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| author | Lei Yan | 2013-06-13 21:13:51 +0000 |
|---|---|---|
| committer | Lei Yan | 2013-06-13 21:13:51 +0000 |
| commit | 25bd2fa7ac229eb7862fe778fe03eb75ff34368c (patch) | |
| tree | 0cdfb472ce5c0c7fb5c499fe7b34806295dead46 /wqflask/utility/helper_functions.py | |
| parent | 3b047d589fa89ddd9aff852d4f2a00c580eb7243 (diff) | |
| download | genenetwork2-25bd2fa7ac229eb7862fe778fe03eb75ff34368c.tar.gz | |
Fixed issue where too much memory was used as a result of creating a
dataset object for each trait in the correlation results
Added new fields/columns for each trait in the correlation result table
(max LRS, max LRS location, mean expression)
Fixed error if trait doesn't have these fields
Diffstat (limited to 'wqflask/utility/helper_functions.py')
| -rw-r--r-- | wqflask/utility/helper_functions.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py index 28242c27..d76a32ce 100644 --- a/wqflask/utility/helper_functions.py +++ b/wqflask/utility/helper_functions.py @@ -9,7 +9,7 @@ def get_species_dataset_trait(self, start_vars): #assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype" self.dataset = data_set.create_dataset(start_vars['dataset']) self.species = TheSpecies(dataset=self.dataset) - self.this_trait = GeneralTrait(dataset=self.dataset.name, + self.this_trait = GeneralTrait(dataset=self.dataset, name=start_vars['trait_id'], cellid=None) |