Merge branch 'flask'

1 files changed, 18 insertions, 0 deletions

diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py
new file mode 100644
index 00000000..d76a32ce
--- /dev/null
+++ b/wqflask/utility/helper_functions.py
@@ -0,0 +1,18 @@
+from __future__ import absolute_import, print_function, division
+
+from base.trait import GeneralTrait
+from base import data_set
+from base.species import TheSpecies
+
+
+def get_species_dataset_trait(self, start_vars):
+    #assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype"
+    self.dataset = data_set.create_dataset(start_vars['dataset'])
+    self.species = TheSpecies(dataset=self.dataset)
+    self.this_trait = GeneralTrait(dataset=self.dataset,
+                                   name=start_vars['trait_id'],
+                                   cellid=None)
+
+    #if read_genotype:
+    self.dataset.group.read_genotype_file()
+    #self.genotype = self.dataset.group.genotype