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author | BonfaceKilz | 2021-04-30 13:06:58 +0300 |
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committer | BonfaceKilz | 2021-04-30 13:45:15 +0300 |
commit | 4e65b73a0f903834f8dbd02d11c49b75d7c935c7 (patch) | |
tree | 18add06933583233d183e5554fda91a4a46e8191 /wqflask/utility/genofile_parser.py | |
parent | 114e7d3395f28ddead0ff3a94c10d0bf534fb493 (diff) | |
download | genenetwork2-4e65b73a0f903834f8dbd02d11c49b75d7c935c7.tar.gz |
autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133
Diffstat (limited to 'wqflask/utility/genofile_parser.py')
-rw-r--r-- | wqflask/utility/genofile_parser.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/wqflask/utility/genofile_parser.py b/wqflask/utility/genofile_parser.py index eb545478..86d9823e 100644 --- a/wqflask/utility/genofile_parser.py +++ b/wqflask/utility/genofile_parser.py @@ -37,10 +37,10 @@ class ConvertGenoFile: self.input_fh = open(input_file) print("!!!!!!!!!!!!!!!!PARSER!!!!!!!!!!!!!!!!!!") self.haplotype_notation = { - '@mat': "1", - '@pat': "2", - '@het': "-999", - '@unk': "-999" + '@mat': "1", + '@pat': "2", + '@het': "-999", + '@unk': "-999" } self.configurations = {} @@ -93,7 +93,7 @@ class ConvertGenoFile: for item_count, genotype in enumerate(genotypes): if genotype.upper().strip() in self.configurations: this_marker.genotypes.append( - self.configurations[genotype.upper().strip()]) + self.configurations[genotype.upper().strip()]) else: print("WARNING:", genotype.upper()) this_marker.genotypes.append("NA") |