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authorMunyoki Kilyungi2022-12-01 19:18:15 +0300
committerzsloan2022-12-01 15:11:13 -0600
commit0d399493056c9c4618141fcb385dd3daf32b8d42 (patch)
tree17ceaf508e1a1afe67356344ec5f086b56b4682f /wqflask/tests
parent96a1652c8359a1215d8ad330ac05d19b1f6d98a3 (diff)
downloadgenenetwork2-0d399493056c9c4618141fcb385dd3daf32b8d42.tar.gz
Reproduce ValueError when query_sql returns None
* wqflask/tests/unit/base/test_data_set.py (TestDatasetAccessionId): New test cases.
Diffstat (limited to 'wqflask/tests')
-rw-r--r--wqflask/tests/unit/base/test_data_set.py56
1 files changed, 55 insertions, 1 deletions
diff --git a/wqflask/tests/unit/base/test_data_set.py b/wqflask/tests/unit/base/test_data_set.py
index 5e6068f9..744c8a94 100644
--- a/wqflask/tests/unit/base/test_data_set.py
+++ b/wqflask/tests/unit/base/test_data_set.py
@@ -2,10 +2,12 @@
import unittest
from unittest import mock
+from dataclasses import dataclass
+from gn3.monads import MonadicDict
from wqflask import app
from base.data_set import DatasetType
-
+from base.data_set.dataset import DataSet
GEN_MENU_JSON = """
{
@@ -118,6 +120,22 @@ GEN_MENU_JSON = """
}
"""
+class MockPhenotypeDataset(DataSet):
+ def setup(self):
+ self.type = "Publish"
+ self.query_for_group = ""
+ self.group = ""
+
+
+ def check_confidentiality(self):
+ pass
+
+ def retrieve_other_names(self):
+ pass
+
+@dataclass
+class MockGroup:
+ name = "Group"
class TestDataSetTypes(unittest.TestCase):
"""Tests for the DataSetType class"""
@@ -182,3 +200,39 @@ class TestDataSetTypes(unittest.TestCase):
'"HC_M2_0606_P": "ProbeSet", '
'"BXDPublish": "Publish"}'))
+
+class TestDatasetAccessionId(unittest.TestCase):
+ """Tests for the DataSetType class"""
+
+ @mock.patch("base.data_set.dataset.query_sql")
+ @mock.patch("base.data_set.dataset.DatasetGroup")
+ def test_get_accession_id(self, mock_dataset_group, mock_query_sql):
+ def mock_fn():
+ yield MonadicDict({"accession_id": 7})
+ mock_dataset_group.return_value = MockGroup()
+ mock_query_sql.return_value = mock_fn()
+ sample_dataset = MockPhenotypeDataset(
+ name="BXD-LongevityPublish",
+ get_samplelist=False,
+ group_name="BXD",
+ redis_conn=mock.Mock()
+ )
+ sample_dataset\
+ .accession_id\
+ .bind(lambda x: self.assertEqual(7, x))
+
+ @mock.patch("base.data_set.dataset.query_sql")
+ @mock.patch("base.data_set.dataset.DatasetGroup")
+ def test_get_accession_id_empty_return(self, mock_dataset_group,
+ mock_query_sql):
+ mock_dataset_group.return_value = MockGroup()
+ mock_query_sql.return_value = None
+ sample_dataset = MockPhenotypeDataset(
+ name="BXD-LongevityPublish",
+ get_samplelist=False,
+ group_name="BXD",
+ redis_conn=mock.Mock()
+ )
+ sample_dataset\
+ .accession_id\
+ .bind(lambda x: self.assertNone(x))