelement):
@@ -594,8 +633,8 @@ class title(SVGelement):
     add at least one to the root svg element
     """
     def __init__(self,text=None,**args):
-        SVGelement.__init__(self,'title',**args)
-        if text<>None:
+        SVGelement.__init__(self, 'title', **args)
+        if text!=None:
             self.text=text
 
 class description(SVGelement):
@@ -605,8 +644,8 @@ class description(SVGelement):
     Add this element before adding other elements.
     """
     def __init__(self,text=None,**args):
-        SVGelement.__init__(self,'desc',**args)
-        if text<>None:
+        SVGelement.__init__(self, 'desc', **args)
+        if text!=None:
             self.text=text
 
 class lineargradient(SVGelement):
@@ -616,16 +655,16 @@ class lineargradient(SVGelement):
     stop elements van be added to define the gradient colors.
     """
     def __init__(self,x1=None,y1=None,x2=None,y2=None,id=None,**args):
-        SVGelement.__init__(self,'linearGradient',**args)
-        if x1<>None:
+        SVGelement.__init__(self, 'linearGradient', **args)
+        if x1!=None:
             self.attributes['x1']=x1
-        if y1<>None:
+        if y1!=None:
             self.attributes['y1']=y1
-        if x2<>None:
+        if x2!=None:
             self.attributes['x2']=x2
-        if y2<>None:
+        if y2!=None:
             self.attributes['y2']=y2
-        if id<>None:
+        if id!=None:
             self.attributes['id']=id
 
 class radialgradient(SVGelement):
@@ -635,18 +674,18 @@ class radialgradient(SVGelement):
     stop elements van be added to define the gradient colors.
     """
     def __init__(self,cx=None,cy=None,r=None,fx=None,fy=None,id=None,**args):
-        SVGelement.__init__(self,'radialGradient',**args)
-        if cx<>None:
+        SVGelement.__init__(self, 'radialGradient', **args)
+        if cx!=None:
             self.attributes['cx']=cx
-        if cy<>None:
+        if cy!=None:
             self.attributes['cy']=cy
-        if r<>None:
+        if r!=None:
             self.attributes['r']=r
-        if fx<>None:
+        if fx!=None:
             self.attributes['fx']=fx
-        if fy<>None:
+        if fy!=None:
             self.attributes['fy']=fy
-        if id<>None:
+        if id!=None:
             self.attributes['id']=id
 
 class stop(SVGelement):
@@ -655,8 +694,8 @@ class stop(SVGelement):
     Puts a stop color at the specified radius
     """
     def __init__(self,offset,stop_color=None,**args):
-        SVGelement.__init__(self,'stop',{'offset':offset},**args)
-        if stop_color<>None:
+        SVGelement.__init__(self, 'stop', {'offset':offset}, **args)
+        if stop_color!=None:
             self.attributes['stop-color']=stop_color
 
 class style(SVGelement):
@@ -665,7 +704,7 @@ class style(SVGelement):
     Add a CDATA element to this element for defing in line stylesheets etc..
     """
     def __init__(self,type,cdata=None,**args):
-        SVGelement.__init__(self,'style',{'type':type},cdata=cdata, **args)
+        SVGelement.__init__(self, 'style', {'type':type}, cdata=cdata, **args)
 
 
 class image(SVGelement):
@@ -675,16 +714,11 @@ class image(SVGelement):
     """
     def __init__(self,url,x=None,y=None,width=None,height=None,**args):
         if width==None or height==None:
-            if width<>None:
-                raise ValueError, 'height is required'
-            if height<>None:
-                raise ValueError, 'width is required'
-            else:
-                raise ValueError, 'both height and width are required'
-        SVGelement.__init__(self,'image',{'xlink:href':url,'width':width,'height':height},**args)
-        if x<>None:
+            raise ValueError('both height and width are required')
+        SVGelement.__init__(self, 'image', {'xlink:href':url,'width':width,'height':height}, **args)
+        if x!=None:
             self.attributes['x']=x
-        if y<>None:
+        if y!=None:
             self.attributes['y']=y
 
 class cursor(SVGelement):
@@ -693,7 +727,7 @@ class cursor(SVGelement):
     defines a custom cursor for a element or a drawing
     """
     def __init__(self,url,**args):
-        SVGelement.__init__(self,'cursor',{'xlink:href':url},**args)
+        SVGelement.__init__(self, 'cursor', {'xlink:href':url}, **args)
 
 
 class marker(SVGelement):
@@ -703,18 +737,18 @@ class marker(SVGelement):
     add an element to it which should be used as a marker.
     """
     def __init__(self,id=None,viewBox=None,refx=None,refy=None,markerWidth=None,markerHeight=None,**args):
-        SVGelement.__init__(self,'marker',**args)
-        if id<>None:
+        SVGelement.__init__(self, 'marker', **args)
+        if id!=None:
             self.attributes['id']=id
-        if viewBox<>None:
+        if viewBox!=None:
             self.attributes['viewBox']=_viewboxlist(viewBox)
-        if refx<>None:
+        if refx!=None:
             self.attributes['refX']=refx
-        if refy<>None:
+        if refy!=None:
             self.attributes['refY']=refy
-        if markerWidth<>None:
+        if markerWidth!=None:
             self.attributes['markerWidth']=markerWidth
-        if markerHeight<>None:
+        if markerHeight!=None:
             self.attributes['markerHeight']=markerHeight
 
 class group(SVGelement):
@@ -724,8 +758,8 @@ class group(SVGelement):
     g.addElement(SVGelement)
     """
     def __init__(self,id=None,**args):
-        SVGelement.__init__(self,'g',**args)
-        if id<>None:
+        SVGelement.__init__(self, 'g', **args)
+        if id!=None:
             self.attributes['id']=id
 
 class symbol(SVGelement):
@@ -738,10 +772,10 @@ class symbol(SVGelement):
     """
 
     def __init__(self,id=None,viewBox=None,**args):
-        SVGelement.__init__(self,'symbol',**args)
-        if id<>None:
+        SVGelement.__init__(self, 'symbol', **args)
+        if id!=None:
             self.attributes['id']=id
-        if viewBox<>None:
+        if viewBox!=None:
             self.attributes['viewBox']=_viewboxlist(viewBox)
 
 class defs(SVGelement):
@@ -750,7 +784,7 @@ class defs(SVGelement):
     container for defining elements
     """
     def __init__(self,**args):
-        SVGelement.__init__(self,'defs',**args)
+        SVGelement.__init__(self, 'defs', **args)
 
 class switch(SVGelement):
     """sw=switch(**args)
@@ -760,7 +794,7 @@ class switch(SVGelement):
     Refer to the SVG specification for details.
     """
     def __init__(self,**args):
-        SVGelement.__init__(self,'switch',**args)
+        SVGelement.__init__(self, 'switch', **args)
 
 
 class use(SVGelement):
@@ -769,15 +803,15 @@ class use(SVGelement):
     references a symbol by linking to its id and its position, height and width
     """
     def __init__(self,link,x=None,y=None,width=None,height=None,**args):
-        SVGelement.__init__(self,'use',{'xlink:href':link},**args)
-        if x<>None:
+        SVGelement.__init__(self, 'use', {'xlink:href':link}, **args)
+        if x!=None:
             self.attributes['x']=x
-        if y<>None:
+        if y!=None:
             self.attributes['y']=y
 
-        if width<>None:
+        if width!=None:
             self.attributes['width']=width
-        if height<>None:
+        if height!=None:
             self.attributes['height']=height
 
 
@@ -788,15 +822,15 @@ class link(SVGelement):
     a.addElement(SVGelement)
     """
     def __init__(self,link='',**args):
-        SVGelement.__init__(self,'a',{'xlink:href':link},**args)
+        SVGelement.__init__(self, 'a', {'xlink:href':link}, **args)
 
 class view(SVGelement):
     """v=view(id,**args)
 
     a view can be used to create a view with different attributes"""
     def __init__(self,id=None,**args):
-        SVGelement.__init__(self,'view',**args)
-        if id<>None:
+        SVGelement.__init__(self, 'view', **args)
+        if id!=None:
             self.attributes['id']=id
 
 class script(SVGelement):
@@ -806,7 +840,7 @@ class script(SVGelement):
 
     """
     def __init__(self,type,cdata=None,**args):
-        SVGelement.__init__(self,'script',{'type':type},cdata=cdata,**args)
+        SVGelement.__init__(self, 'script', {'type':type}, cdata=cdata, **args)
 
 class animate(SVGelement):
     """an=animate(attribute,from,to,during,**args)
@@ -814,12 +848,12 @@ class animate(SVGelement):
     animates an attribute.
     """
     def __init__(self,attribute,fr=None,to=None,dur=None,**args):
-        SVGelement.__init__(self,'animate',{'attributeName':attribute},**args)
-        if fr<>None:
+        SVGelement.__init__(self, 'animate', {'attributeName':attribute}, **args)
+        if fr!=None:
             self.attributes['from']=fr
-        if to<>None:
+        if to!=None:
             self.attributes['to']=to
-        if dur<>None:
+        if dur!=None:
             self.attributes['dur']=dur
 
 class animateMotion(SVGelement):
@@ -828,10 +862,10 @@ class animateMotion(SVGelement):
     animates a SVGelement over the given path in dur seconds
     """
     def __init__(self,pathdata,dur,**args):
-        SVGelement.__init__(self,'animateMotion',**args)
-        if pathdata<>None:
+        SVGelement.__init__(self, 'animateMotion', **args)
+        if pathdata!=None:
             self.attributes['path']=str(pathdata)
-        if dur<>None:
+        if dur!=None:
             self.attributes['dur']=dur
 
 class animateTransform(SVGelement):
@@ -840,15 +874,15 @@ class animateTransform(SVGelement):
     transform an element from and to a value.
     """
     def __init__(self,type=None,fr=None,to=None,dur=None,**args):
-        SVGelement.__init__(self,'animateTransform',{'attributeName':'transform'},**args)
-        #As far as I know the attributeName is always transform
-        if type<>None:
+        SVGelement.__init__(self, 'animateTransform', {'attributeName':'transform'}, **args)
+        # As far as I know the attributeName is always transform
+        if type!=None:
             self.attributes['type']=type
-        if fr<>None:
+        if fr!=None:
             self.attributes['from']=fr
-        if to<>None:
+        if to!=None:
             self.attributes['to']=to
-        if dur<>None:
+        if dur!=None:
             self.attributes['dur']=dur
 class animateColor(SVGelement):
     """ac=animateColor(attribute,type,from,to,dur,**args)
@@ -856,14 +890,14 @@ class animateColor(SVGelement):
     Animates the color of a element
     """
     def __init__(self,attribute,type=None,fr=None,to=None,dur=None,**args):
-        SVGelement.__init__(self,'animateColor',{'attributeName':attribute},**args)
-        if type<>None:
+        SVGelement.__init__(self, 'animateColor', {'attributeName':attribute}, **args)
+        if type!=None:
             self.attributes['type']=type
-        if fr<>None:
+        if fr!=None:
             self.attributes['from']=fr
-        if to<>None:
+        if to!=None:
             self.attributes['to']=to
-        if dur<>None:
+        if dur!=None:
             self.attributes['dur']=dur
 class set(SVGelement):
     """st=set(attribute,to,during,**args)
@@ -871,10 +905,10 @@ class set(SVGelement):
     sets an attribute to a value for a
     """
     def __init__(self,attribute,to=None,dur=None,**args):
-        SVGelement.__init__(self,'set',{'attributeName':attribute},**args)
-        if to<>None:
+        SVGelement.__init__(self, 'set', {'attributeName':attribute}, **args)
+        if to!=None:
             self.attributes['to']=to
-        if dur<>None:
+        if dur!=None:
             self.attributes['dur']=dur
 
 
@@ -895,12 +929,12 @@ class svg(SVGelement):
     d.toXml()
     """
     def __init__(self,viewBox=None, width=None, height=None,**args):
-        SVGelement.__init__(self,'svg',**args)
-        if viewBox<>None:
+        SVGelement.__init__(self, 'svg', **args)
+        if viewBox!=None:
             self.attributes['viewBox']=_viewboxlist(viewBox)
-        if width<>None:
+        if width!=None:
             self.attributes['width']=width
-        if height<>None:
+        if height!=None:
             self.attributes['height']=height
         self.namespace="http://www.w3.org/2000/svg"
 
@@ -918,27 +952,27 @@ class drawing:
     def __init__(self, entity={}):
         self.svg=None
         self.entity = entity
-    def setSVG(self,svg):
+    def setSVG(self, svg):
         self.svg=svg
-        #Voeg een element toe aan de grafiek toe.
+        # Voeg een element toe aan de grafiek toe.
     if use_dom_implementation==0:
         def toXml(self, filename='',compress=False):
-            import cStringIO
-            xml=cStringIO.StringIO()
+            import io
+            xml=io.StringIO()
             xml.write("<?xml version='1.0' encoding='UTF-8'?>\n")
             xml.write("<!DOCTYPE svg PUBLIC \"-//W3C//DTD SVG 1.0//EN\" \"http://www.w3.org/TR/2001/REC-SVG-20010904/DTD/svg10.dtd\"")
             if self.entity:
                 xml.write(" [\n")
-                for item in self.entity.keys():
+                for item in list(self.entity.keys()):
                     xml.write("<!ENTITY %s \"%s\">\n" % (item, self.entity[item]))
                 xml.write("]")
             xml.write(">\n")
-            self.svg.toXml(0,xml)
+            self.svg.toXml(0, xml)
             if not filename:
                 if compress:
                     import gzip
-                    f=cStringIO.StringIO()
-                    zf=gzip.GzipFile(fileobj=f,mode='wb')
+                    f=io.StringIO()
+                    zf=gzip.GzipFile(fileobj=f, mode='wb')
                     zf.write(xml.getvalue())
                     zf.close()
                     f.seek(0)
@@ -948,11 +982,11 @@ class drawing:
             else:
                 if filename[-4:]=='svgz':
                     import gzip
-                    f=gzip.GzipFile(filename=filename,mode="wb", compresslevel=9)
+                    f=gzip.GzipFile(filename=filename, mode="wb", compresslevel=9)
                     f.write(xml.getvalue())
                     f.close()
                 else:
-                    f=file(filename,'w')
+                    f=file(filename, 'w')
                     f.write(xml.getvalue())
                     f.close()
 
@@ -963,40 +997,40 @@ class drawing:
             writes a svg drawing to the screen or to a file
             compresses if filename ends with svgz or if compress is true
             """
-            doctype = implementation.createDocumentType('svg',"-//W3C//DTD SVG 1.0//EN""",'http://www.w3.org/TR/2001/REC-SVG-20010904/DTD/svg10.dtd ')
+            doctype = implementation.createDocumentType('svg', "-//W3C//DTD SVG 1.0//EN""", 'http://www.w3.org/TR/2001/REC-SVG-20010904/DTD/svg10.dtd ')
 
             global root
-            #root is defined global so it can be used by the appender. Its also possible to use it as an arugument but
-            #that is a bit messy.
-            root=implementation.createDocument(None,None,doctype)
-            #Create the xml document.
+            # root is defined global so it can be used by the appender. Its also possible to use it as an arugument but
+            # that is a bit messy.
+            root=implementation.createDocument(None, None, doctype)
+            # Create the xml document.
             global appender
-            def appender(element,elementroot):
+            def appender(element, elementroot):
                 """This recursive function appends elements to an element and sets the attributes
                 and type. It stops when alle elements have been appended"""
                 if element.namespace:
-                    e=root.createElementNS(element.namespace,element.type)
+                    e=root.createElementNS(element.namespace, element.type)
                 else:
                     e=root.createElement(element.type)
                 if element.text:
                     textnode=root.createTextNode(element.text)
                     e.appendChild(textnode)
-                for attribute in element.attributes.keys():   #in element.attributes is supported from python 2.2
-                    e.setAttribute(attribute,str(element.attributes[attribute]))
+                for attribute in list(element.attributes.keys()):   #in element.attributes is supported from python 2.2
+                    e.setAttribute(attribute, str(element.attributes[attribute]))
                 if element.elements:
                     for el in element.elements:
-                        e=appender(el,e)
+                        e=appender(el, e)
                 elementroot.appendChild(e)
                 return elementroot
-            root=appender(self.svg,root)
+            root=appender(self.svg, root)
             if not filename:
-                import cStringIO
-                xml=cStringIO.StringIO()
-                PrettyPrint(root,xml)
+                import io
+                xml=io.StringIO()
+                PrettyPrint(root, xml)
                 if compress:
                     import gzip
-                    f=cStringIO.StringIO()
-                    zf=gzip.GzipFile(fileobj=f,mode='wb')
+                    f=io.StringIO()
+                    zf=gzip.GzipFile(fileobj=f, mode='wb')
                     zf.write(xml.getvalue())
                     zf.close()
                     f.seek(0)
@@ -1007,23 +1041,23 @@ class drawing:
                 try:
                     if filename[-4:]=='svgz':
                         import gzip
-                        import cStringIO
-                        xml=cStringIO.StringIO()
-                        PrettyPrint(root,xml)
-                        f=gzip.GzipFile(filename=filename,mode='wb',compresslevel=9)
+                        import io
+                        xml=io.StringIO()
+                        PrettyPrint(root, xml)
+                        f=gzip.GzipFile(filename=filename, mode='wb', compresslevel=9)
                         f.write(xml.getvalue())
                         f.close()
                     else:
-                        f=open(filename,'w')
-                        PrettyPrint(root,f)
+                        f=open(filename, 'w')
+                        PrettyPrint(root, f)
                         f.close()
                 except:
-                    print "Cannot write SVG file: " + filename
+                    print(("Cannot write SVG file: " + filename))
     def validate(self):
         try:
             import xml.parsers.xmlproc.xmlval
         except:
-            raise exceptions.ImportError,'PyXml is required for validating SVG'
+            raise exceptions.ImportError('PyXml is required for validating SVG')
         svg=self.toXml()
         xv=xml.parsers.xmlproc.xmlval.XMLValidator()
         try:
@@ -1031,38 +1065,38 @@ class drawing:
         except:
             raise Exception("SVG is not well formed, see messages above")
         else:
-            print "SVG well formed"
+            print("SVG well formed")
 if __name__=='__main__':
 
 
     d=drawing()
-    s=svg((0,0,100,100))
-    r=rect(-100,-100,300,300,'cyan')
+    s=svg((0, 0, 100, 100))
+    r=rect(-100, -100, 300, 300, 'cyan')
     s.addElement(r)
 
     t=title('SVGdraw Demo')
     s.addElement(t)
     g=group('animations')
-    e=ellipse(0,0,5,2)
+    e=ellipse(0, 0, 5, 2)
     g.addElement(e)
-    c=circle(0,0,1,'red')
+    c=circle(0, 0, 1, 'red')
     g.addElement(c)
-    pd=pathdata(0,-10)
+    pd=pathdata(0, -10)
     for i in range(6):
-        pd.relsmbezier(10,5,0,10)
-        pd.relsmbezier(-10,5,0,10)
-    an=animateMotion(pd,10)
+        pd.relsmbezier(10, 5, 0, 10)
+        pd.relsmbezier(-10, 5, 0, 10)
+    an=animateMotion(pd, 10)
     an.attributes['rotate']='auto-reverse'
     an.attributes['repeatCount']="indefinite"
     g.addElement(an)
     s.addElement(g)
-    for i in range(20,120,20):
-        u=use('#animations',i,0)
+    for i in range(20, 120, 20):
+        u=use('#animations', i, 0)
         s.addElement(u)
-    for i in range(0,120,20):
-        for j in range(5,105,10):
-            c=circle(i,j,1,'red','black',.5)
+    for i in range(0, 120, 20):
+        for j in range(5, 105, 10):
+            c=circle(i, j, 1, 'red', 'black', .5)
             s.addElement(c)
     d.setSVG(s)
 
-    print d.toXml()
+    print((d.toXml()))