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authorBonfaceKilz2020-10-27 01:18:38 +0300
committerGitHub2020-10-27 01:18:38 +0300
commit37c391bc62e9080effcf83c6ff0056ab8841b7fb (patch)
tree1e794c5616c25e82869314a2f4e91f64c4d40ea9 /wqflask/utility/Plot.py
parent85896707ef1f9e214b45298f6b5b1a9dc37bc839 (diff)
parentb369489e6c075eee3f58bb33e493c901b052b0a1 (diff)
downloadgenenetwork2-37c391bc62e9080effcf83c6ff0056ab8841b7fb.tar.gz
Merge pull request #422 from BonfaceKilz/build/python3-migration
Build/python3 migration
Diffstat (limited to 'wqflask/utility/Plot.py')
-rw-r--r--wqflask/utility/Plot.py56
1 files changed, 27 insertions, 29 deletions
diff --git a/wqflask/utility/Plot.py b/wqflask/utility/Plot.py
index b9b71129..61f408d2 100644
--- a/wqflask/utility/Plot.py
+++ b/wqflask/utility/Plot.py
@@ -24,15 +24,13 @@
#
# Last updated by GeneNetwork Core Team 2010/10/20
-from __future__ import print_function
-
from PIL import ImageColor
from PIL import ImageDraw
from PIL import ImageFont
from math import *
-import corestats
+import utility.corestats as corestats
from base import webqtlConfig
from utility.pillow_utils import draw_rotated_text
import utility.logger
@@ -54,7 +52,7 @@ def cformat(d, rank=0):
strD = "%2.6f" % d
if rank == 0:
- while strD[-1] in ('0','.'):
+ while strD[-1] in ('0', '.'):
if strD[-1] == '0' and strD[-2] == '.' and len(strD) <= 4:
break
elif strD[-1] == '.':
@@ -82,7 +80,7 @@ def frange(start, end=None, inc=1.0):
# Need to adjust the count. AFAICT, it always comes up one short.
count += 1
L = [start] * count
- for i in xrange(1, count):
+ for i in range(1, count):
L[i] = start + i * inc
return L
@@ -93,7 +91,7 @@ def find_outliers(vals):
>>> find_outliers([3.504, 5.234, 6.123, 7.234, 3.542, 5.341, 7.852, 4.555, 12.537])
(11.252500000000001, 0.5364999999999993)
- >>> >>> find_outliers([9,12,15,17,31,50,7,5,6,8])
+ >>> find_outliers([9,12,15,17,31,50,7,5,6,8])
(32.0, -8.0)
If there are no vals, returns None for the upper and lower bounds,
@@ -158,7 +156,7 @@ def plotBar(canvas, data, barColor=BLUE, axesColor=BLACK, labelColor=BLACK, XLab
j = int((item-xLow)/step)
Count[j] += 1
- yLow, yTop, stepY=detScale(0,max(Count))
+ yLow, yTop, stepY=detScale(0, max(Count))
#draw data
xScale = plotWidth/(xTop-xLow)
@@ -170,7 +168,7 @@ def plotBar(canvas, data, barColor=BLUE, axesColor=BLACK, labelColor=BLACK, XLab
xc = (dataXY[i]-xLow)*xScale+xLeftOffset
yc =-(count-yLow)*yScale+yTopOffset+plotHeight
im_drawer.rectangle(
- xy=((xc+2,yc),(xc+barWidth-2,yTopOffset+plotHeight)),
+ xy=((xc+2, yc), (xc+barWidth-2, yTopOffset+plotHeight)),
outline=barColor, fill=barColor)
#draw drawing region
@@ -179,81 +177,81 @@ def plotBar(canvas, data, barColor=BLUE, axesColor=BLACK, labelColor=BLACK, XLab
)
#draw scale
- scaleFont=ImageFont.truetype(font=COUR_FILE,size=11)
+ scaleFont=ImageFont.truetype(font=COUR_FILE, size=11)
x=xLow
for i in range(int(stepX)+1):
xc=xLeftOffset+(x-xLow)*xScale
im_drawer.line(
- xy=((xc,yTopOffset+plotHeight),(xc,yTopOffset+plotHeight+5)),
+ xy=((xc, yTopOffset+plotHeight), (xc, yTopOffset+plotHeight+5)),
fill=axesColor)
strX = cformat(d=x, rank=0)
im_drawer.text(
text=strX,
- xy=(xc-im_drawer.textsize(strX,font=scaleFont)[0]/2,
- yTopOffset+plotHeight+14),font=scaleFont)
+ xy=(xc-im_drawer.textsize(strX, font=scaleFont)[0]/2,
+ yTopOffset+plotHeight+14), font=scaleFont)
x+= (xTop - xLow)/stepX
y=yLow
for i in range(int(stepY)+1):
yc=yTopOffset+plotHeight-(y-yLow)*yScale
- im_drawer.line(xy=((xLeftOffset,yc),(xLeftOffset-5,yc)), fill=axesColor)
+ im_drawer.line(xy=((xLeftOffset, yc), (xLeftOffset-5, yc)), fill=axesColor)
strY = "%d" %y
im_drawer.text(
text=strY,
- xy=(xLeftOffset-im_drawer.textsize(strY,font=scaleFont)[0]-6,yc+5),
+ xy=(xLeftOffset-im_drawer.textsize(strY, font=scaleFont)[0]-6, yc+5),
font=scaleFont)
y+= (yTop - yLow)/stepY
#draw label
- labelFont=ImageFont.truetype(font=TAHOMA_FILE,size=17)
+ labelFont=ImageFont.truetype(font=TAHOMA_FILE, size=17)
if XLabel:
im_drawer.text(
text=XLabel,
xy=(xLeftOffset+(
- plotWidth-im_drawer.textsize(XLabel,font=labelFont)[0])/2.0,
+ plotWidth-im_drawer.textsize(XLabel, font=labelFont)[0])/2.0,
yTopOffset+plotHeight+yBottomOffset-10),
- font=labelFont,fill=labelColor)
+ font=labelFont, fill=labelColor)
if YLabel:
draw_rotated_text(canvas, text=YLabel,
xy=(19,
yTopOffset+plotHeight-(
plotHeight-im_drawer.textsize(
- YLabel,font=labelFont)[0])/2.0),
+ YLabel, font=labelFont)[0])/2.0),
font=labelFont, fill=labelColor, angle=90)
- labelFont=ImageFont.truetype(font=VERDANA_FILE,size=16)
+ labelFont=ImageFont.truetype(font=VERDANA_FILE, size=16)
if title:
im_drawer.text(
text=title,
xy=(xLeftOffset+(plotWidth-im_drawer.textsize(
- title,font=labelFont)[0])/2.0,
+ title, font=labelFont)[0])/2.0,
20),
- font=labelFont,fill=labelColor)
+ font=labelFont, fill=labelColor)
# This function determines the scale of the plot
-def detScaleOld(min,max):
+def detScaleOld(min, max):
if min>=max:
return None
elif min == -1.0 and max == 1.0:
- return [-1.2,1.2,12]
+ return [-1.2, 1.2, 12]
else:
a=max-min
b=floor(log10(a))
- c=pow(10.0,b)
+ c=pow(10.0, b)
if a < c*5.0:
c/=2.0
#print a,b,c
low=c*floor(min/c)
high=c*ceil(max/c)
- return [low,high,round((high-low)/c)]
+ return [low, high, round((high-low)/c)]
def detScale(min=0,max=0):
if min>=max:
return None
elif min == -1.0 and max == 1.0:
- return [-1.2,1.2,12]
+ return [-1.2, 1.2, 12]
else:
a=max-min
if max != 0:
@@ -265,7 +263,7 @@ def detScale(min=0,max=0):
min -= 0.1*a
a=max-min
b=floor(log10(a))
- c=pow(10.0,b)
+ c=pow(10.0, b)
low=c*floor(min/c)
high=c*ceil(max/c)
n = round((high-low)/c)
@@ -283,7 +281,7 @@ def detScale(min=0,max=0):
high=c*ceil(max/c)
n = round((high-low)/c)
- return [low,high,n]
+ return [low, high, n]
def bluefunc(x):
return 1.0 / (1.0 + exp(-10*(x-0.6)))
@@ -292,7 +290,7 @@ def redfunc(x):
return 1.0 / (1.0 + exp(10*(x-0.5)))
def greenfunc(x):
- return 1 - pow(redfunc(x+0.2),2) - bluefunc(x-0.3)
+ return 1 - pow(redfunc(x+0.2), 2) - bluefunc(x-0.3)
def colorSpectrum(n=100):
multiple = 10