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| author | Pjotr Prins | 2016-10-06 14:27:17 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2016-10-06 14:27:17 +0000 |
| commit | 94f7e2494f5e48b12ae10c0bf46ebc2367b0eecc (patch) | |
| tree | a3e3989d0817e63cd6df0ef7d93b50e659c8288f /wqflask/utility/helper_functions.py | |
| parent | bd35fd6430e5b8b88fd3a7b8afa933d2b0f20b4e (diff) | |
| parent | 416363b3f8940d145d8aec076865b167e78705d9 (diff) | |
| download | genenetwork2-94f7e2494f5e48b12ae10c0bf46ebc2367b0eecc.tar.gz | |
Merge branch 'master' of github.com:genenetwork/genenetwork2 into mechanize
Diffstat (limited to 'wqflask/utility/helper_functions.py')
| -rw-r--r-- | wqflask/utility/helper_functions.py | 12 |
1 files changed, 7 insertions, 5 deletions
diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py index 149ee553..377f6b26 100644 --- a/wqflask/utility/helper_functions.py +++ b/wqflask/utility/helper_functions.py @@ -5,19 +5,21 @@ from base import data_set from base.species import TheSpecies from wqflask import user_manager +import logging +logger = logging.getLogger(__name__ ) def get_species_dataset_trait(self, start_vars): #assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype" self.dataset = data_set.create_dataset(start_vars['dataset']) - print("After creating dataset") + logger.debug("After creating dataset") self.species = TheSpecies(dataset=self.dataset) - print("After creating species") + logger.debug("After creating species") self.this_trait = GeneralTrait(dataset=self.dataset, name=start_vars['trait_id'], cellid=None, get_qtl_info=True) - print("After creating trait") + logger.debug("After creating trait") #if read_genotype: #self.dataset.group.read_genotype_file() @@ -27,7 +29,7 @@ def get_species_dataset_trait(self, start_vars): def get_trait_db_obs(self, trait_db_list): if isinstance(trait_db_list, basestring): trait_db_list = trait_db_list.split(",") - + self.trait_list = [] for trait in trait_db_list: data, _separator, hmac = trait.rpartition(':') @@ -38,4 +40,4 @@ def get_trait_db_obs(self, trait_db_list): trait_ob = GeneralTrait(dataset=dataset_ob, name=trait_name, cellid=None) - self.trait_list.append((trait_ob, dataset_ob))
\ No newline at end of file + self.trait_list.append((trait_ob, dataset_ob)) |