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authorLei Yan2013-06-13 21:13:51 +0000
committerLei Yan2013-06-13 21:13:51 +0000
commit25bd2fa7ac229eb7862fe778fe03eb75ff34368c (patch)
tree0cdfb472ce5c0c7fb5c499fe7b34806295dead46 /wqflask/utility/helper_functions.py
parent3b047d589fa89ddd9aff852d4f2a00c580eb7243 (diff)
downloadgenenetwork2-25bd2fa7ac229eb7862fe778fe03eb75ff34368c.tar.gz
Fixed issue where too much memory was used as a result of creating a
dataset object for each trait in the correlation results Added new fields/columns for each trait in the correlation result table (max LRS, max LRS location, mean expression) Fixed error if trait doesn't have these fields
Diffstat (limited to 'wqflask/utility/helper_functions.py')
-rw-r--r--wqflask/utility/helper_functions.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py
index 28242c27..d76a32ce 100644
--- a/wqflask/utility/helper_functions.py
+++ b/wqflask/utility/helper_functions.py
@@ -9,7 +9,7 @@ def get_species_dataset_trait(self, start_vars):
#assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype"
self.dataset = data_set.create_dataset(start_vars['dataset'])
self.species = TheSpecies(dataset=self.dataset)
- self.this_trait = GeneralTrait(dataset=self.dataset.name,
+ self.this_trait = GeneralTrait(dataset=self.dataset,
name=start_vars['trait_id'],
cellid=None)