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authorzsloan2018-04-09 17:18:15 +0000
committerzsloan2018-04-09 17:18:15 +0000
commitad71cfe2828a2cc7378b83c0b0f476b53e7dd03b (patch)
tree75907e0f8eca80efde8f20681d1205343145aa72 /wqflask/utility/corestats.py
parentc9b0ab18457929bd7ca458f7207e50fe14099d6a (diff)
downloadgenenetwork2-ad71cfe2828a2cc7378b83c0b0f476b53e7dd03b.tar.gz
Removed unused code from convert_geno_to_bimbam.py and corestats.py
Diffstat (limited to 'wqflask/utility/corestats.py')
-rw-r--r--wqflask/utility/corestats.py16
1 files changed, 0 insertions, 16 deletions
diff --git a/wqflask/utility/corestats.py b/wqflask/utility/corestats.py
index c48183ed..67ca3ad3 100644
--- a/wqflask/utility/corestats.py
+++ b/wqflask/utility/corestats.py
@@ -23,47 +23,33 @@ class Stats:
# convert all items to floats for numerical processing
self.sequence = [float(item) for item in sequence]
-
def sum(self):
if len(self.sequence) < 1:
return None
else:
return sum(self.sequence)
-
def count(self):
return len(self.sequence)
-
def min(self):
if len(self.sequence) < 1:
return None
else:
return min(self.sequence)
-
def max(self):
if len(self.sequence) < 1:
return None
else:
return max(self.sequence)
-
def avg(self):
if len(self.sequence) < 1:
return None
else:
return sum(self.sequence) / len(self.sequence)
-
- def median(self):
- if len(self.sequence) < 1:
- return None
- else:
- self.sequence.sort()
- return self.sequence[len(self.sequence) // 2]
-
-
def stdev(self):
if len(self.sequence) < 1:
return None
@@ -73,7 +59,6 @@ class Stats:
stdev = (sdsq / (len(self.sequence) - 1)) ** .5
return stdev
-
def percentile(self, percentile):
if len(self.sequence) < 1:
value = None
@@ -86,7 +71,6 @@ class Stats:
value = self.sequence[element_idx]
return value
-
# Sample script using this class:
# -------------------------------------------
# #!/usr/bin/env python